Sample records for zooplankton diversity analysis

  1. Size and species diversity of zooplankton communities in fluctuating Mediterranean salt marshes

    NASA Astrophysics Data System (ADS)

    Brucet, Sandra; Boix, Dani; López-Flores, Rocío; Badosa, Anna; Quintana, Xavier D.

    2006-04-01

    Differences in size and species diversity were analysed in a zooplankton community of a Mediterranean salt marsh (Empordà wetlands, NE Iberian Peninsula), where the dominance of a single species was frequent. In the permanent salt marsh, species diversity and size diversity had similar patterns along zooplankton succession. In the temporary salt marsh species diversity was high after flooding and diminished once water inputs ceased. As species diversity declined size diversity increased. Eventually, one species of calanoid dominated the zooplankton community. The high size diversity in situations of calanoid dominance was possibly due to the co-occurrence of different developmental stages, each of which have different diets. Size diversity would thus indicate trophic niche segregation among different sizes. The combined use of species and size diversity values allows the identification of the successional phases.

  2. Estimating Diversity of Florida Keys Zooplankton Using New Environmental DNA Methods

    NASA Astrophysics Data System (ADS)

    Djurhuus, A.; Goldsmith, D. B.; Sawaya, N. A.; Breitbart, M.

    2016-02-01

    Zooplankton are of great importance in marine food webs, where they serve to link the phytoplankton and bacteria with higher trophic levels. Zooplankton are a diverse group containing molluscs, crustaceans, fish larvae and many other taxa. The sheer number of species and often minor morphological distinctions between species makes it challenging and exceptionally time consuming to identify the species composition of marine zooplankton samples. As a part of the Marine Biodiversity Observation Network (MBON) project, we have developed and groundtruthed an alternative, relatively time-efficient method for zooplankton identification using environmental DNA (eDNA). Samples were collected from Molasses reef, Looe Key, and Western Sambo along the Florida Keys from five bi-monthly cruises on board the RV Walton Smith. Samples were collected for environmental DNA (eDNA) by filtering 1 L of water on to a 0.22 µm filter and zooplankton samples were collected using nets with three mesh sizes (64μm, 200μm, and 500μm) to catch different size fractions. Half of zooplankton samples were fixed in 70% ethanol and half in 10% formalin, for DNA extraction and morphological identification, respectively. Individuals representing visually abundant taxa were picked into individual wells for PCR with universal 18S rRNA gene primers and subsequent sequencing to build a reference barcode database for zooplankton species commonly found in the study region. PCR and Illumina MiSeq next generation sequencing was applied to the eDNA extracted from the 0.22 μm filters and sequences were be compared to our local custom database as well as publicly available databases to determine zooplankton community composition. Finally, composition and diversity analyses were performed to compare results obtained with the new eDNA approach to standard morphological classification of zooplankton communities. Results show that the eDNA approach can enable the determination of zooplankton diversity through

  3. Increasing zooplankton size diversity enhances the strength of top-down control on phytoplankton through diet niche partitioning.

    PubMed

    Ye, Lin; Chang, Chun-Yi; García-Comas, Carmen; Gong, Gwo-Ching; Hsieh, Chih-Hao

    2013-09-01

    1. The biodiversity-ecosystem functioning debate is a central topic in ecology. Recently, there has been a growing interest in size diversity because body size is sensitive to environmental changes and is one of the fundamental characteristics of organisms linking many ecosystem properties. However, how size diversity affects ecosystem functioning is an important yet unclear issue. 2. To fill the gap, with large-scale field data from the East China Sea, we tested the novel hypothesis that increasing zooplankton size diversity enhances top-down control on phytoplankton (H1) and compared it with five conventional hypotheses explaining the top-down control: flatter zooplankton size spectrum enhances the strength of top-down control (H2); nutrient enrichment lessens the strength of top-down control (H3); increasing zooplankton taxonomic diversity enhances the strength of top-down control (H4); increasing fish predation decreases the strength of top-down control of zooplankton on phytoplankton through trophic cascade (H5); increasing temperature intensifies the strength of top-down control (H6). 3. The results of univariate analyses support the hypotheses based on zooplankton size diversity (H1), zooplankton size spectrum (H2), nutrient (H3) and zooplankton taxonomic diversity (H4), but not the hypotheses based on fish predation (H5) and temperature (H6). More in-depth analyses indicate that zooplankton size diversity is the most important factor in determining the strength of top-down control on phytoplankton in the East China Sea. 4. Our results suggest a new potential mechanism that increasing predator size diversity enhances the strength of top-down control on prey through diet niche partitioning. This mechanism can be explained by the optimal predator-prey body-mass ratio concept. Suppose each size group of zooplankton predators has its own optimal phytoplankton prey size, increasing size diversity of zooplankton would promote diet niche partitioning of predators

  4. Spatial patterns of littoral zooplankton assemblages along a salinity gradient in a brackish sea: A functional diversity perspective

    NASA Astrophysics Data System (ADS)

    Helenius, Laura K.; Leskinen, Elina; Lehtonen, Hannu; Nurminen, Leena

    2017-11-01

    The distribution patterns and diversity of littoral zooplankton are both key baseline information for understanding the functioning of coastal ecosystems, and for identifying the mechanisms by which the impacts of recently increased eutrophication are transferred through littoral food webs. In this study, zooplankton community structure and diversity along a shallow coastal area of the northern Baltic Sea were determined in terms of horizontal environmental gradients. Spatial heterogeneity of the zooplankton community was examined along the gradient. Altogether 31 sites in shallow sandy bays on the coast of southwest Finland were sampled in the summer periods of 2009 and 2010 for zooplankton and environmental variables (surface water temperature, salinity, turbidity, wave exposure, macrophyte coverage, chlorophyll a and nutrients). Zooplankton diversity was measured as both taxonomic as well as functional diversity, using trait-based classification of planktonic crustaceans. Salinity, and to a lesser extent turbidity and temperature, were found to be the main predictors of the spatial patterns and functional diversity of the zooplankton community. Occurrence of cyclopoid copepods, as well as abundances of the calanoid copepod genus Acartia and the rotifer genus Keratella were found to be key factors in differentiating sites along the gradient. As far as we know, this is the first extensive study of functional diversity in Baltic Sea coastal zooplankton communities.

  5. A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)

    NASA Astrophysics Data System (ADS)

    Bucklin, Ann; Ortman, Brian D.; Jennings, Robert M.; Nigro, Lisa M.; Sweetman, Christopher J.; Copley, Nancy J.; Sutton, Tracey; Wiebe, Peter H.

    2010-12-01

    Species diversity of the metazoan holozooplankton assemblage of the Sargasso Sea, Northwest Atlantic Ocean, was examined through coordinated morphological taxonomic identification of species and DNA sequencing of a ˜650 base-pair region of mitochondrial cytochrome oxidase I (mtCOI) as a DNA barcode (i.e., short sequence for species recognition and discrimination). Zooplankton collections were made from the surface to 5,000 meters during April, 2006 on the R/V R.H. Brown. Samples were examined by a ship-board team of morphological taxonomists; DNA barcoding was carried out in both ship-board and land-based DNA sequencing laboratories. DNA barcodes were determined for a total of 297 individuals of 175 holozooplankton species in four phyla, including: Cnidaria (Hydromedusae, 4 species; Siphonophora, 47); Arthropoda (Amphipoda, 10; Copepoda, 34; Decapoda, 9; Euphausiacea, 10; Mysidacea, 1; Ostracoda, 27); and Mollusca (Cephalopoda, 8; Heteropoda, 6; Pteropoda, 15); and Chaetognatha (4). Thirty species of fish (Teleostei) were also barcoded. For all seven zooplankton groups for which sufficient data were available, Kimura-2-Parameter genetic distances were significantly lower between individuals of the same species (mean=0.0114; S.D. 0.0117) than between individuals of different species within the same group (mean=0.3166; S.D. 0.0378). This difference, known as the barcode gap, ensures that mtCOI sequences are reliable characters for species identification for the oceanic holozooplankton assemblage. In addition, DNA barcodes allow recognition of new or undescribed species, reveal cryptic species within known taxa, and inform phylogeographic and population genetic studies of geographic variation. The growing database of "gold standard" DNA barcodes serves as a Rosetta Stone for marine zooplankton, providing the key for decoding species diversity by linking species names, morphology, and DNA sequence variation. In light of the pivotal position of zooplankton in ocean

  6. Variations in the structural and functional diversity of zooplankton over vertical and horizontal environmental gradients en route to the Arctic Ocean through the Fram Strait.

    PubMed

    Gluchowska, Marta; Trudnowska, Emilia; Goszczko, Ilona; Kubiszyn, Anna Maria; Blachowiak-Samolyk, Katarzyna; Walczowski, Waldemar; Kwasniewski, Slawomir

    2017-01-01

    A multi-scale approach was used to evaluate which spatial gradient of environmental variability is the most important in structuring zooplankton diversity in the West Spitsbergen Current (WSC). The WSC is the main conveyor of warm and biologically rich Atlantic water to the Arctic Ocean through the Fram Strait. The data set included 85 stratified vertical zooplankton samples (obtained from depths up to 1000 metres) covering two latitudinal sections (76°30'N and 79°N) located across the multi-path WSC system. The results indicate that the most important environmental variables shaping the zooplankton structural and functional diversity and standing stock variability are those associated with depth, whereas variables acting in the horizontal dimension are of lesser importance. Multivariate analysis of the zooplankton assemblages, together with different univariate descriptors of zooplankton diversity, clearly illustrated the segregation of zooplankton taxa in the vertical plane. The epipelagic zone (upper 200 m) hosted plentiful, Oithona similis-dominated assemblages with a high proportion of filter-feeding zooplankton. Although total zooplankton abundance declined in the mesopelagic zone (200-1000 m), zooplankton assemblages in that zone were more diverse and more evenly distributed, with high contributions from both herbivorous and carnivorous taxa. The vertical distribution of integrated biomass (mg DW m-2) indicated that the total zooplankton biomass in the epipelagic and mesopelagic zones was comparable. Environmental gradients acting in the horizontal plane, such as the ones associated with different ice cover and timing of the spring bloom, were reflected in the latitudinal variability in protist community structure and probably caused differences in succession in the zooplankton community. High abundances of Calanus finmarchicus in the WSC core branch suggest the existence of mechanisms advantageous for higher productivity or/and responsible for physical

  7. Predicting temporal variation in zooplankton beta diversity is challenging.

    PubMed

    Lopes, Vanessa Guimarães; Castelo Branco, Christina W; Kozlowsky-Suzuki, Betina; Sousa-Filho, Izidro F; Souza, Leonardo Coimbra E; Bini, Luis Mauricio

    2017-01-01

    Beta diversity, the spatial variation in species composition, has been related to different explanatory variables, including environmental heterogeneity, productivity and connectivity. Using a long-term time series of zooplankton data collected over 62 months in a tropical reservoir (Ribeirão das Lajes Reservoir, Rio de Janeiro State, Brazil), we tested whether beta diversity (as measured across six sites distributed along the main axis of the reservoir) was correlated with environmental heterogeneity (spatial environmental variation in a given month), chlorophyll-a concentration (a surrogate for productivity) and water level. We did not found evidence for the role of these predictors, suggesting the need to reevaluate predictions or at least to search for better surrogates of the processes that hypothetically control beta diversity variation. However, beta diversity declined over time, which is consistent with the process of biotic homogenization, a worldwide cause of concern.

  8. Diversity-dependent evolutionary rates in early Palaeozoic zooplankton.

    PubMed

    Foote, Michael; Cooper, Roger A; Crampton, James S; Sadler, Peter M

    2018-02-28

    The extent to which biological diversity affects rates of diversification is central to understanding macroevolutionary dynamics, yet no consensus has emerged on the importance of diversity-dependence of evolutionary rates. Here, we analyse the species-level fossil record of early Palaeozoic graptoloids, documented with high temporal resolution, to test directly whether rates of diversification were influenced by levels of standing diversity within this major clade of marine zooplankton. To circumvent the statistical regression-to-the-mean artefact, whereby higher- and lower-than-average values of diversity tend to be followed by negative and positive diversification rates, we construct a non-parametric, empirically scaled, diversity-independent null model by randomizing the observed diversification rates with respect to time. Comparing observed correlations between diversity and diversification rate to those expected from this diversity-independent model, we find evidence for negative diversity-dependence, accounting for up to 12% of the variance in diversification rate, with maximal correlation at a temporal lag of approximately 1 Myr. Diversity-dependence persists throughout the Ordovician and Silurian, despite a major increase in the strength and frequency of extinction and speciation pulses in the Silurian. By contrast to some previous work, we find that diversity-dependence affects rates of speciation and extinction nearly equally on average, although subtle differences emerge when we compare the Ordovician and Silurian. © 2018 The Author(s).

  9. Predicting temporal variation in zooplankton beta diversity is challenging

    PubMed Central

    Castelo Branco, Christina W.; Kozlowsky-Suzuki, Betina; Sousa-Filho, Izidro F.; Souza, Leonardo Coimbra e; Bini, Luis Mauricio

    2017-01-01

    Beta diversity, the spatial variation in species composition, has been related to different explanatory variables, including environmental heterogeneity, productivity and connectivity. Using a long-term time series of zooplankton data collected over 62 months in a tropical reservoir (Ribeirão das Lajes Reservoir, Rio de Janeiro State, Brazil), we tested whether beta diversity (as measured across six sites distributed along the main axis of the reservoir) was correlated with environmental heterogeneity (spatial environmental variation in a given month), chlorophyll-a concentration (a surrogate for productivity) and water level. We did not found evidence for the role of these predictors, suggesting the need to reevaluate predictions or at least to search for better surrogates of the processes that hypothetically control beta diversity variation. However, beta diversity declined over time, which is consistent with the process of biotic homogenization, a worldwide cause of concern. PMID:29095892

  10. [Effects of environmental factors on β diversity of zooplankton community in thermal discharge seawaters near Guohua Power Plant in Xiangshan Bay, Zhejiang, China].

    PubMed

    Zhu, Yi-feng; Dai, Mei-xia; Zhou, Xiao-hong; Lin, Xia; Mao, Shuo-qian; Yan, Xiao-jun

    2015-08-01

    Zooplankton samples were seasonally collected at 10 stations in thermal discharge seawaters near Guohua Power Plant in Xiangshan Bay. The abundance data from these samples were pooled and further combined with field environmental factors, then generalised dissimilarity modelling (GDM) was used to explore the effects of environmental factors on β diversity of zooplankton community. The results showed that altogether 95 species of zooplankton belonging to 14 taxa were found. In these taxa, small zooplankton with 62.6% of abundance was the main taxa, while copepods dominated in adult groups, which abundance accounted for 35.3%. According to Whittaker's definition and additive partition, a diversity accounted for 36.3% and β diversity 63.7%. Environmental factors explained 43.8% of β diversity, and geographical distance between sampling sites had no effect on β diversity. However, there were still 19.9% of β diversity remained to be explained. After GDM fitting, there were nine environmental variables affecting zooplankton β diversity and explaining 68.8% of β diversity. The variables contributing to β diversity from high to low were seasonal water temperature, dissolved oxygen, seawater temperature increment, conductivity, suspended particulate matter, salinity, transparency, water depth and redox potential, respectively. Seasonal water temperature, dissolved oxygen and seawater temperature increment were the most important factors for driving β diversity changes, and accounted for 23.9%, 13.7% and 9.7% of absolute contribution to the interpretable portion of the β diversity, respectively. When seasonal water temperature, dissolved oxygen and seawater temperature increment were below 25 °C, greater than 5 mg · L(-1) and over 1 °C, respectively, β diversity rapidly increased with the increasing variable gradients. Furthermore, other predictors had little effect on β diversity.

  11. Metagenetic Sequencing of Zooplankton Communities in the High-Diversity Central North Pacific

    NASA Astrophysics Data System (ADS)

    Matthews, S. A.; van Woudenberg, L.; Iacchei, M.; Lenz, P. H.; Goetze, E.

    2016-02-01

    Marine zooplankton are important intermediate trophic level consumers in the ocean, and the subtropical North Pacific holds global maxima in species diversity for these communities. Zooplankton assemblages in this region include several species complexes, with many understudied and morphologically cryptic species. We used metagenetic sequencing to characterize zooplankton community composition across depth (0-1500m) at an open ocean time series site in the central North Pacific (Station ALOHA), using depth-stratified 1m2 MOCNESS samples that were size fractionated into 5 size classes (0.2-0.5 mm, 0.5-1 mm, 1-2 mm, 2-5 mm, >5 mm). Our goals were to quantify the fraction of the community that is currently undescribed, identify taxonomic groups that contain large numbers of undescribed species and may be important to biogeochemical cycling in the ocean, and establish a metagenetic method that can be used to effectively characterize the species richness of epipelagic and mesopelagic communities in this region. Amplicons from several DNA loci, including mitochondrial cytochrome c oxidase subunit I and 12S rRNA, and nuclear 18S and 28S rRNA genes were sequenced on the MiSeq Illumina platform to characterize community composition. We evaluate species composition across metagenetic marker regions, pelagic depth zones, day and night-time MOCNESS tows, and compare our findings with prior species lists from the region. Our results are an important contribution to establishing standardized metagenetic methods for marine zooplankton communities.

  12. Zooplankton taxonomic and size diversity in Mediterranean coastal lagoons (NE Iberian Peninsula): Influence of hydrology, nutrient composition, food resource availability and predation

    NASA Astrophysics Data System (ADS)

    Badosa, Anna; Boix, Dani; Brucet, Sandra; López-Flores, Rocío; Gascón, Stéphanie; Quintana, Xavier D.

    2007-01-01

    The influence of hydrology, nutrient composition, food resource availability and predation on zooplankton taxonomic and size diversity was analyzed in several shallow lagoons of a Mediterranean salt marsh (Baix Ter Wetlands, NE Iberian Peninsula). Taxonomic diversity correlated better with variables related to the trophic state, such as nutrient concentrations, whereas size diversity was more sensitive to fish predation. However, the fish predation influence on the size diversity was only significant when fishes reached high densities. Under low fish densities no predation effects were observed and the food resource availability (FR a) appeared to be more important in structuring the zooplankton community. Nevertheless, the two diversity indexes showed opposite responses to this factor. With increasing FR a the taxonomic diversity increased and the size diversity decreased. Neither taxonomic nor size diversity of the zooplankton community correlated with other physical or biotic factors such as hydrological variability or macroinvertebrate predation. The relationships found suggest that the size diversity is mainly related to biotic interactions, such as fish predation or inter/intraspecific competition, while the taxonomic diversity appears to be more sensitive to abiotic factors such as the nutrient composition.

  13. Latitudinal species diversity gradient of marine zooplankton for the last three million years

    USGS Publications Warehouse

    Yasuhara, Moriaki; Hunt, Gene; Dowsett, Harry J.; Robinson, Marci M.; Stoll, Danielle K.

    2012-01-01

    High tropical and low polar biodiversity is one of the most fundamental patterns characterising marine ecosystems, and the influence of temperature on such marine latitudinal diversity gradients is increasingly well documented. However, the temporal stability of quantitative relationships among diversity, latitude and temperature is largely unknown. Herein we document marine zooplankton species diversity patterns at four time slices [modern, Last Glacial Maximum (18 000 years ago), last interglacial (120 000 years ago), and Pliocene (~3.3–3.0 million years ago)] and show that, although the diversity-latitude relationship has been dynamic, diversity-temperature relationships are remarkably constant over the past three million years. These results suggest that species diversity is rapidly reorganised as species' ranges respond to temperature change on ecological time scales, and that the ecological impact of future human-induced temperature change may be partly predictable from fossil and paleoclimatological records.

  14. Zooplankton community analysis in the Changjiang River estuary by single-gene-targeted metagenomics

    NASA Astrophysics Data System (ADS)

    Cheng, Fangping; Wang, Minxiao; Li, Chaolun; Sun, Song

    2014-07-01

    DNA barcoding provides accurate identification of zooplankton species through all life stages. Single-gene-targeted metagenomic analysis based on DNA barcode databases can facilitate longterm monitoring of zooplankton communities. With the help of the available zooplankton databases, the zooplankton community of the Changjiang (Yangtze) River estuary was studied using a single-gene-targeted metagenomic method to estimate the species richness of this community. A total of 856 mitochondrial cytochrome oxidase subunit 1 (cox1) gene sequences were determined. The environmental barcodes were clustered into 70 molecular operational taxonomic units (MOTUs). Forty-two MOTUs matched barcoded marine organisms with more than 90% similarity and were assigned to either the species (similarity>96%) or genus level (similarity<96%). Sibling species could also be distinguished. Many species that were overlooked by morphological methods were identified by molecular methods, especially gelatinous zooplankton and merozooplankton that were likely sampled at different life history phases. Zooplankton community structures differed significantly among all of the samples. The MOTU spatial distributions were influenced by the ecological habits of the corresponding species. In conclusion, single-gene-targeted metagenomic analysis is a useful tool for zooplankton studies, with which specimens from all life history stages can be identified quickly and effectively with a comprehensive database.

  15. UV radiation and freshwater zooplankton: damage, protection and recovery

    PubMed Central

    Rautio, Milla; Tartarotti, Barbara

    2011-01-01

    While many laboratory and field studies show that zooplankton are negatively affected when exposed to high intensities of ultraviolet radiation (UVR), most studies also indicate that zooplankton are well adapted to cope with large variations in their UVR exposure in the pelagic zone of lakes. The response mechanisms of zooplankton are diverse and efficient and may explain the success and richness of freshwater zooplankton in optically variable waters. While no single behavioural or physiological protection mechanism seems to be superior, and while several unexplained and contradictory patterns exist in zooplankton UVR ecology, recent increases in our understanding are consistent with UVR playing an important role for zooplankton. This review examines the variability in freshwater zooplankton responses to UVR, with a focus on crustacean zooplankton (Cladocera and Copepoda). We present an overview of UVR-induced damages, and the protection and recovery mechanisms freshwater zooplankton use when exposed to UVR. We review the current knowledge of UVR impact on freshwater zooplankton at species and community levels, and discuss briefly how global change over the last three decades has influenced the UVR milieu in lakes. PMID:21516254

  16. Zooplankton and the Ocean Carbon Cycle.

    PubMed

    Steinberg, Deborah K; Landry, Michael R

    2017-01-03

    Marine zooplankton comprise a phylogenetically and functionally diverse assemblage of protistan and metazoan consumers that occupy multiple trophic levels in pelagic food webs. Within this complex network, carbon flows via alternative zooplankton pathways drive temporal and spatial variability in production-grazing coupling, nutrient cycling, export, and transfer efficiency to higher trophic levels. We explore current knowledge of the processing of zooplankton food ingestion by absorption, egestion, respiration, excretion, and growth (production) processes. On a global scale, carbon fluxes are reasonably constrained by the grazing impact of microzooplankton and the respiratory requirements of mesozooplankton but are sensitive to uncertainties in trophic structure. The relative importance, combined magnitude, and efficiency of export mechanisms (mucous feeding webs, fecal pellets, molts, carcasses, and vertical migrations) likewise reflect regional variability in community structure. Climate change is expected to broadly alter carbon cycling by zooplankton and to have direct impacts on key species.

  17. Zooplankton trophic niches respond to different water types of the western Tasman Sea: A stable isotope analysis

    NASA Astrophysics Data System (ADS)

    Henschke, Natasha; Everett, Jason D.; Suthers, Iain M.; Smith, James A.; Hunt, Brian P. V.; Doblin, Martina A.; Taylor, Matthew D.

    2015-10-01

    The trophic relationships of 21 species from an oceanic zooplankton community were studied using stable isotopes of carbon and nitrogen. Zooplankton and suspended particulate organic matter (POM) were sampled in three different water types in the western Tasman Sea: inner shelf (IS), a cold core eddy (CCE) and a warm core eddy (WCE). δ15N values ranged from 3.9‰ for the parasitic copepod Sapphirina augusta to 10.2‰ for the euphausiid, Euphausia spinifera. δ13C varied from -22.6 to -19.4‰ as a result of the copepod Euchirella curticauda and E. spinifera. The isotopic composition of POM varied significantly among water types; as did the trophic enrichment of zooplankton over POM, with the lowest enrichment in the recently upwelled IS water type (0.5‰) compared to the warm core eddy (1.6‰) and cold core eddy (2.7‰). The WCE was an oligotrophic environment and was associated with an increased trophic level for omnivorous zooplankton (copepods and euphausiids) to a similar level as carnivorous zooplankton (chaetognaths). Therefore carnivory in zooplankton can increase in response to lower abundance and reduced diversity in their phytoplankton and protozoan prey. Trophic niche width comparisons across three zooplankton species: the salp Thalia democratica, the copepod Eucalanus elongatus and the euphausiid Thysanoessa gregaria, indicated that both niche partitioning and competition can occur within the zooplankton community. We have shown that trophic relationships among the zooplankton are dynamic and respond to different water types. The changes to the zooplankton isotopic niche, however, were still highly variable as result of oceanographic variation within water types.

  18. The deep-sea zooplankton of the North, Central, and South Atlantic: Biomass, abundance, diversity

    NASA Astrophysics Data System (ADS)

    Vereshchaka, Alexander; Abyzova, Galina; Lunina, Anastasia; Musaeva, Eteri

    2017-03-01

    Ocean-scale surveys of vertical distribution of the zooplankton from the surface to the bathypelagic zone along transects are quite rare in the North Atlantic and absent in the Equatorial and South Atlantic. We present the first deep-sea quantitative survey of the zooplankton in the Equatorial and South Atlantic, analyze the interaction between environment (depth, water masses, surface productivity) and zooplankton abundance and biomass, and assess the biodiversity and role of copepods in various deep strata. Samples were taken at 20 sites along a submeridional transect between 40°N and 30°S at four discrete depth strata: epi- meso-, upper- and lower- bathypelagic. A closing Bogorov-Rass plankton net (1 m2 opening, 500 μm mesh size, towed at a speed of 1 m s-1) was used and three major plankton groups were defined: non-gelatinous mesozooplankton (mainly copepods and chaetognaths; 1-30 mm length), gelatinous mesozooplankton (mainly siphonophorans, medudae and salps; individual or zooid; 1-30 mm length) and macroplankton (mainly shrimps; over 30 mm length). Over 300 plankton taxa were identified, among which 243 belonged to Copepoda. Two-dimensional distribution (latitude versus depth zone) of major group biomass, total copepod abundance, and abundance of dominant species is presented as well as distribution of biodiversity parameters (number of species, Shannon and 'dominance' indices). Biomass and abundance of all major groups were depth-dependent. The number of taxa (N) was depended on surface productivity, diversity of the communities was strongly linked to depth, whilst 'evenness' was independant upon both variables. Each of depth strata was inhabited by distinct copepod assemblages, which significantly differed from each other. The paper is concluded with brief descriptions of the deep Atlantic plankton communities from studied strata.

  19. A decade of predatory control of zooplankton species composition of Lake Michigan

    USGS Publications Warehouse

    Makarewicz, Joseph C.; Bertram, Paul; Lewis, Theodore; Brown, Edward H.

    1995-01-01

    From 1983 to 1992, 71 species representing 38 genera from the Calanoida, Cladocera, Cyclopoida, Mysidacea, Rotifera, Mollusca and Harpacticoida comprised the offshore zooplankton community of Lake Michigan. Our data demonstrate that the composition and abundance of the calanoid community after 1983 is not unlike that of 1960s and that species diversity of the calanoid community is more diverse than the cladoceran community in the 1990s as compared to the early 1980s. Even though the relative biomass of the cladocerans has remained similar over the 1983-1993 period, the species diversity and evenness of the Cladocera community in the early 1990s is unlike anything that has been previously reported for Lake Michigan. Cladocera dominance is centered in one species, Daphnia galeata mendotae, and only three species of Cladocera were observed in the pelagic region of the lake in 1991 and 1992. Nutrient levels, phytoplankton biomass, and the abundance of planktivorous alewife and bloater chub and Bythotrephes are examined as possible causes of these changes in zooplankton species composition. The increase in Rotifera biomass, but not Crustacea, was correlated with an increase in relative biomass of unicellular algae. Food web models suggest Bythotrephes will cause Lake Michigan's plankton to return to a community similar to that of the 1970s; that is Diaptomus dominated. Such a change has occurred. However, correlational analysis suggest that alewife and bloater chubs (especially juveniles) are affecting size and biomass of larger species of zooplankton as well as Bythotrephes.

  20. Characterization of Lake Michigan coastal lakes using zooplankton assemblages

    USGS Publications Warehouse

    Whitman, Richard L.; Nevers, Meredith B.; Goodrich, Maria L.; Murphy, Paul C.; Davis, Bruce M.

    2004-01-01

    Zooplankton assemblages and water quality were examined bi-weekly from 17 April to 19 October 1998 in 11 northeastern Lake Michigan coastal lakes of similar origin but varied in trophic status and limnological condition. All lakes were within or adjacent to Sleeping Bear Dunes National Lakeshore, Michigan. Zooplankton (principally microcrustaceans and rotifers) from triplicate Wisconsin net (80 I?m) vertical tows taken at each lake's deepest location were analyzed. Oxygen-temperature-pH-specific conductivity profiles and surface water quality were concurrently measured. Bray-Curtis similarity analysis showed small variations among sample replicates but large temporal differences. The potential use of zooplankton communities for environmental lake comparisons was evaluated by means of BIOENV (Primer 5.1) and principal component analyses. Zooplankton analyzed at the lowest identified taxonomic level yielded greatest sensitivity to limnological variation. Taxonomic and ecological aggregations of zooplankton data performed comparably, but less well than the finest taxonomic analysis. Secchi depth, chlorophyll a, and sulfate concentrations combined to give the best correlation with patterns of variation in the zooplankton data set. Principal component analysis of these variables revealed trophic status as the most influential major limnological gradient among the study lakes. Overall, zooplankton abundance was an excellent indicator of variation in trophic status.

  1. Indicators: Zooplankton

    EPA Pesticide Factsheets

    Zooplankton are small, free-floating aquatic microorganisms including crustaceans, rotifers, open water insect larvae, and aquatic mites. The zooplankton community is composed of both primary consumers and secondary consumers.

  2. Seasonal Phenology of Zooplankton Composition in the Southeastern Bering Sea, 2008-2010

    NASA Astrophysics Data System (ADS)

    Eisner, L. B.; Pinchuk, A. I.; Harpold, C.; Siddon, E. C.; Mier, K.

    2016-02-01

    The availability of large crustacean zooplankton prey is critical to the condition and survival of forage fish (e.g., age-0 Walleye Pollock), sea birds, and marine mammals in the eastern Bering Sea. Zooplankton community composition and abundances of large lipid-rich copepods (e.g., Calanus spp.) have been evaluated for single seasons, but few studies have investigated seasonal variations in this region. Here, we investigate seasonal changes in taxa (community structure), stage composition (where appropriate), and diversity from spring through late summer/early fall over three consecutive colder than average years. Zooplankton taxonomic samples were collected with oblique bongo tows over the water column during spring (April-May), mid-summer (June-July) and late summer/early fall (August-September) across the southeastern Bering Sea shelf in 2008-2010. Zooplankton abundances were evaluated by oceanographic region, season and year, and related to water mass characteristics (temperature and salinity) and other environmental drivers. Finally, zooplankton phenology was compared to changes in forage fish composition to determine potential overlap of fish predators and zooplankton prey.

  3. Community composition, abundance and biomass of zooplankton in Zhangzi Island waters, Northern Yellow Sea

    NASA Astrophysics Data System (ADS)

    Yin, Jiehui; Zhang, Guangtao; Li, Chaolun; Wang, Shiwei; Zhao, Zengxia; Wan, Aiyong

    2017-09-01

    Samples were collected monthly from the sea area around Zhangzi Island, northern Yellow Sea, from July 2009 to June 2010. Vertical net towing was used to examine spatial and temporal variability in zooplankton abundance and biomass. Overall, Calanus sinicus and Saggita crassa were the dominant species found during the study period, while the amphipod Themisto gracilipes was dominant in winter and spring. Vast numbers of the ctenophore species of the genus Beroe were found in October and November. It was not possible to count them, but they constituted a large portion of the total zooplankton biomass. Zooplankton species diversity was highest in October, and species evenness was highest in April. Zooplankton abundance (non-jellyfish) and biomass were highest in June and lowest in August, with annual averages of 131.3 ind./m³ and 217.5 mg/m³, respectively. Water temperature may be responsible for the variations in zooplankton abundance and biomass. Beroe biomass was negatively correlated with other zooplankton abundance. Longterm investigations will be carried out to learn more about the influence of the environment on zooplankton assemblages.

  4. Indigenous species barcode database improves the identification of zooplankton

    PubMed Central

    Yang, Jianghua; Zhang, Wanwan; Sun, Jingying; Xie, Yuwei; Zhang, Yimin; Burton, G. Allen; Yu, Hongxia

    2017-01-01

    Incompleteness and inaccuracy of DNA barcode databases is considered an important hindrance to the use of metabarcoding in biodiversity analysis of zooplankton at the species-level. Species barcoding by Sanger sequencing is inefficient for organisms with small body sizes, such as zooplankton. Here mitochondrial cytochrome c oxidase I (COI) fragment barcodes from 910 freshwater zooplankton specimens (87 morphospecies) were recovered by a high-throughput sequencing platform, Ion Torrent PGM. Intraspecific divergence of most zooplanktons was < 5%, except Branchionus leydign (Rotifer, 14.3%), Trichocerca elongate (Rotifer, 11.5%), Lecane bulla (Rotifer, 15.9%), Synchaeta oblonga (Rotifer, 5.95%) and Schmackeria forbesi (Copepod, 6.5%). Metabarcoding data of 28 environmental samples from Lake Tai were annotated by both an indigenous database and NCBI Genbank database. The indigenous database improved the taxonomic assignment of metabarcoding of zooplankton. Most zooplankton (81%) with barcode sequences in the indigenous database were identified by metabarcoding monitoring. Furthermore, the frequency and distribution of zooplankton were also consistent between metabarcoding and morphology identification. Overall, the indigenous database improved the taxonomic assignment of zooplankton. PMID:28977035

  5. The Lake Ontario zooplankton community before (1987-1991) and after (2001-2005) invasion-induced ecosystem change

    USGS Publications Warehouse

    Stewart, T.J.; Johannsson, O.E.; Holeck, K.; Sprules, W.G.; O'Gorman, R.

    2010-01-01

    We assessed changes in Lake Ontario zooplankton biomass, production, and community composition before (1987–1991) and after (2001–2005) invasion-induced ecosystem changes. The ecosystem changes were associated with establishment of invasive dreissenid mussels and invasive predatory cladocerans (Bythotrephes and Cercopagis). Whole-lake total epilimnetic plus metalimnetic zooplankton production declined by approximately half from 42.45 (g dry wt∙m−2∙ year−1) during 1987–1991 to 21.91 (g dry wt∙m−2∙ year−1) in 2003 and averaged 21.01 (g dry wt∙m−2∙ year−1) during 2001–2005. Analysis of two independent data sets indicates that the mean biomass and biomass proportion of cyclopoid copepods declined while the same measures increased for the invasive predatory cladocerans. Changes in means and proportions of all other zooplankton groups were not consistent between the data sets. Cyclopoid copepod biomass and production declined by factors ranging from 3.6 to 5.7. Invasive predatory cladoceran biomass averaged from 5.0% to 8.0% of the total zooplankton biomass. The zooplankton community was otherwise resilient to the invasion-induced disruption as zooplankton species richness and diversity were unaffected. Zooplankton production was likely reduced by declines in primary productivity but may have declined further due to increased predation by alewives and invasive predatory cladocerans. Shifts in zooplankton community structure were consistent with increased predation pressure on cyclopoid copepods by alewives and invasive predatory cladocerans. Predicted declines in the proportion of small cladocerans were not evident. This study represents the first direct comparison of changes in Lake Ontario zooplankton production before and after the invasion-induced disruption and will be important to food web-scale investigations of invasion effects.

  6. Ecosystem Functions across Trophic Levels Are Linked to Functional and Phylogenetic Diversity

    PubMed Central

    Thompson, Patrick L.; Davies, T. Jonathan; Gonzalez, Andrew

    2015-01-01

    In experimental systems, it has been shown that biodiversity indices based on traits or phylogeny can outperform species richness as predictors of plant ecosystem function. However, it is unclear whether this pattern extends to the function of food webs in natural ecosystems. Here we tested whether zooplankton functional and phylogenetic diversity explains the functioning of 23 natural pond communities. We used two measures of ecosystem function: (1) zooplankton community biomass and (2) phytoplankton abundance (Chl a). We tested for diversity-ecosystem function relationships within and across trophic levels. We found a strong correlation between zooplankton diversity and ecosystem function, whereas local environmental conditions were less important. Further, the positive diversity-ecosystem function relationships were more pronounced for measures of functional and phylogenetic diversity than for species richness. Zooplankton and phytoplankton biomass were best predicted by different indices, suggesting that the two functions are dependent upon different aspects of diversity. Zooplankton community biomass was best predicted by zooplankton trait-based functional richness, while phytoplankton abundance was best predicted by zooplankton phylogenetic diversity. Our results suggest that the positive relationship between diversity and ecosystem function can extend across trophic levels in natural environments, and that greater insight into variation in ecosystem function can be gained by combining functional and phylogenetic diversity measures. PMID:25693188

  7. Ecosystem functions across trophic levels are linked to functional and phylogenetic diversity.

    PubMed

    Thompson, Patrick L; Davies, T Jonathan; Gonzalez, Andrew

    2015-01-01

    In experimental systems, it has been shown that biodiversity indices based on traits or phylogeny can outperform species richness as predictors of plant ecosystem function. However, it is unclear whether this pattern extends to the function of food webs in natural ecosystems. Here we tested whether zooplankton functional and phylogenetic diversity explains the functioning of 23 natural pond communities. We used two measures of ecosystem function: (1) zooplankton community biomass and (2) phytoplankton abundance (Chl a). We tested for diversity-ecosystem function relationships within and across trophic levels. We found a strong correlation between zooplankton diversity and ecosystem function, whereas local environmental conditions were less important. Further, the positive diversity-ecosystem function relationships were more pronounced for measures of functional and phylogenetic diversity than for species richness. Zooplankton and phytoplankton biomass were best predicted by different indices, suggesting that the two functions are dependent upon different aspects of diversity. Zooplankton community biomass was best predicted by zooplankton trait-based functional richness, while phytoplankton abundance was best predicted by zooplankton phylogenetic diversity. Our results suggest that the positive relationship between diversity and ecosystem function can extend across trophic levels in natural environments, and that greater insight into variation in ecosystem function can be gained by combining functional and phylogenetic diversity measures.

  8. Amino acid composition reveals functional diversity of zooplankton in tropical lakes related to geography, taxonomy and productivity.

    PubMed

    Aranguren-Riaño, Nelson J; Guisande, Cástor; Shurin, Jonathan B; Jones, Natalie T; Barreiro, Aldo; Duque, Santiago R

    2018-07-01

    Variation in resource use among species determines their potential for competition and co-existence, as well as their impact on ecosystem processes. Planktonic crustaceans consume a range of micro-organisms that vary among habitats and species, but these differences in resource consumption are difficult to characterize due to the small size of the organisms. Consumers acquire amino acids from their diet, and the composition of tissues reflects both the use of different resources and their assimilation in proteins. We examined the amino acid composition of common crustacean zooplankton from 14 tropical lakes in Colombia in three regions (the Amazon floodplain, the eastern range of the Andes, and the Caribbean coast). Amino acid composition varied significantly among taxonomic groups and the three regions. Functional richness in amino acid space was greatest in the Amazon, the most productive region, and tended to be positively related to lake trophic status, suggesting the niche breadth of the community could increase with ecosystem productivity. Functional evenness increased with lake trophic status, indicating that species were more regularly distributed within community-wide niche space in more productive lakes. These results show that zooplankton resource use in tropical lakes varies with both habitat and taxonomy, and that lake productivity may affect community functional diversity and the distribution of species within niche space.

  9. Protocol for Automated Zooplankton Analysis

    DTIC Science & Technology

    2010-01-01

    on maximum dimension on the smallest axis: organisms > 50 microns (urn) (nominally zooplankton), organisms > 10 um to < 50 um (nominally protists ...viability of protists . Recent work has focused on performing measurements at a variety of geographic locations to demonstrate that these stains...provide a location-independent means to identify viable protists in test samples. NRL recommends staining samples with a combination of two vital stains

  10. Fate of thiamethoxam in mesocosms and response of the zooplankton community.

    PubMed

    Lobson, C; Luong, K; Seburn, D; White, M; Hann, B; Prosser, R S; Wong, C S; Hanson, M L

    2018-05-14

    Thiamethoxam is a neonicotinoid insecticide that can reach wetlands in agro-ecosystems through runoff. The fate and effects of thiamethoxam on non-target organisms in shallow wetland ecosystems have not been well characterized. To this end, a mesocosm study was conducted with a focus on characterizing zooplankton community responses. A single pulse application of thiamethoxam (0, 25, 50, 100, 250, and 500 μg/L; n = 3) was applied to experimental systems and monitored for 8 weeks. The mean half-life of thiamethoxam among the different treatments was 3.7 days in the water column with concentrations of <0.8 μg/L in the majority of mesocosms by 56 days. Principal response curve analysis did not show any significant concentration-dependent differences in the zooplankton community among treatments over the course of the study. The minimum detectable difference (MDD%) values for abundance of potentially sensitive arthropod taxa (nauplius larvae, cyclopoid copepods) allowed the detections from controls as low as 42 and 59% effect, respectively. The MDD% values for total abundance of zooplankton (including the potentially less sensitive taxonomic group of Rotifera) allowed the detection from controls as low as 41% effect. There were no statistically significant differences in zooplankton abundance or diversity between control and treated mesocosms at the end of the study. There were also no statistically significant differences for individual taxa that were sustained between sampling points, or manifested as a concentration-response. We conclude that acute exposure to thiamethoxam at environmentally relevant concentrations (typically ng/L) likely does not represent a significant adverse ecological risk to wetland zooplankton community abundance and structure. Copyright © 2018 Elsevier B.V. All rights reserved.

  11. Community response of zooplankton to oceanographic changes (2002-2012) in the central/southern upwelling system of Chile

    NASA Astrophysics Data System (ADS)

    Medellín-Mora, Johanna; Escribano, Ruben; Schneider, Wolfgang

    2016-03-01

    A 10-year time series (2002-2012) at Station 18 off central/southern Chile allowed us to study variations in zooplankton along with interannual variability and trends in oceanographic conditions. We used an automated analysis program (ZooImage) to assess changes in the mesozooplankton size structure and the composition of the taxa throughout the entire community. Oceanographic conditions changed over the decade: the water column became less stratified, more saline, and colder; the mixed layer deepened; and the oxygen minimum zone became shallower during the second half of the time series (2008-2012) in comparison with the first period (2002-2007). Both the size structure and composition of the zooplankton were significantly associated with oceanographic changes. Taxonomic and size diversity of the zooplankton community increased to the more recent period. For the second period, small sized copepods (<1 mm) decreased in abundance, being replaced by larger sized (>1.5 mm) and medium size copepods (1-1.5 mm), whereas euphausiids, decapod larvae, appendicularian and ostracods increased their abundance during the second period. These findings indicated that the zooplankton community structure in this eastern boundary ecosystem was strongly influenced by variability of the upwelling process. Thus, climate-induced forcing of upwelling trends can alter the zooplankton community in this highly productive region with potential consequences for the ecosystem food web.

  12. DNA Barcoding of Zooplankton in the Hampton Roads Area: A Biodiversity Assessment

    NASA Astrophysics Data System (ADS)

    Salcedo, A.; Rodríguez, Á. E.; Gibson, D. M.

    2016-02-01

    The study of zooplankton biodiversity and distribution is crucial to understand oceanic ecosystems and anticipate the effects of climate change. Previously, identification of zooplankton relied in morphological identification employed by expert taxonomists. DNA barcoding, a technique that uses the mitochondrial DNA (mtDNA) Cytochrome Oxidase 1 (CO1) gene is widely used for taxonomic identification. Thus, this molecular technique will be used to begin a detailed characterization of zooplankton diversity, abundance and community structure in the Hampton Roads Area (HRA). Stations 1 (Jones Creek) and 3 (lower Chesapeake Bay) were sampled in June 19, 2015. Stations 1, 2 (James River), and 3 were sampled in September 2015. Zooplankton samples were collected in triplicates with a 0.5m, 200 µm mesh net. Physical parameters (dissolved oxygen, salinity, temperature and, water transparency) were measured. Species identified as Opistonema oglinum (Atlantic Thread Herring) and Paracalanus parvus copepods were found at station 3; Anchoa mitchilli and Acartia tonsa copepods were found at stations 1 and 3. This study indicates that mtDNA-CO1 barcoding is suitable to identify zooplankton to the species level and helps validate DNA barcoding as a faster, more accurate taxonomic approach. The long term objective of this project is to provide a comprehensive assessment of zooplankton in the HRA and to generate a reference record for broad monitoring programs; vital for a better understanding and management of ecologically and commercially important species.

  13. [Phytoplankton and zooplankton of the industrial reservoir R-9 (Lake Karachay)].

    PubMed

    Priakhin, E A; Triapitsina, G A; Atamaniuk, N I; Osipov, D I; Stukalov, P M; Ivanov, I A; Popova, I Ia; Akleev, A V

    2012-01-01

    Planktonic communities of the Reservoir-9 (Lake Karachay, storage reservoir of liquid medium-level radioactive waste of the Mayak Production Association) are exposed to the severe radioactive forcing (in 2010 the total beta-activity of the water was 1.8 x 10(7) Bq/L, total alpha-activity was 1.1 x 10(4) Bq/L), aswell as to the chemical contamination (level of nitrates in water 4.1 g/L). The calculated values of the absorbed dose rate were 130 Gy/day for phytoplankton and 4.0 Gy/day for zooplankton. Extremely low species diversity, the overwhelming dominance of one species (phytoplankton is close to a monoculture of ubiquitous cyanobacteria Geitlerinema amphibium, zooplankton--to a monoculture of rotifers Hexarthrafennica), wide fluctuations in numbers of algae, a low number of zooplankton were the most substantial characteristics of the plankton communities in Lake Karachay. So, plankton communities status is a sign of environmental retrogress in this ecosystem.

  14. Changes in zooplankton community, and seston and zooplankton fatty acid profiles at the freshwater/saltwater interface of the Chowan River, North Carolina

    PubMed Central

    Rinchard, Jacques; Kimmel, David G.

    2017-01-01

    The variability in zooplankton fatty acid composition may be an indicator of larval fish habitat quality as fatty acids are linked to fish larval growth and survival. We sampled an anadromous fish nursery, the Chowan River, during spring of 2013 in order to determine how the seston fatty acid composition varied in comparison with the zooplankton community composition and fatty acid composition during the period of anadromous larval fish residency. The seston fatty acid profiles showed no distinct pattern in relation to sampling time or location. The mesozooplankton community composition varied spatially and the fatty acid profiles were typical of freshwater species in April. The Chowan River experienced a saltwater intrusion event during May, which resulted in brackish water species dominating the zooplankton community and the fatty acid profile showed an increase in polyunsaturated fatty acids (PUFA), in particular eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). The saltwater intrusion event was followed by an influx of freshwater due to high precipitation levels in June. The zooplankton community composition once again became dominated by freshwater species and the fatty acid profiles shifted to reflect this change; however, EPA levels remained high, particularly in the lower river. We found correlations between the seston, microzooplankton and mesozooplankton fatty acid compositions. Salinity was the main factor correlated to the observed pattern in species composition, and fatty acid changes in the mesozooplankton. These data suggest that anadromous fish nursery habitat likely experiences considerable spatial variability in fatty acid profiles of zooplankton prey and that are correlated to seston community composition and hydrodynamic changes. Our results also suggest that sufficient prey density as well as a diverse fatty acid composition is present in the Chowan River to support larval fish production. PMID:28828262

  15. Impact of chromium and aluminium pollution on the diversity of zooplankton: a case study in the Chimaliapan wetland (Ramsar site) (Lerma basin, Mexico).

    PubMed

    García-García, Gerardo; Nandini, S; Sarma, S S S; Martínez-Jerónimo, Fernando; Jiménez-Contreras, Jorge

    2012-01-01

    Biological monitoring and the use of biotic indices are important in evaluating the health of aquatic systems. However, zooplankton are rarely included in biomonitoring protocols. We conducted a one-year study (March 2008-February 2009) at two sites from the Chimaliapan wetland, with concentrations of aluminium (Al) and chromium (Cr) above and within the permissible limits, respectively. Metals in the sediment and water were analyzed from three locations per site every two months. In addition to analyses of the abundance and diversity of rotifers, cladocerans and copepods, we sampled 11 physicochemical variables in the water and six from the sediments. The metal concentration in the polluted site (significantly above the permissible limits) ranged between 7266-8174 mg Kg(-1) of Al and 14.6-18.3 mg Kg(-1) of Cr. We found 92 species of rotifers, cladocerans and copepods. The Brillouin index for both sites ranged from 3.9-5.4, the Shannon-Wiener index from 4.2-5.5 while the Brachionus-Trichocerca ratio ranged between 1.0 and 1.7. The Wetland Zooplankton Index was significantly different among the sites; 2.63 at site 1 and 2.13 at site 2. The saprobic index was 3.2 for both sites. Data analyses using multifactorial techniques suggested that zooplankton can be used to evaluate the impact of the metals aforementioned, since these organisms are generally more sensitive than other groups and also have a high ecological relevance.

  16. An evaluation of the zooplankton community at the Sheboygan River Area of Concern and non-Area of Concern comparison sites in western Lake Michigan rivers and harbors in 2016

    USGS Publications Warehouse

    Olds, Hayley T.; Scudder Eikenberry, Barbara C.; Burns, Daniel J.; Bell, Amanda H.

    2017-12-22

    The Great Lakes Areas of Concern (AOCs) are considered to be the most severely degraded areas within the Great Lakes basin, as defined in the Great Lakes Water Quality Agreement and amendments. Among the 43 designated AOCs are four Lake Michigan AOCs in the State of Wisconsin. The smallest of these AOCs is the Sheboygan River AOC, which was designated as an AOC because of sediment contamination from polychlorinated biphenyl compounds (PCBs), polycyclic aromatic hydrocarbons (PAHs), volatile organic compounds (VOCs), and heavy metals. The Sheboygan River AOC has 9 of 14 possible Beneficial Use Impairments (BUIs), which must be addressed to improve overall water-quality, and to ultimately delist the AOC. One of the BUIs associated with this AOC is the “degradation of phytoplankton and zooplankton populations,” which can be removed from the list of impairments when it has been determined that zooplankton community composition and structure at the AOC do not differ significantly from communities at non-AOC comparison sites. In 2012 and 2014, the U.S. Geological Survey collected plankton (phytoplankton and zooplankton) community samples at the Sheboygan River AOC and selected non-AOC sites as part of a larger Great Lakes Restoration Initiative study evaluating both the benthos and plankton communities in all four of Wisconsin’s Lake Michigan AOCs. Although neither richness nor diversity of phytoplankton or zooplankton in the Sheboygan River AOC were found to differ significantly from the non-AOC sites in 2012, results from the 2014 data indicated that zooplankton diversity was significantly lower, and so rated as degraded, when compared to the Manitowoc and Kewaunee Rivers, two non-AOC sites of similar size, land use, and close geographic proximity.As a follow-up to the 2014 results, zooplankton samples were collected at the same locations in the AOC and non-AOC sites during three sampling trips in spring, summer, and fall 2016. An analysis of similarity indicated

  17. Late-summer zooplankton community structure, abundance, and distribution in the Hudson Bay system (Canada) and their relationships with environmental conditions, 2003-2006

    NASA Astrophysics Data System (ADS)

    Estrada, Rafael; Harvey, Michel; Gosselin, Michel; Starr, Michel; Galbraith, Peter S.; Straneo, Fiammetta

    2012-08-01

    Zooplankton communities were examined for the first time in three different hydrographic regions of the Hudson Bay system (HBS) in early August to early September from 2003 to 2006. Sampling was conducted at 50 stations distributed along different transects located in Hudson Bay (HB), Hudson Strait (HS), and Foxe Basin (FB). Variations in zooplankton biomass, abundance, taxonomic composition, and diversity in relation to environmental variables were studied using multivariate techniques. During all sampling years, the total zooplankton biomass was on average four times lower in HB than in HS and FB. Clustering samples by their relative species compositions revealed no interannual variation in zooplankton community but showed a marked interregional variability between the three regions. Water column stratification explained the greatest proportion (25%) of this spatial variability. According to redundancy analysis (RDA), the zooplankton taxa that contribute most to the separation of the three regions are Microcalanus spp., Oithona similis, Oncaea borealis, Aeginopsis laurentii, Sagitta elegans, Fritillaria sp., and larvae of cnidaria, chaetognatha, and pteropoda in HB; hyperiid amphipods in FB; and Pseudocalanus spp. CI-CV, Calanus glacialis CI-CVI, Calanus finmarchicus CI-CVI, Calanus hyperboreus CV-CVI, Acartia longiremis CI-CV, Metridia longa N3-N6 CI-CIII CVIf, Eukrohnia hamata, larvae of echinodermata, mollusca, cirripedia, appendicularia, and polychaeta in the northwestern and southeastern HS transects. For the HB transect, the RDA analyzed allowed us to distinguish three regions (HB west, central, and east) with different environmental gradients and zooplankton assemblages, in particular higher concentration of Pseudocalanus spp. nauplii and CI-CVI, as well as benthic macrozooplankton and meroplankton larvae in western HB. In HS, Calanoid species (mainly C. finmarchicus and C. glacialis) were mostly observed at the north shore stations associated with the

  18. Changes in fatty acid and hydrocarbon composition of zooplankton assemblages related to environmental conditions

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lambert, R.M.

    1989-01-01

    Changes in zooplankton fatty acid and hydrocarbon patterns are described in relation to changes in environmental conditions and species composition. The regulation of zooplankton abundance by sea nettle-ctenophore interaction was examined in a small Rhode Island coastal pond. Sea nettles were nettles were able to eliminate ctenophores from the pond and subsequently zooplankton abundance increased. During one increase in zooplankton abundance, it was found that polyunsaturated fatty acids decreased while monounsaturated fatty acids increased. It was concluded that this shift in biochemical pattern was due to food limitation. In addition, zooplankton fatty acids were used in multivariate discriminant analysis tomore » classify whether zooplankton were from coastal or estuarine environments. Zooplankton from coastal environments were characterized by higher monounsaturate fatty acids. Zooplankton hydrocarbon composition was affected by species composition and by pollution inputs. The presence of Calanus finmarchicus was detected by increased levels of pristane.« less

  19. Zooplankton research off Peru: A review

    NASA Astrophysics Data System (ADS)

    Ayón, Patricia; Criales-Hernandez, Maria I.; Schwamborn, Ralf; Hirche, Hans-Jürgen

    2008-10-01

    A review of zooplankton studies conducted in Peruvian marine waters is given. After a short history of the development of zooplankton research off Peru, we review zooplankton methodology, taxonomy, biodiversity, spatial distribution, seasonal and interannual variability, trophodynamics, secondary production, and modelling. We review studies on several micro-, meso-, macro-, and meroplankton groups, and give a species list from both published and unpublished reports. Three regional zooplankton groups have been identified: (1) a continental shelf group dominated by Acartia tonsa and Centropages brachiatus; (2) a continental slope group characterized by siphonophores, bivalves, foraminifera and radiolaria; (3) and a species-rich oceanic group. The highest zooplankton abundances and biomasses were often found between 4-6°S and 14-16°S, where continental shelves are narrow. Species composition changes with distance from the shore. Species composition and biomass also vary strongly on short time scales due to advection, peaks of larval production, trophic interactions, and community succession. The relation of zooplankton to climatic variability (ENSO and multi-decadal) and fish stocks is discussed in the context of ecological regime shifts. An intermediate upwelling hypothesis is proposed, based on the negative effects of low upwelling intensity in summer or extremely strong and enduring winter upwelling on zooplankton abundance off Peru. According to this hypothesis, intermediate upwelling creates an optimal environmental window for zooplankton communities. Finally, we highlight important knowledge gaps that warrant attention in future.

  20. Zooplankton intermittency and turbulence

    NASA Astrophysics Data System (ADS)

    Schmitt, François G.

    2010-05-01

    Planktonic organisms usually live in a turbulent world. Since marine turbulence is characterized by very high Reynolds numbers, it possesses very intermittent fluctuations which in turn affect marine life. We consider here such influence on zooplankton on 2 aspects. First we consider zooplankton motion in the lab. Many copepods display swimming abilities. More and more species have been recently recorded using normal or high speed cameras, and many trajectories have been extracted from these movies and are now available for analysis. These trajectories can be complex, stochastic, with random switching from low velocity to high velocity events and even jumps. These complex trajectories show that an adequate modeling is necessary to understand and characterize them. Here we review the results published in the literature on copepod trajectories. We discuss the random walk, Levy walk modeling and introduce also multifractal random walks. We discuss the way to discriminate between these different walks using experimental data. Stochastic simulations will be performed to illustrate the different families. Second, we consider zooplankton contact rates in the framework of intermittent turbulence. Intermittency may have influence on plankton contact rates. We consider the Particle Stokes number of copepods, in a intermediate dissipation range affected by intermittent fluctuations. We show that they may display preferential concentration effects, and we consider the influence on contact rates of this effect in the intermediate dissipation range.

  1. The Impact of Fish Predation and Cyanobacteria on Zooplankton Size Structure in 96 Subtropical Lakes

    PubMed Central

    Zhang, Jing; Xie, Ping; Tao, Min; Guo, Longgen; Chen, Jun; Li, Li; XueZhen Zhang; Zhang, Lu

    2013-01-01

    Zooplankton are relatively small in size in the subtropical regions. This characteristic has been attributed to intense predation pressure, high nutrient loading and cyanobacterial biomass. To provide further information on the effect of predation and cyanobacteria on zooplankton size structure, we analyzed data from 96 shallow aquaculture lakes along the Yangtze River. Contrary to former studies, both principal components analysis and multiple regression analysis showed that the mean zooplankton size was positively related to fish yield. The studied lakes were grouped into three types, namely, natural fishing lakes with low nutrient loading (Type1), planktivorous fish-dominated lakes (Type 2), and eutrophic lakes with high cyanobacterial biomass (Type 3). A marked difference in zooplankton size structure was found among these groups. The greatest mean zooplankton size was observed in Type 2 lakes, but zooplankton density was the lowest. Zooplankton abundance was highest in Type 3 lakes and increased with increasing cyanobacterial biomass. Zooplankton mean size was negatively correlated with cyanobacterial biomass. No obvious trends were found in Type 1 lakes. These results were reflected by the normalized biomass size spectrum, which showed a unimodal shape with a peak at medium sizes in Type 2 lakes and a peak at small sizes in Type 3 lakes. These results indicated a relative increase in medium-sized and small-sized species in Types 2 and 3 lakes, respectively. Our results suggested that fish predation might have a negative effect on zooplankton abundance but a positive effect on zooplankton size structure. High cyanobacterial biomass most likely caused a decline in the zooplankton size and encouraged the proliferation of small zooplankton. We suggest that both planktivorous fish and cyanobacteria have substantial effects on the shaping of zooplankton community, particularly in the lakes in the eastern plain along the Yangtze River where aquaculture is widespread

  2. The impact of fish predation and cyanobacteria on zooplankton size structure in 96 subtropical lakes.

    PubMed

    Zhang, Jing; Xie, Ping; Tao, Min; Guo, Longgen; Chen, Jun; Li, Li; Xuezhen Zhang; Zhang, Lu

    2013-01-01

    Zooplankton are relatively small in size in the subtropical regions. This characteristic has been attributed to intense predation pressure, high nutrient loading and cyanobacterial biomass. To provide further information on the effect of predation and cyanobacteria on zooplankton size structure, we analyzed data from 96 shallow aquaculture lakes along the Yangtze River. Contrary to former studies, both principal components analysis and multiple regression analysis showed that the mean zooplankton size was positively related to fish yield. The studied lakes were grouped into three types, namely, natural fishing lakes with low nutrient loading (Type1), planktivorous fish-dominated lakes (Type 2), and eutrophic lakes with high cyanobacterial biomass (Type 3). A marked difference in zooplankton size structure was found among these groups. The greatest mean zooplankton size was observed in Type 2 lakes, but zooplankton density was the lowest. Zooplankton abundance was highest in Type 3 lakes and increased with increasing cyanobacterial biomass. Zooplankton mean size was negatively correlated with cyanobacterial biomass. No obvious trends were found in Type 1 lakes. These results were reflected by the normalized biomass size spectrum, which showed a unimodal shape with a peak at medium sizes in Type 2 lakes and a peak at small sizes in Type 3 lakes. These results indicated a relative increase in medium-sized and small-sized species in Types 2 and 3 lakes, respectively. Our results suggested that fish predation might have a negative effect on zooplankton abundance but a positive effect on zooplankton size structure. High cyanobacterial biomass most likely caused a decline in the zooplankton size and encouraged the proliferation of small zooplankton. We suggest that both planktivorous fish and cyanobacteria have substantial effects on the shaping of zooplankton community, particularly in the lakes in the eastern plain along the Yangtze River where aquaculture is widespread

  3. Avoidance of strobe lights by zooplankton

    USGS Publications Warehouse

    Hamel, Martin J.; Richards, Nathan S.; Brown, Michael L.; Chipps, Steven R.

    2010-01-01

    Underwater strobe lights can influence the behavior and distribution of fishes and are increasingly used as a technique to divert fish away from water intake structures on dams. However, few studies examine how strobe lights may affect organisms other than targeted species. To gain insight on strobe lighting effects on nontarget invertebrates, we investigated whether underwater strobe lights influence zooplankton distributions and abundance in Lake Oahe, South Dakota. Zooplankton were collected using vertical tows at 3 discrete distances from an underwater strobe light to quantify the influence of light intensity on zooplankton density. Samples were collected from 3 different depth ranges (0–10 m, 10–20 m and 20–30 m) at <1 m, 15 m and ⩾100 m distance intervals away from the strobe light. Copepods represented 67.2% and Daphnia spp. represented 23.3% of all zooplankton sampled from 17 August to 15 September 2004. Night time zooplankton densities significantly decreased in surface waters when strobe lights were activated. Copepods exhibited the greatest avoidance patterns, while Daphnia avoidance varied throughout sampling depths. These results indicate that zooplankton display negative phototaxic behavior to strobe lights and that researchers must be cognizant of potential effects to the ecosystem such as altering predator–prey interactions or affecting zooplankton distribution and growth.

  4. Annual cycle of zooplankton abundance and species composition in Izmit Bay (the northeastern Marmara Sea)

    NASA Astrophysics Data System (ADS)

    Isinibilir, Melek; Kideys, Ahmet E.; Tarkan, Ahmet N.; Yilmaz, I. Noyan

    2008-07-01

    The monthly abundance, biomass and taxonomic composition of zooplankton of Izmit Bay (the northeastern Marmara Sea) were studied from October 2001 to September 2002. Most species within the zooplankton community displayed a clear pattern of succession throughout the year. Generally copepods and cladocerans were the most abundant groups, while the contribution of meroplankton increased at inner-most stations and dominated the zooplankton. Both species number ( S) and diversity ( H') were positively influenced by the increase in salinity of upper layers ( r = 0.30 and r = 0.31, p < 0.001, respectively), while chlorophyll a was negatively affected ( r = -0.36, p < 0.001). Even though Noctiluca scintillans had a significant seasonality ( F11,120 = 8.45, p < 0.001, ANOVA), abundance was not related to fluctuations in temperature and only chlorophyll a was adversely correlated ( r = -0.35, p < 0.001). In general, there are some minor differences in zooplankton assemblages of upper and lower layers. A comparison of the species composition and abundance of Izmit Bay with other Black Sea bays reveals a high similarity between them.

  5. Indicator Properties of Baltic Zooplankton for Classification of Environmental Status within Marine Strategy Framework Directive.

    PubMed

    Gorokhova, Elena; Lehtiniemi, Maiju; Postel, Lutz; Rubene, Gunta; Amid, Callis; Lesutiene, Jurate; Uusitalo, Laura; Strake, Solvita; Demereckiene, Natalja

    2016-01-01

    The European Marine Strategy Framework Directive requires the EU Member States to estimate the level of anthropogenic impacts on their marine systems using 11 Descriptors. Assessing food web response to altered habitats is addressed by Descriptor 4 and its indicators, which are being developed for regional seas. However, the development of simple foodweb indicators able to assess the health of ecologically diverse, spatially variable and complex interactions is challenging. Zooplankton is a key element in marine foodwebs and thus comprise an important part of overall ecosystem health. Here, we review work on zooplankton indicator development using long-term data sets across the Baltic Sea and report the main findings. A suite of zooplankton community metrics were evaluated as putative ecological indicators that track community state in relation to Good Environmental Status (GES) criteria with regard to eutrophication and fish feeding conditions in the Baltic Sea. On the basis of an operational definition of GES, we propose mean body mass of zooplankton in the community in combination with zooplankton stock measured as either abundance or biomass to be applicable as an integrated indicator that could be used within the Descriptor 4 in the Baltic Sea. These metrics performed best in predicting zooplankton being in-GES when considering all datasets evaluated. However, some other metrics, such as copepod biomass, the contribution of copepods to the total zooplankton biomass or biomass-based Cladocera: Copepoda ratio, were equally reliable or even superior in certain basin-specific assessments. Our evaluation suggests that in several basins of the Baltic Sea, zooplankton communities currently appear to be out-of-GES, being comprised by smaller zooplankters and having lower total abundance or biomass compared to the communities during the reference conditions; however, the changes in the taxonomic structure underlying these trends vary widely across the sea basins due to

  6. High evolutionary potential of marine zooplankton

    PubMed Central

    Peijnenburg, Katja T C A; Goetze, Erica

    2013-01-01

    Abstract Open ocean zooplankton often have been viewed as slowly evolving species that have limited capacity to respond adaptively to changing ocean conditions. Hence, attention has focused on the ecological responses of zooplankton to current global change, including range shifts and changing phenology. Here, we argue that zooplankton also are well poised for evolutionary responses to global change. We present theoretical arguments that suggest plankton species may respond rapidly to selection on mildly beneficial mutations due to exceptionally large population size, and consider the circumstantial evidence that supports our inference that selection may be particularly important for these species. We also review all primary population genetic studies of open ocean zooplankton and show that genetic isolation can be achieved at the scale of gyre systems in open ocean habitats (100s to 1000s of km). Furthermore, population genetic structure often varies across planktonic taxa, and appears to be linked to the particular ecological requirements of the organism. In combination, these characteristics should facilitate adaptive evolution to distinct oceanographic habitats in the plankton. We conclude that marine zooplankton may be capable of rapid evolutionary as well as ecological responses to changing ocean conditions, and discuss the implications of this view. We further suggest two priority areas for future research to test our hypothesis of high evolutionary potential in open ocean zooplankton, which will require (1) assessing how pervasive selection is in driving population divergence and (2) rigorously quantifying the spatial and temporal scales of population differentiation in the open ocean. Recent attention has focused on the ecological responses of open ocean zooplankton to current global change, including range shifts and changing phenology. Here, we argue that marine zooplankton also are well poised for evolutionary responses to global change. PMID:24567838

  7. Stable isotope analysis of 1987-1991 zooplankton samples and bowhead whale tissues. Final report

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Schell, D.M.

    1992-06-01

    Stable isotope analyses of bowhead whale tissue samples and bowhead whale prey organisms collected over the years 1987 to 1991 were used to provide detail on the isotope ratio gradients evident in the arctic Alaskan zooplankton and to verify previous findings regarding the growth rates and age determination techniques developed for bowhead whales. Zooplankton of the Bering and Chukchi seas are enriched in (13)C relative to the eastern Beaufort Sea. The analysis of baleen from bowhead whales taken between 1987 to 1990 indicate that the whales are slow-growing and the young animals between year one and about six to sevenmore » years of age, undergo a period of little or no linear growth. The authors estimate that bowheads require 16-18 years to reach the length of sexual maturity, i.e., 13-14 m. From baleen Delta(13C) cycles, a 20 year record of the isotope ratios in the phytoplankton of the northern Bering and Chukchi seas was constructed. The long-term record has been compared with the temperature anomalies in surface waters of the Bering Sea. The Delta(13C) of the zooplankton is inversely correlated with temperature and refutes current models attempting to relate ocean temperature, and atmospheric carbon dioxide levels with the Delta(13C) of ocean sediment organic matter.« less

  8. Under the Scope: Bringing Zooplankton Research into the K-12 Classroom

    NASA Astrophysics Data System (ADS)

    Cohen, J.; Petrone, C.; Wickline, A.

    2016-02-01

    Despite their small size, zooplankton are dynamic and engaging animals when viewed by researchers, teachers, and students alike. Recognizing this, we are working with K-12 teachers to develop web-based resources for using zooplankton in the classroom. This outreach effort is part of a Delaware Sea Grant-funded research project studying seasonal dynamics of zooplankton in Delaware Bay. The research team, in collaboration with a marine education specialist, initially created a website (www.underthescope.udel.edu) containing: background information on zooplankton and the research project, a magnification tool, an identification tool, and education modules that facilitate directed use of the website content and tools. Local teachers (elementary through high school) were then hosted for a workshop to engage in zooplankton sampling using methods employed in the research project, including zooplankton tows and semi-autonomous identification using a ZooScan imaging system. Teachers then explored the website, evaluating its design, content, and usability for their particular grade level. Specific suggestions from the evaluation were incorporated into the website, with additional implementation planned over the next year. This teacher- researcher partnership was successful in developing the digital resource itself, in building excitement and capacity among a cohort of teachers, and in establishing relationships among teachers and researchers to facilitate adding new dimensions to the collaboration. The latter will include zooplankton sampling by school groups, researcher optical scanning of samples with ZooScan, and subsequent student analysis and reporting on their data.

  9. Factors driving the seasonal distribution of zooplankton in a eutrophicated Mediterranean Lagoon.

    PubMed

    Ziadi, Boutheina; Dhib, Amel; Turki, Souad; Aleya, Lotfi

    2015-08-15

    The distribution of the zooplankton community was studied along with environmental factors at five sampling stations in Ghar El Melh Lagoon (GML) (Mediterranean Sea, northern Tunisia). GML is characterized by specific following properties: broad and shallow, freshwater supply (Station 1); connection to the sea (S2); stagnation (S3 especially), and eutrophic conditions with enhanced nutrient concentrations (S4 and S5). Samples were taken twice monthly from February 2011 to January 2012. Twenty-three zooplankton groups comprising 10 larval stages were identified. Zooplankton assemblages were largely dominated by copepods (37.25%), followed respectively by ciliates (21.09%), bivalve larvae (14.88%) and gastropod veligers (12.53%). Redundancy analysis indicated that while no significant difference was found in the distribution of zooplankton at any station, a strong difference was observed according to season. Both temporal and physicochemical fluctuations explain more than 50% of changes in zooplankton abundances. Copyright © 2015 Elsevier Ltd. All rights reserved.

  10. Zooplankton Distribution and Species Composition Along an Oxygen Gradient in Puget Sound, WA

    NASA Astrophysics Data System (ADS)

    Keister, J. E.; Essington, T.; Li, L.; Horne, J. K.; Sato, M.; Parker-Stetter, S. L.; Moriarty, P.

    2016-02-01

    Low dissolved oxygen (hypoxia) is one of the most pronounced, pervasive, and significant disturbances in marine ecosystems, yet our understanding of its effects is incomplete, particularly with respect to impacts on lower trophic levels. As part of a study of how hypoxia affects predator-prey relationships and energy flow through marine food webs, we are studying relationships between ocean chemistry and zooplankton in Puget Sound, Washington—a deep, seasonally hypoxic fjord in the Pacific Northwest that supports a productive and diverse pelagic community. From summer through fall in two years that differed in the timing and intensity of hypoxia, we conducted multi-frequency bioacoustic surveys, CTD casts, and depth-stratified zooplankton sampling to examine changes in distribution and species composition of animals in relation to oxygen concentrations. We exploited a natural gradient in oxygen along the axis of the fjord by sampling at moderately hypoxic and normoxic sites with otherwise similar hydrography and species composition to disentangle the effects of oxygen from changes in other environmental factors. Our results support the hypothesis that zooplankton species composition and vertical distributions are altered by hypoxia, but only when examined at the species and life-stage level. Relatively few taxa showed clear responses to hypoxia, and bioacoustic backscatter data (which was dominated by adult euphausiids and amphipods) indicated that those taxa were not affected by the levels of hypoxia we observed. Examination of net tow data revealed more subtle changes, including behavioral avoidance of low oxygen by some copepods and young euphausiid life stages. Overall, the high species diversity and relatively low susceptibility of many zooplankton to hypoxia in Puget Sound may confer ecosystem resilience to near-future projected changes in this region.

  11. Acoustic classification of zooplankton

    NASA Astrophysics Data System (ADS)

    Martin Traykovski, Linda V.

    1998-11-01

    Work on the forward problem in zooplankton bioacoustics has resulted in the identification of three categories of acoustic scatterers: elastic-shelled (e.g. pteropods), fluid-like (e.g. euphausiids), and gas-bearing (e.g. siphonophores). The relationship between backscattered energy and animal biomass has been shown to vary by a factor of ~19,000 across these categories, so that to make accurate estimates of zooplankton biomass from acoustic backscatter measurements of the ocean, the acoustic characteristics of the species of interest must be well-understood. This thesis describes the development of both feature based and model based classification techniques to invert broadband acoustic echoes from individual zooplankton for scatterer type, as well as for particular parameters such as animal orientation. The feature based Empirical Orthogonal Function Classifier (EOFC) discriminates scatterer types by identifying characteristic modes of variability in the echo spectra, exploiting only the inherent characteristic structure of the acoustic signatures. The model based Model Parameterisation Classifier (MPC) classifies based on correlation of observed echo spectra with simplified parameterisations of theoretical scattering models for the three classes. The Covariance Mean Variance Classifiers (CMVC) are a set of advanced model based techniques which exploit the full complexity of the theoretical models by searching the entire physical model parameter space without employing simplifying parameterisations. Three different CMVC algorithms were developed: the Integrated Score Classifier (ISC), the Pairwise Score Classifier (PSC) and the Bayesian Probability Classifier (BPC); these classifiers assign observations to a class based on similarities in covariance, mean, and variance, while accounting for model ambiguity and validity. These feature based and model based inversion techniques were successfully applied to several thousand echoes acquired from broadband (~350 k

  12. Potential retention effect at fish farms boosts zooplankton abundance

    NASA Astrophysics Data System (ADS)

    Fernandez-Jover, D.; Toledo-Guedes, K.; Valero-Rodríguez, J. M.; Fernandez-Gonzalez, V.; Sanchez-Jerez, P.

    2016-11-01

    Coastal aquaculture activities influence wild macrofauna in natural environments due to the introduction of artificial structures, such as floating cages, that provide structural complexity in the pelagic system. This alters the abundance and distribution of the affected species and also their feeding behaviour and diet. Despite this, the effects of coastal aquaculture on zooplankton assemblages and the potential changes in their abundance and distribution remain largely unstudied. Traditional plankton sampling hauls between the farm mooring systems entail some practical difficulties. As an alternative, light traps were deployed at 2 farms in the SW Mediterranean during a whole warm season. Total zooplankton capture by traps at farms was higher than at control locations on every sampling night. It ranged from 3 to 10 times higher for the taxonomic groups: bivalvia, cladocera, cumacea, fish early-life-stages, gastropoda, polychaeta and tanaidacea; 10-20 times higher for amphipoda, chaetognatha, isopoda, mysidacea and ostracoda, and 22 times higher for copepoda and the crustacean juvenile stages zoea and megalopa. Permutational analysis showed significant differences for the most abundant zooplankton groups (copepoda, crustacean larvae, chaetognatha, cladocera, mysidacea and polychaeta). This marked incremental increase in zooplankton taxa at farms was consistent, irrespective of the changing environmental variables registered every night. Reasons for the greater abundance of zooplankton at farms are discussed, although results suggest a retention effect caused by cage structures rather than active attraction through physical or chemical cues.

  13. Effects of pond management on biodiversity patterns and community structure of zooplankton in urban environments.

    PubMed

    Suski, Jamie G; Swan, Christopher M; Salice, Christopher J; Wahl, Charles F

    2018-04-01

    As urban areas continue expanding, major cities become connected forming megacities. Urban encroachment into natural areas transforms the landscape into a built environment with heterogeneously distributed patches of novel habitat. Community structure within novel habitats is influenced by anthropogenic factors including fragmentation and species interactions. Alterations in complex biodiversity patterns may be used to assess how urban stressors impact community assemblages which, ultimately, may inform sustainable management decisions. To manage algal blooms, Aquashade® is applied directly to ponds. We investigated the effects of Aquashade®, nutrient loading and dispersal on local species diversity and compositional turnover of zooplankton communities from suburban ponds in Columbia, MD, USA using a mesocosm approach. We found that Aquashade® acted as an environmental filter by increasing local species diversity and decreasing compositional turnover. This ultimately could have an overall homogenizing effect on the regional species pool (or γ-diversity). The same pattern was observed in mesocosms that received simulated dispersal events of zooplankton. Nutrients, overall, increased autotrophic biomass and while Aquashade® had no effect on autotrophic biomass, the interaction of nutrients and Aquashade® similarly caused a homogenization of the zooplankton community. Additionally, there was an overall increase in cladoceran ephippia in mesocosms receiving Aquashade® compared to those not, suggesting there is a 'trigger' switching cladocerans from parthenogenic to sexual reproduction. Taken together, our results show the application of Aquashade®, nutrient loading and dispersal shift biodiversity patterns in urban zooplankton communities. We hypothesize these shifts originate at the resource level through alterations in the phytoplankton community either through composition or nutritive value in ponds receiving Aquashade®. Our study illustrates the importance

  14. On uses, misuses and potential abuses of fractal analysis in zooplankton behavioral studies: A review, a critique and a few recommendations

    NASA Astrophysics Data System (ADS)

    Seuront, Laurent

    2015-08-01

    Fractal analysis is increasingly used to describe, and provide further understanding to, zooplankton swimming behavior. This may be related to the fact that fractal analysis and the related fractal dimension D have the desirable properties to be independent of measurement scale and to be very sensitive to even subtle behavioral changes that may be undetectable to other behavioral variables. As early claimed by Coughlin et al. (1992), this creates "the need for fractal analysis" in behavioral studies, which has hence the potential to become a valuable tool in zooplankton behavioral ecology. However, this paper stresses that fractal analysis, as well as the more elaborated multifractal analysis, is also a risky business that may lead to irrelevant results, without paying extreme attention to a series of both conceptual and practical steps that are all likely to bias the results of any analysis. These biases are reviewed and exemplified on the basis of the published literature, and remedial procedures are provided not only for geometric and stochastic fractal analyses, but also for the more complicated multifractal analysis. The concept of multifractals is finally introduced as a direct, objective and quantitative tool to identify models of motion behavior, such as Brownian motion, fractional Brownian motion, ballistic motion, Lévy flight/walk and multifractal random walk. I finally briefly review the state of this emerging field in zooplankton behavioral research.

  15. Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater zooplankton.

    PubMed

    Elías-Gutiérrez, Manuel; Valdez-Moreno, Martha; Topan, Janet; Young, Monica R; Cohuo-Colli, José Angel

    2018-03-01

    Currently, freshwater zooplankton sampling and identification methodologies have remained virtually unchanged since they were first established in the beginning of the XX century. One major contributing factor to this slow progress is the limited success of modern genetic methodologies, such as DNA barcoding, in several of the main groups. This study demonstrates improved protocols which enable the rapid assessment of most animal taxa inhabiting any freshwater system by combining the use of light traps, careful fixation at low temperatures using ethanol, and zooplankton-specific primers. We DNA-barcoded 2,136 specimens from a diverse array of taxonomic assemblages (rotifers, mollusks, mites, crustaceans, insects, and fishes) from several Canadian and Mexican lakes with an average sequence success rate of 85.3%. In total, 325 Barcode Index Numbers (BINs) were detected with only three BINs (two cladocerans and one copepod) shared between Canada and Mexico, suggesting a much narrower distribution range of freshwater zooplankton than previously thought. This study is the first to broadly explore the metazoan biodiversity of freshwater systems with DNA barcodes to construct a reference library that represents the first step for future programs which aim to monitor ecosystem health, track invasive species, or improve knowledge of the ecology and distribution of freshwater zooplankton.

  16. Analysis of southeast Australian zooplankton observations of 1938-42 using synoptic oceanographic conditions

    NASA Astrophysics Data System (ADS)

    Baird, Mark E.; Everett, Jason D.; Suthers, Iain M.

    2011-03-01

    The research vessel Warreen obtained 1742 planktonic samples along the continental shelf and slope of southeast Australia from 1938-42, representing the earliest spatially and temporally resolved zooplankton data from Australian marine waters. In this paper, Warreen observations along the southeast Australian seaboard from 28°S to 38°S are interpreted based on synoptic meteorological and oceanographic conditions and ocean climatologies. Meteorological conditions are based on the NOAA-CIRES 20th Century Reanalysis Project; oceanographic conditions use Warreen hydrological observations, and the ocean climatology is the CSIRO Atlas of Regional Seas. The Warreen observations were undertaken in waters on average 0.45 °C cooler than the climatological average, and included the longest duration El Niño of the 20th century. In northern New South Wales (NSW), week time-scale events dominate zooplankton response. In August 1940 an unusual winter upwelling event occurred in northern NSW driven by a stronger than average East Australian Current (EAC) and anomalous northerly winds that resulted in high salp and larvacean abundance. In January 1941 a strong upwelling event between 28° and 33°S resulted in a filament of upwelled water being advected south and alongshore, which was low in zooplankton biovolume. In southern NSW a seasonal cycle in physical and planktonic characteristics is observed. In January 1941 the poleward extension of the EAC was strong, advecting more tropical tunicate species southward. Zooplankton abundance and distribution on the continental shelf and slope are more dependent on weekly to monthly timescales on local oceanographic and meteorological conditions than continental-scale interannual trends. The interpretation of historical zooplankton observations of the waters off southeast Australia for the purpose of quantifying anthropogenic impacts will be improved with the use of regional hindcasts of synoptic ocean and atmospheric weather that can

  17. You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey

    PubMed Central

    Roura, Álvaro; Doyle, Stephen R.; Nande, Manuel; Strugnell, Jan M.

    2017-01-01

    The common octopus (Octopus vulgaris) is an attractive species for aquaculture, however, several challenges inhibit sustainable commercial production. Little is known about the early paralarval stages in the wild, including diet and intestinal microbiota, which likely play a significant role in development and vitality of this important life stage. High throughput sequencing was used to characterize the gastrointestinal microbiome of wild O. vulgaris paralarvae collected from two different upwelling regions off the coast of North West Spain (n = 41) and Morocco (n = 35). These were compared to that of paralarvae reared with Artemia for up to 25 days in captivity (n = 29). In addition, the gastrointestinal microbiome of zooplankton prey (crabs, copepod and krill) was also analyzed to determine if the microbial communities present in wild paralarvae are derived from their diet. Paralarvae reared in captivity with Artemia showed a depletion of bacterial diversity, particularly after day 5, when almost half the bacterial species present on day 0 were lost and two bacterial families (Mycoplasmataceae and Vibrionaceae) dominated the microbial community. In contrast, bacterial diversity increased in wild paralarvae as they developed in the oceanic realm of both upwelling systems, likely due to the exposure of new bacterial communities via ingestion of a wide diversity of prey. Remarkably, the bacterial diversity of recently hatched paralarvae in captivity was similar to that of wild paralarvae and zooplankton, thus suggesting a marked effect of the diet in both the microbial community species diversity and evenness. This study provides a comprehensive overview of the bacterial communities inhabiting the gastrointestinal tract of O. vulgaris paralarvae, and reveals new research lines to challenge the current bottlenecks preventing sustainable octopus aquaculture. PMID:28620315

  18. You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey.

    PubMed

    Roura, Álvaro; Doyle, Stephen R; Nande, Manuel; Strugnell, Jan M

    2017-01-01

    The common octopus ( Octopus vulgaris ) is an attractive species for aquaculture, however, several challenges inhibit sustainable commercial production. Little is known about the early paralarval stages in the wild, including diet and intestinal microbiota, which likely play a significant role in development and vitality of this important life stage. High throughput sequencing was used to characterize the gastrointestinal microbiome of wild O. vulgaris paralarvae collected from two different upwelling regions off the coast of North West Spain ( n = 41) and Morocco ( n = 35). These were compared to that of paralarvae reared with Artemia for up to 25 days in captivity ( n = 29). In addition, the gastrointestinal microbiome of zooplankton prey (crabs, copepod and krill) was also analyzed to determine if the microbial communities present in wild paralarvae are derived from their diet. Paralarvae reared in captivity with Artemia showed a depletion of bacterial diversity, particularly after day 5, when almost half the bacterial species present on day 0 were lost and two bacterial families (Mycoplasmataceae and Vibrionaceae) dominated the microbial community. In contrast, bacterial diversity increased in wild paralarvae as they developed in the oceanic realm of both upwelling systems, likely due to the exposure of new bacterial communities via ingestion of a wide diversity of prey. Remarkably, the bacterial diversity of recently hatched paralarvae in captivity was similar to that of wild paralarvae and zooplankton, thus suggesting a marked effect of the diet in both the microbial community species diversity and evenness. This study provides a comprehensive overview of the bacterial communities inhabiting the gastrointestinal tract of O. vulgaris paralarvae, and reveals new research lines to challenge the current bottlenecks preventing sustainable octopus aquaculture.

  19. Zooplankton in the Arctic outflow

    NASA Astrophysics Data System (ADS)

    Soloviev, K. A.; Dritz, A. V.; Nikishina, A. B.

    2009-04-01

    Climate changes in the Arctic cause the changes in the current system that may have cascading effect on the structure of plankton community and consequently on the interlinked and delicately balanced food web. Zooplankton species are by definition incapable to perform horizontal moving. Their transport is connected with flowing water. There are zooplankton species specific for the definite water masses and they can be used as markers for the different currents. That allows us to consider zooplankton community composition as a result of water mixing in the studied area. Little is known however about the mechanisms by which spatial and temporal variability in advection affect dynamics of local populations. Ice conditions are also very important in the function of pelagic communities. Melting time is the trigger to all "plankton blooming" processes, and the duration of ice-free conditions determines the food web development in the future. Fram Strait is one of the key regions for the Arctic: the cold water outflow comes through it with the East Greenland Current and meets warm Atlantic water, the West Spitsbergen Current, producing complicated hydrological situation. During 2007 and 2008 we investigated the structure functional characteristics of zooplankton community in the Fram Strait region onboard KV "Svalbard" (April 2007, April and May 2008) and RV "Jan Mayen" (May 2007, August 2008). This study was conducted in frame of iAOOS Norway project "Closing the loop", which, in turn, was a part of IPY. During this cruises multidisciplinary investigations were performed, including sea-ice observations, CTD and ADCP profiling, carbon flux, nutrients and primary production measurements, phytoplankton sampling. Zooplankton was collected with the Hydro-Bios WP2 net and MultiNet Zooplankton Sampler, (mouth area 0.25 m2, mesh size 180 um).Samples were taken from the depth strata of 2000-1500, 1500-1000, 1000-500,500-200, 200-100, 100-60, 60-30, 30-0 m. Gut fluorescence

  20. Possible association of diazotrophs with marine zooplankton in the Pacific Ocean.

    PubMed

    Azimuddin, Kazi Md; Hirai, Junya; Suzuki, Shotaro; Haider, Md Nurul; Tachibana, Aiko; Watanabe, Keigo; Kitamura, Minoru; Hashihama, Fuminori; Takahashi, Kazutaka; Hamasaki, Koji

    2016-12-01

    Dinitrogen fixation, the biological reduction in N 2 gas to ammonia contributes to the supply of new nitrogen in the surface ocean. To understand the diversity and abundance of potentially diazotrophic (N 2 fixing) microorganisms associated with marine zooplankton, especially copepods, the nifH gene was studied using zooplankton samples collected in the Pacific Ocean. In total, 257 nifH sequences were recovered from 23 nifH-positive DNA extracts out of 90 copepod samples. The nifH genes derived from cyanobacteria related to Trichodesmium, α- and γ-subdivisions of proteobacteria, and anaerobic euryarchaeota related to Methanosaeta concilii were detected. Our results indicated that Pleuromamma, Pontella, and Euchaeta were the major copepod genera hosting dinitrogen fixers, though we found no species-specific association between copepods and dinitrogen fixers. Also, the digital PCR provided novel data on the number of copies of the nifH gene in individual copepods, which we report the range from 30 to 1666 copies per copepod. This study is the first systematic study of zooplankton-associated diazotrophs, covering a large area of the open ocean, which provide a clue to further study of a possible new hotspot of N 2 fixation. © 2016 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

  1. Overheated and Out of Breath: Temperature Regulation of Respiration and Oxygen Supply in Coastal Zooplankton

    NASA Astrophysics Data System (ADS)

    Roman, M.; Elliott, D. T.; Pierson, J. J.

    2016-02-01

    Increasing global coastal hypoxia occurs under a large range of temperature and salinity conditions. Temperature directly influences oxygen solubility in seawater as well as the oxygen demand of zooplankton, thus oxygen concentration alone is not sufficient to categorize the biological impact of hypoxia for pelagic organisms. To effectively assess the impacts of hypoxic stress on zooplankton habitat space and production, it is necessary to consider the effects of temperature on both oxygen availability and zooplankton metabolism. Our analysis and modeling evaluate available oxygen (partial pressure and concentration) in the context of ambient temperature conditions and zooplankton oxygen demand. We will present allometric models, accounting for both body size and temperature that predict temperature-dependent oxygen supply and demand in coastal zooplankton. Our goal is to develop generalized, functional relationships that describe and quantify the interactive effects of temperature and low oxygen on coastal zooplankton that can lead to improved size-structured models that serve to predict impacts of increasing coastal hypoxia on pelagic food webs.

  2. Zooplankton community structure during a transition from dry to wet state in a shallow, subtropical estuarine lake

    NASA Astrophysics Data System (ADS)

    Carrasco, Nicola K.; Perissinotto, Renzo

    2015-12-01

    Lake St Lucia is among the most important shallow ecosystems globally and Africa's largest estuarine lake. It has long been regarded as a resilient system, oscillating through periods of hypersalinity and freshwater conditions, depending on the prevailing climate. The alteration of the system's catchment involving the diversion of the Mfolozi River away from Lake St Lucia, however, challenged the resilience of the system, particularly during the most recent drought (2002-2011), sacrificing much of its biodiversity. This study reports on the transition of the St Lucia zooplankton community from a dry hypersaline state to a new wet phase. Sampling was undertaken during routine quarterly surveys at five representative stations along the lake system from February 2011 to November 2013. A total of 54 taxa were recorded during the study period. The zooplankton community was numerically dominated by the calanoid copepods Acartiella natalensis and Pseudodiaptomus stuhlmanni and the cyclopoid copepod Oithona brevicornis. While the mysid Mesopodopsis africana was still present in the system during the wet phase, it was not found in the swarming densities that were recorded during the previous dry phase, possibly due to increased predation pressure, competition with other taxa and or the reconnection with the Mfolozi River via a beach spillway. The increase in zooplankton species richness recorded during the present study shows that the system has undergone a transition to wet state, with the zooplankton community structure reflecting that recorded during the past. It is likely, though, that only a full restoration of natural mouth functioning will result in further diversity increases.

  3. Zooplankton interactions with toxic phytoplankton: Some implications for food web studies and algal defence strategies of feeding selectivity behaviour, toxin dilution and phytoplankton population diversity

    NASA Astrophysics Data System (ADS)

    Barreiro, A.; Guisande, C.; Maneiro, I.; Vergara, A. R.; Riveiro, I.; Iglesias, P.

    2007-11-01

    This study focuses on the interactions between toxic phytoplankton and zooplankton grazers. The experimental conditions used are an attempt to simulate situations that have, so far, received little attention. We presume the phytoplankton community to be a set of species where a population of a toxic species is intrinsically diverse by the presence of coexisting strains with different toxic properties. The other species in the community may not always be high-quality food for herbivorous zooplankton. Zooplankton populations may have developed adaptive responses to sympatric toxic phytoplankton species. Zooplankton grazers may perform a specific feeding behaviour and its consequences on fitness will depend on the species ingested, the effect of toxins, and the presence of mechanisms of toxin dilution and compensatory feeding. Our target species are a strain of the dinoflagellate Alexandrium minutum and a sympatric population of the copepod Acartia clausi. Mixed diets were used with two kinds of A. minutum cells: non-toxic and toxic. The flagellate Rhodomonas baltica and the non-toxic dinoflagellate Alexandrium tamarense were added as accompanying species. The effect of each alga was studied in separate diets. The toxic A. minutum cells were shown to have negative effects on egg production, hatching success and total reproductive output, while, in terms of its effect on fitness, the non-toxic A. minutum was the best quality food offered. R. baltica and A. tamarense were in intermediate positions. In the mixed diets, copepods showed a strong preference for toxic A. minutum cells and a weaker one for A. tamarense cells, while non-toxic A. minutum was slightly negatively selected and R. baltica strongly negatively selected. Although the level of toxins accumulated by copepods was very similar, in both the diet with only toxic A. minutum cells and in the mixed diet, the negative effects on fitness in the mixed diet could be offset by toxin dilution mechanisms. The

  4. First results on zooplankton community composition and contamination by some persistent organic pollutants in the Gulf of Tadjoura (Djibouti).

    PubMed

    Boldrocchi, G; Moussa Omar, Y; Rowat, D; Bettinetti, R

    2018-06-15

    The Gulf of Tadjoura is located in the Horn of Africa and is widely recognized as an important site where the zooplanktivorous whale sharks seasonally aggregate from October to February. The surface zooplankton community (0-3m) was weekly sampled from November 2016 to February 2017 in two sites during the whale shark aggregation period. A total of 12 phyla were identified. Copepoda represented the most abundant and diverse group with 29 different genera, and contributed with an average of 82% of the mean zooplankton density of approximately 6600indm -3 . During the sampling period, copepods were dominated numerically by Calanoida (3600indm -3 ), followed by Poicilostomatatoida (1300indm -3 ). Within the copepods, Paracalanidae, Calanidae, Oncaeidae and Miraciidae were the most common families. The temporal trend in zooplankton biomass at both stations revealed the highest peak in December (41.3±36.4mgm -3 ), and the lowest in February (6.6±3.3mgm -3 ). As no information is available on the occurrence of legacy contaminants use and release in this area, analysis revealed the consistent presence of both DDT and PCB residues in zooplankton samples in the Gulf of Tadjoura. Total PCB ranged from approximately 110 to 637ngg -1 d.w., while total DDT from 21 to 80ngg -1 d.w. The proportion of primary DDT in the total residue was higher than DDE and DDD, which strongly suggests that the area might actually be subjected to DDT inputs of the parent compound. Copyright © 2018 Elsevier B.V. All rights reserved.

  5. Strategies of zooplanktivory shape the dynamics and diversity of littoral plankton communities: a mesocosm approach

    PubMed Central

    Helenius, Laura K; Aymà Padrós, Anna; Leskinen, Elina; Lehtonen, Hannu; Nurminen, Leena

    2015-01-01

    Planktivorous fish can exert strong top-down control on zooplankton communities. By incorporating different feeding strategies, from selective particulate feeding to cruising filter feeding, fish species target distinct prey. In this study, we investigated the effects of two species with different feeding strategies, the three-spined stickleback (Gasterosteus aculeatus (L.)) and roach (Rutilus rutilus (L.)), on a low-diversity brackish water zooplankton community using a 16-day mesocosm experiment. The experiment was conducted on a small-bodied spring zooplankton community in high-nutrient conditions, as well as a large-bodied summer community in low-nutrient conditions. Effects were highly dependent on the initial zooplankton community structure and hence seasonal variation. In a small-bodied community with high predation pressure and no dispersal or migration, the selective particulate-feeding stickleback depleted the zooplankton community and decreased its diversity more radically than the cruising filter-feeding roach. Cladocerans rather than copepods were efficiently removed by predation, and their removal caused altered patterns in rotifer abundance. In a large-bodied summer community with initial high taxonomic and functional diversity, predation pressure was lower and resource availability was high for omnivorous crustaceans preying on other zooplankton. In this community, predation maintained diversity, regardless of predator species. During both experimental periods, predation influenced the competitive relationship between the dominant calanoid copepods, and altered species composition and size structure of the zooplankton community. Changes also occurred to an extent at the level of nontarget prey, such as microzooplankton and rotifers, emphasizing the importance of subtle predation effects. We discuss our results in the context of the adaptive foraging mechanism and relate them to the natural littoral community. PMID:26045953

  6. Acoustic Scattering Models of Zooplankton and Microstructure

    DTIC Science & Technology

    1997-09-30

    shelled (gastropods), and gas-bearing ( siphonophores )). 5) LABORATORY EXPERIMENTATION: ZOOPLANKTON. An extensive set of laboratory measurements on the...zooplankton ( siphonophores and pteropods) that have high enough target strengths and occur in sufficiently high numbers that they could interfere with

  7. Ecology of selected marine communities in Glacier Bay: Zooplankton, forage fish, seabirds and marine mammals

    USGS Publications Warehouse

    Robards, Martin D.; Drew, Gary S.; Piatt, John F.; Anson, Jennifer Marie; Abookire, Alisa A.; Bodkin, James L.; Hooge, Philip N.; Speckman, Suzann G.

    2003-01-01

    We studied oceanography (including primary production), secondary production, small schooling fish (SSF), and marine bird and mammal predators in Glacier Bay during 1999 and 2000. Results from these field efforts were combined with a review of current literature relating to the Glacier Bay environment. Since the conceptual model developed by Hale and Wright (1979) ‘changes and cycles’ continue to be the underlying theme of the Glacier Bay ecosystem. We found marked seasonality in many of the parameters that we investigated over the two years of research, and here we provide a comprehensive description of the distribution and relative abundance of a wide array of marine biota. Glacier Bay is a tidally mixed estuary that leads into basins, which stratify in summer, with the upper arms behaving as traditional estuaries. The Bay is characterized by renewal and mixing events throughout the year, and markedly higher primary production than in many neighboring southeast Alaska fjords (Hooge and Hooge, 2002). Zooplankton diversity and abundance within the upper 50 meters of the water column in Glacier Bay is similar to communities seen throughout the Gulf of Alaska. Zooplankton in the lower regions of Glacier Bay peak in abundance in late May or early June, as observed at Auke Bay and in the Gulf of Alaska. The key distinction between the lower Bay and other estuaries in the Gulf of Alaska is that a second smaller peak in densities occurs in August. The upper Bay behaved uniformly in temporal trends, peaking in July. Densities had begun to decline in August, but were still more than twice those observed in that region in May. The highest density of zooplankton observed was 17,870 organisms/m3 in Tarr Inlet during July. Trends in zooplankton community abundance and diversity within the lower Bay were distinct from upper-Glacier Bay trends. Whereas the lower Bay is strongly influenced by Gulf of Alaska processes, local processes are the strongest influence in the upper

  8. Microscale nutrient patches produced by zooplankton

    PubMed Central

    Lehman, John T.; Scavia, Donald

    1982-01-01

    Both track autoradiography and grain-density autoradiography show that individual zooplankton create miniature patches of dissolved nutrients and that algae exploit those regions to absorb phosphate. The patches are short lived and can be dispersed artificially by small-scale turbulence. Our data support a simple model of encounters between algae and nutrient plumes produced by swimming zooplankton. PMID:16593218

  9. SEAPODYM-LTL: a parsimonious zooplankton dynamic biomass model

    NASA Astrophysics Data System (ADS)

    Conchon, Anna; Lehodey, Patrick; Gehlen, Marion; Titaud, Olivier; Senina, Inna; Séférian, Roland

    2017-04-01

    Mesozooplankton organisms are of critical importance for the understanding of early life history of most fish stocks, as well as the nutrient cycles in the ocean. Ongoing climate change and the need for improved approaches to the management of living marine resources has driven recent advances in zooplankton modelling. The classical modeling approach tends to describe the whole biogeochemical and plankton cycle with increasing complexity. We propose here a different and parsimonious zooplankton dynamic biomass model (SEAPODYM-LTL) that is cost efficient and can be advantageously coupled with primary production estimated either from satellite derived ocean color data or biogeochemical models. In addition, the adjoint code of the model is developed allowing a robust optimization approach for estimating the few parameters of the model. In this study, we run the first optimization experiments using a global database of climatological zooplankton biomass data and we make a comparative analysis to assess the importance of resolution and primary production inputs on model fit to observations. We also compare SEAPODYM-LTL outputs to those produced by a more complex biogeochemical model (PISCES) but sharing the same physical forcings.

  10. Diel distribution of zooplankton at the Mobil OTEC site (29/sup 0/N 88/sup 0/W) in the Northern Gulf of Mexico

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Steen, Jr, J P; Gunter, G; Hartwig, E O

    1982-01-01

    In the study 128 copepod species and 43 other zooplankton taxa were identified from four depth strata (0 to 50 m, 50 to 100 m, 100 to 300 m and 300 to 500 m). Duplicate step-oblique tows at six hour intervals over 24 hours were taken at a site in the Gulf of Mexico. The distribution of zooplankton numbers and sizes, and species diversity, richness and evenness through a diel period are described.

  11. Acoustic discrimination of Southern Ocean zooplankton

    NASA Astrophysics Data System (ADS)

    Brierley, Andrew S.; Ward, Peter; Watkins, Jonathan L.; Goss, Catherine

    Acoustic surveys in the vicinity of the sub-Antarctic island of South Georgia during a period of exceptionally calm weather revealed the existence of a number of horizontally extensive yet vertically discrete scattering layers in the upper 250 m of the water column. These layers were fished with a Longhurst-Hardy plankton recorder (LHPR) and a multiple-opening 8 m 2 rectangular mid-water trawl (RMT8). Analysis of catches suggested that each scattering layer was composed predominantly of a single species (biovolume>95%) of either the euphausiids Euphausia frigida or Thysanöessa macrura, the hyperiid amphipod Themisto gaudichaudii, or the eucalaniid copepod Rhincalanus gigas. Instrumentation on the nets allowed their trajectories to be reconstructed precisely, and thus catch data to be related directly to the corresponding acoustic signals. Discriminant function analysis of differences between mean volume backscattering strength at 38, 120 and 200 kHz separated echoes originating from each of the dominant scattering layers, and other signals identified as originating from Antarctic krill ( Euphausia superba), with an overall correct classification rate of 77%. Using echo intensity data alone, gathered using hardware commonly employed for fishery acoustics, it is therefore possible to discriminate in situ between several zooplanktonic taxa, taxa which in some instances exhibit similar gross morphological characteristics and have overlapping length- frequency distributions. Acoustic signals from the mysid Antarctomysis maxima could also be discriminated once information on target distribution was considered, highlighting the value of incorporating multiple descriptors of echo characteristics into signal identification procedures. The ability to discriminate acoustically between zooplankton taxa could be applied to provide improved acoustic estimates of species abundance, and to enhance field studies of zooplankton ecology, distribution and species interactions.

  12. Metabarcoding Baseline for the Sargasso Sea Zooplankton Community

    NASA Astrophysics Data System (ADS)

    Blanco-Bercial, L.; Alam, S.

    2016-02-01

    Understanding the responses and evolution of any community over space and time requires a deep knowledge of the species present at each location and their interactions. Where taxonomy turns out to be challenging, as it is in the case of zooplankton, supra-species grouping is a common resort in community characterization. Although this makes morphological identification manageable, there is the associated price of a limited depth of study and the risk of mixing different species' organismal responses. As global change begins to influence species distributions and physiologies, it becomes ever more important to discriminate at a species specific level. The development of DNA-based identification protocols during the last decades are rapidly driving these limitations away, increasing our understanding of the existing complexity of even very close taxa to different stressors or environmental conditions. Beyond the mere taxonomic discrimination of the analyzed community, the use of DNA sequences allows for the rapid integration of phylogenetic measurements and related indexes. In this presentation, we show our first results tackling one of the regions with the highest zooplankton diversity, the Subtropical North Atlantic at the Bermuda Atlantic Time-Series Study (BATS) site. The chosen metabarcoding region was the hypervariable V9 region of the 18S rRNA gene. In this first investigation, we establish the baseline information needed for further and more comprehensive analyses on the time series: minimum coverage depth per sample, taxonomic and phylogenetic diversity of the community and effect of the Diel Vertical Migration in the epipelagic community. We also analyze the limitations of the species identification in relation to the variability of the V9 region within and between species.

  13. Acoustic Scattering Models of Zooplankton and Microstructures

    DTIC Science & Technology

    1998-09-30

    scattering by the seafloor. SCATTERING BY GAS-BEARING ZOOPLANKTON. In earlier work we showed that the scattering by gas-bearing zooplankton ( siphonophores ... siphonophores and pteropods) that have high enough target strengths and occur in sufficiently high numbers that they could interfere with the performance of

  14. Emergent Macrophytes Support Zooplankton in a Shallow Tropical Lake: A Basis for Wetland Conservation

    NASA Astrophysics Data System (ADS)

    Gebrehiwot, Mesfin; Kifle, Demeke; Triest, Ludwig

    2017-12-01

    Understanding the biodiversity value of littoral zones of lakes is a priority for aquatic biodiversity conservation. However, less emphasis has been given to the littoral part of tropical African lakes, with many of the previous researches focusing only on the open water side. The aim of the present study was, therefore, to investigate the impact of the littoral zone of a shallow freshwater tropical lake (Ziway, Ethiopia), dominated by two emergent macrophytes, on zooplankton community structure. We hypothesized that the wetland vegetation serves as a preferred microhabitat for zooplankton communities. A lake with substantial coverage of emergent macrophytes was monitored monthly from January to August, 2016. The monitoring included the measurements of physical, chemical, and biological parameters. Sampling sites were selected to represent areas of the macrophyte vegetation ( Typha latifolia and Phragmites australis) and the open water part of the lake. Sites with macrophyte vegetation were found to be the home of more dense and diverse zooplankton community. However, during the period of high vegetation loss, the density of crustacean zooplankton showed significant reduction within the patches of macrophytes. From biodiversity conservation perspective, it was concluded that the preservation of such small areas of macrophytes covering the littoral zone of lakes could be as important as protecting the whole lake. However, the rapid degradation of wetland vegetation by human activities is a real threat to the lake ecosystem. In the not-too-far future, it could displace and evict riparian vegetation and the biota it supports.

  15. Stable Isotope and Signature Fatty Acid Analyses Suggest Reef Manta Rays Feed on Demersal Zooplankton

    PubMed Central

    Couturier, Lydie I. E.; Rohner, Christoph A.; Richardson, Anthony J.; Marshall, Andrea D.; Jaine, Fabrice R. A.; Bennett, Michael B.; Townsend, Kathy A.; Weeks, Scarla J.; Nichols, Peter D.

    2013-01-01

    Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different zooplankton functional groups (i.e. near-surface zooplankton collected during manta ray feeding events and non-feeding periods, epipelagic zooplankton, demersal zooplankton and several different zooplankton taxa). Stable isotope δ15N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic zooplankton. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ13C values in reef manta ray tissue suggest that they do not feed solely on pelagic zooplankton, but rather obtain part of their diet from another origin. The closest match was with demersal zooplankton, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal zooplankton is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs. PMID:24167562

  16. Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization.

    PubMed

    Pintar, Matthew R; Resetarits, William J

    2017-08-01

    Trophic interactions are critical determinants of community structure and ecosystem function. In freshwater habitats, top predators are traditionally viewed as drivers of ecosystem structure, shaping populations of consumers and primary producers. The temporary nature of small water bodies makes them dependent on colonization by many organisms, particularly insects that form highly diverse predator assemblages. We conducted mesocosm experiments with naturally colonizing populations of aquatic beetles to assess how prey (zooplankton) abundances influenced colonization and assemblages of natural populations of aquatic beetles. We experimentally demonstrate that zooplankton populations can be proximate regulators of predator populations and assemblages via prey-density-dependent predator recruitment. Our results provide support for the importance of prey populations in structuring predator populations and the role of habitat selection in structuring communities. We indicate that traditional views of predators as drivers of ecosystem structure in many systems may not provide a comprehensive picture, particularly in the context of highly disturbed or ephemeral habitats. © 2017 by the Ecological Society of America.

  17. Detecting Habitats and Ecosystem Functions Considering the Mesozooplankton Size and Diversity Structures and Environmental Conditions in the Gulf of Lion, NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Carlotti, F.; Espinasse, B.; Zhou, M.; Jean-Luc, D.

    2016-02-01

    Environmental conditions and zooplankton size structure and taxonomic diversity were investigated in the Gulf of Lion in May 2010 and January 2011. The integrated physical and biological measurements provided a 3D view with high spatial resolution of the physical and biological variables and their correlations over the whole gulf. The effects of physical processes such as freshwater input, coastal upwelling, and water column mixing by winds on phytoplankton and zooplankton distributions were analyzed using these data. Several analytic tests were performed in order to define several ecoregions representing different habitats of plankton communities. Three habitats were distinguished based on statistical analysis performed on biological and physical variables: (1) the coastal area characterized by shallow waters, high chl a concentrations, and a steep slope of the normalized biomass size spectrum (NBSS); (2) the area affected by the Rhône with high stratification and flat NBSS slope; and (3) the continental shelf with a deep mixed layer, relatively low particle concentrations, and moderate NBSS slope. The zooplankton diversity was characterized by spatial differences in community composition among the Rhône plume area, the coastal shelf, and shelf break waters. Defining habitat is a relevant approach to designing new zooplankton sampling strategies, validating distribution models and including the zooplankton compartment in trophodynamic studies.

  18. Terrestrial carbohydrates support freshwater zooplankton during phytoplankton deficiency.

    PubMed

    Taipale, Sami J; Galloway, Aaron W E; Aalto, Sanni L; Kahilainen, Kimmo K; Strandberg, Ursula; Kankaala, Paula

    2016-08-11

    Freshwater food webs can be partly supported by terrestrial primary production, often deriving from plant litter of surrounding catchment vegetation. Although consisting mainly of poorly bioavailable lignin, with low protein and lipid content, the carbohydrates from fallen tree leaves and shoreline vegetation may be utilized by aquatic consumers. Here we show that during phytoplankton deficiency, zooplankton (Daphnia magna) can benefit from terrestrial particulate organic matter by using terrestrial-origin carbohydrates for energy and sparing essential fatty acids and amino acids for somatic growth and reproduction. Assimilated terrestrial-origin fatty acids from shoreline reed particles exceeded available diet, indicating that Daphnia may convert a part of their dietary carbohydrates to saturated fatty acids. This conversion was not observed with birch leaf diets, which had lower carbohydrate content. Subsequent analysis of 21 boreal and subarctic lakes showed that diet of herbivorous zooplankton is mainly based on high-quality phytoplankton rich in essential polyunsaturated fatty acids. The proportion of low-quality diets (bacteria and terrestrial particulate organic matter) was <28% of the assimilated carbon. Taken collectively, the incorporation of terrestrial carbon into zooplankton was not directly related to the concentration of terrestrial organic matter in experiments or lakes, but rather to the low availability of phytoplankton.

  19. Terrestrial carbohydrates support freshwater zooplankton during phytoplankton deficiency

    PubMed Central

    Taipale, Sami J.; Galloway, Aaron W. E.; Aalto, Sanni L.; Kahilainen, Kimmo K.; Strandberg, Ursula; Kankaala, Paula

    2016-01-01

    Freshwater food webs can be partly supported by terrestrial primary production, often deriving from plant litter of surrounding catchment vegetation. Although consisting mainly of poorly bioavailable lignin, with low protein and lipid content, the carbohydrates from fallen tree leaves and shoreline vegetation may be utilized by aquatic consumers. Here we show that during phytoplankton deficiency, zooplankton (Daphnia magna) can benefit from terrestrial particulate organic matter by using terrestrial-origin carbohydrates for energy and sparing essential fatty acids and amino acids for somatic growth and reproduction. Assimilated terrestrial-origin fatty acids from shoreline reed particles exceeded available diet, indicating that Daphnia may convert a part of their dietary carbohydrates to saturated fatty acids. This conversion was not observed with birch leaf diets, which had lower carbohydrate content. Subsequent analysis of 21 boreal and subarctic lakes showed that diet of herbivorous zooplankton is mainly based on high-quality phytoplankton rich in essential polyunsaturated fatty acids. The proportion of low-quality diets (bacteria and terrestrial particulate organic matter) was <28% of the assimilated carbon. Taken collectively, the incorporation of terrestrial carbon into zooplankton was not directly related to the concentration of terrestrial organic matter in experiments or lakes, but rather to the low availability of phytoplankton. PMID:27510848

  20. Water quality and zooplankton in tanks with larvae of Brycon Orbignyanus (Valenciennes, 1949).

    PubMed

    Sipaúba-Tavares, L H; Alvarez, E J da S; Braga, F M de S

    2008-02-01

    Due to the importance of water variables conditions and available food in the development and survival of fish larvae, the current research evaluates the effects of two different food treatments (ration + zooplankton and only zooplankton) and water quality in tanks with Brycon orbignyanus larvae. Total water transparency (45 cm) has been mainly associated with short residence time, continuous water flow and shallowness. Dissolved oxygen ranged between 1.32 and 7.00 mg.L(-1) in tanks with ration + zooplankton and between 1.82 and 7.60 mg.L(-1) in tanks with only zooplankton treatments. Nutrients were directly affected by the addition of ration in water, with the exception of nitrite. Ten Rotifera species were found represented by high densities, ranging between 8.7 x 10(5) and 1.3 x 10(6) org.m(-3), throughout the experimental period (January to March/1996). Cladocera had the lowest density in the four tanks under analysis and ranged between 4.7 x 10(4) and 2.1 x 10(5) org.m(-3) for the six species. Diaphanosoma birgei has been classified as the most frequent species. Since ration + zooplankton produced better larvae yield, this treatment is recommended for Brycon orbignyanus larvae.

  1. The ICES Working Group on Zooplankton Ecology: Accomplishments of the first 25 years

    NASA Astrophysics Data System (ADS)

    Wiebe, Peter H.; Harris, Roger; Gislason, Astthor; Margonski, Piotr; Skjoldal, Hein Rune; Benfield, Mark; Hay, Steve; O'Brien, Todd; Valdés, Luis

    2016-02-01

    The ICES Study Group on Zooplankton Ecology was created in 1991 to address issues of current and future concern within the field of zooplankton ecology. Within three years it became the ICES Working Group on Zooplankton Ecology (ICES WGZE) and this unique group in the world's oceanographic community has now been active for 25 years. This article reviews and synthesizes the products, and major accomplishments of the group. Achievements of the group, including the Zooplankton Methodology Manual, the Zooplankton Status Reports, and the International Zooplankton Symposia, have had an important impact on the wider field. Among the future issues that remain to be addressed by the group are the assessment of exploratory fisheries on zooplankton and micronekton species; further development of the zooplankton time-series; compilation and integration of allometric relationships for zooplankton species, and evaluation of new methodologies for the study of zooplankton distribution, abundance, physiology, and genetics. Marine science is an increasingly global undertaking and groups such as the ICES WGZE will continue to be essential to the advancement of understanding of zooplankton community structure and population dynamics in the world's oceans.

  2. Changes in the pelagic crustacean zooplankton of high-boreal Island Lake, Saskatchewan, associated with uranium mining.

    PubMed

    Melville, G E

    1995-01-01

    Island Lake, Saskatchewan, has become eutrophic, subsaline (salinity between 0.5 and 3.0 g I(-1)) and contaminated with several metals over the last decade. In this study, the crustacean zooplankton community in the lake in early summer 1989 is compared to the community during the early summers of the baseline years 1978 and 1979, based on archived environmental impact assessment samples. Community composition has changed, probably because of salinization and perhaps, to a lesser extent, eutrophication. Calanoid copepods have disappeared, while the numbers of species of cyclopoid copepods and cladocerans have increased. Ceriodaphnia reticulata, present in 1988 only, was more numerous than any other species during all three years. Densities of all other species were very low in 1989, which has led to lower diversity (Simpsons Index). Predation by Chaoborus probably contributed to the low abundances in 1989. The characteristics of the zooplankton community in 1989 were very similar to those of zooplankton in culturally acidified lakes, and indicate that Island Lake is in poor health. The success of Ceriodaphnia, a standard toxicity bioassay genus, is noteworthy under such contaminated conditions. While the taxonomic changes are obvious, the zooplankton data are limited; therefore causes can only be inferred. The study demonstrates the need for more and better ecosystem-specific biological information in order to do environmental impact assessments, in this case for mining in the north.

  3. ZOOPLANKTON SIZE-SPECTRA IN GREAT LAKES COASTAL WATERS

    EPA Science Inventory

    Zooplankton mean size and size-distribution are affected by planktivore pressure and potentially reflect the condition of trophic interactions and ecosystem health. We used an optical plankton counter (OPC) to survey and assess zooplankton size-spectra for twenty locations in Lak...

  4. Zooplankton and the oceanography of the eastern tropical Pacific: A review

    NASA Astrophysics Data System (ADS)

    Fernández-Álamo, María Ana; Färber-Lorda, Jaime

    2006-05-01

    We review the spatial and temporal patterns of zooplankton in the eastern tropical Pacific Ocean and relationships with oceanographic factors that affect zooplankton distribution, abundance and trophic relationships. Large-scale spatial patterns of some zooplankton groups show broad coincidence with surface water masses, circulation, and upwelling regions, in agreement with an ecological and dynamic partitioning of the pelagic ecosystem. The papers reviewed and a new compilation of zooplankton volume data at large-scale show that abundance patterns of zooplankton biomass have their highest values in the upwelling regions, including the Gulf of Tehuantepec, the Costa Rica Dome, the equatorial cold tongue, and the coast of Peru. Some of the first studies of zooplankton vertical distribution were done in this region, and a general review of the topic is presented. The possible physiological implications of vertical migration in zooplankton and the main hypotheses are described, with remarks on the importance of the oxygen minimum zone (OMZ) as a barrier to both the vertical distribution and migration of zooplankton in the region. Recent results, using multiple-net gear, show that vertical distribution is more complex than previously thought. There are some well-adapted species that do live and migrate within the OMZ. Temporal patterns are reviewed and summarized with historical data. Seasonal variations in zooplankton biomass follow productivity cycles in upwelling areas. No zooplankton time series exist to resolve ENSO effects in oceanic regions, but some El Niño events have had effects in the Peru Current ecosystem. Multidecadal periods of up to 50 years show a shift from a warm sardine regime with a low zooplankton biomass to a cool anchovy regime in the eastern Pacific with higher zooplankton biomasses. However, zooplankton volume off Peru has remained at low values since the 1972 El Niño, a trend opposite to that of anchoveta biomass since 1984. Studies of

  5. Zooplankton size selection relative to gill raker spacing in rainbow trout

    USGS Publications Warehouse

    Budy, P.; Haddix, T.; Schneidervin, R.

    2005-01-01

    Rainbow trout Oncorhynchus mykiss are one of the most widely stocked salmonids worldwide, often based on the assumption that they will effectively utilize abundant invertebrate food resources. We evaluated the potential for feeding morphology to affect prey selection by rainbow trout using a combination of laboratory feeding experiments and field observations in Flaming Gorge Reservoir, Utah-Wyoming. For rainbow trout collected from the reservoir, inter-gill raker spacing averaged 1.09 mm and there was low variation among fish overall (SD = 0.28). Ninety-seven percent of all zooplankton observed in the diets of rainbow trout collected in the reservoir were larger than the interraker spacing, while only 29% of the zooplankton found in the environment were larger than the interraker spacing. Over the size range of rainbow trout evaluated here (200-475 mm), interraker spacing increased moderately with increasing fish length; however, the size of zooplankton found in the diet did not increase with increasing fish length. In laboratory experiments, rainbow trout consumed the largest zooplankton available; the mean size of zooplankton observed in the diets was significantly larger than the mean size of zooplankton available. Electivity indices for both laboratory and field observations indicated strong selection for larger-sized zooplankton. The size threshold at which electivity switched from selection against smaller-sized zooplankton to selection for larger-sized zooplankton closely corresponded to the mean interraker spacing for both groups (???1-1.2 mm). The combination of results observed here indicates that rainbow trout morphology limits the retention of different-sized zooplankton prey and reinforces the importance of understanding how effectively rainbow trout can utilize the type and sizes of different prey available in a given system. These considerations may improve our ability to predict the potential for growth and survival of rainbow trout within and

  6. Upslope transport of near-bed zooplankton

    NASA Astrophysics Data System (ADS)

    Zimmer, Cheryl Ann

    2009-09-01

    Zooplankton residing just above the deep-sea floor is an important component of the benthic/benthopelagic food chain. Consuming planktonic particulates and organisms, holoplankton and meroplankton are prey for fish and large invertebrates. Mechanisms controlling their abundances have been explored over relatively long time scales (months to years). Here, zooplankton were sampled every 2 h for 2.2 d using a moored, automated, serial zooplankton pump. The physical regime (currents and temperature) 1-100 m above bottom was measured during an inclusive 24-d period. The study site was located on the upper continental slope (750 m) of the Mid-Atlantic Bight, between the productive shelf and more impoverished rise and abyss. The coupled biological and physical records indicated tidally driven, net upslope transport of the holoplankton. The copepod (74.5% of collections) time series showed marked periodicity with a peak frequency of ˜13 h, approximately the diurnal tide (Fourier analysis). Local maxima corresponded with minimal water temperatures. Moreover, tidal cross-slope flow was highly coherent and 90° out of phase with temperature. Thus, maximal copepod concentrations, originating in colder deeper water, would be transported up the slope by the tide. Estimated net displacement of ˜1 km/d would deliver the animals to continental-shelf depths within a couple weeks. Time series of the much less abundant larvaceans (urochordates) (15.3%) and polychaete larvae (8.9%) showed periodicities with peak frequencies of 8-9 h. Statistical significance of the periodic signals could not be determined due to low numbers. Revealing holoplankton dynamics on scales of hours, this study may contribute to understanding of, for example, copepod feeding and aggregation near the deep-sea floor.

  7. Interannual abundance changes of gelatinous carnivore zooplankton unveil climate-driven hydrographic variations in the Iberian Peninsula, Portugal.

    PubMed

    D'Ambrosio, Mariaelena; Molinero, Juan C; Azeiteiro, Ulisses M; Pardal, Miguel A; Primo, Ana L; Nyitrai, Daniel; Marques, Sónia C

    2016-09-01

    The persistent massive blooms of gelatinous zooplankton recorded during recent decades may be indicative of marine ecosystem changes. In this study, we investigated the potential influence of the North Atlantic climate (NAO) variability on decadal abundance changes of gelatinous carnivore zooplankton in the Mondego estuary, Portugal, over the period 2003-2013. During the 11-year study, the community of gelatinous carnivores encompassed a larger diversity of hydromedusae than siphonophores; the former dominated by Obelia spp., Lizzia blondina, Clythia hemisphaerica, Liriope tetraphylla and Solmaris corona, while the latter dominated by Muggiaea atlantica. Gelatinous carnivore zooplankton displayed marked interannual variability and mounting species richness over the period examined. Their pattern of abundance shifted towards larger abundances ca. 2007 and significant phenological changes. The latter included a shift in the mean annual pattern (from unimodal to bimodal peak, prior and after 2007 respectively) and an earlier timing of the first annual peak concurrent with enhanced temperatures. These changes were concurrent with the climate-driven environmental variability mainly controlled by the NAO, which displayed larger variance after 2007 along with an enhanced upwelling activity. Structural equation modelling allowed depicting cascading effects derived from the NAO influence on regional climate and upwelling variability further shaping water temperature. Such cascading effect percolated the structure and dynamics of the community of gelatinous carnivore zooplankton in the Mondego estuary. Copyright © 2016 Elsevier Ltd. All rights reserved.

  8. A meta-analysis of zooplankton functional traits influencing ecosystem function.

    PubMed

    Hébert, Marie-Pier; Beisner, Beatrix E; Maranger, Roxane

    2016-04-01

    The use of functional traits to characterize community composition has been proposed as a more effective way to link community structure to ecosystem functioning. Organismal morphology, body stoichiometry, and physiology can be readily linked to large-scale ecosystem processes through functional traits that inform on interspecific and species-environment interactions; yet such effect traits are still poorly included in trait-based approaches. Given their key trophic position in aquatic ecosystems, individual zooplankton affect energy fluxes and elemental processing. We compiled a large database of zooplankton traits contributing to carbon, nitrogen, and phosphorus cycling and examined the effect of classification and habitat (marine vs. freshwater) on trait relationships. Respiration and nutrient excretion rates followed mass-dependent scaling in both habitats, with exponents ranging from 0.70 to 0.90. Our analyses revealed surprising differences in allometry and respiration between habitats, with freshwater species having lower length-specific mass and three times higher mass-specific respiration rates. These differences in traits point to implications for ecological strategies as well as overall carbon storage and fluxes based on habitat type. Our synthesis quantifies multiple trait relationships and links organisms to ecosystem processes they influence, enabling a more complete integration of aquatic community ecology and biogeochemistry through the promising use of effect traits.

  9. Zooplankton seasonality across a latitudinal gradient in the Northeast Atlantic Shelves Province

    NASA Astrophysics Data System (ADS)

    Fanjul, Alvaro; Iriarte, Arantza; Villate, Fernando; Uriarte, Ibon; Atkinson, Angus; Cook, Kathryn

    2018-05-01

    Zooplankton seasonality and its environmental drivers were studied at four coastal sites within the Northeast Atlantic Shelves Province (Bilbao35 (B35) and Urdaibai35 (U35) in the Bay of Biscay, Plymouth L4 (L4) in the English Channel and Stonehaven (SH) in the North Sea) using time series spanning 1999-2013. Seasonal community patterns were extracted at the level of broad zooplankton groups and copepod and cladoceran genera using redundancy analysis. Temperature was generally the environmental factor that explained most of the taxa seasonal variations at the four sites. However, between-site differences related to latitude and trophic status (i.e. from oligotrophic to mesotrophic) were observed in the seasonality of zooplankton community, mainly in the pattern of taxa that peaked in spring-summer as opposed to late autumn-winter zooplankton, which were linked primarily to differences in the seasonal pattern of phytoplankton. The percentage of taxa variations explained by environmental factors increased with latitude and trophic status likely related to the increase in the co-variation of temperature and chlorophyll a, as well as in the increase in regularity of the seasonal patterns of both temperature and chlorophyll a from south to north, and of chlorophyll a with trophic status. Cladocerans and cirripede larvae at B35 and U35, echinoderm larvae at L4 and decapod larvae at SH made the highest contribution to shape the main mode of seasonal pattern of zooplankton community, which showed a seasonal delay with latitude, as well as with the increase in trophic status.

  10. Biotic and abiotic factors influencing zooplankton vertical distribution in Lake Huron

    USGS Publications Warehouse

    Nowicki, Carly J.; Bunnell, David B.; Armenio, Patricia M.; Warner, David M.; Vanderploeg, Henry A.; Cavaletto, Joann F.; Mayer, Christine M.; Adams, Jean V.

    2017-01-01

    The vertical distribution of zooplankton can have substantial influence on trophic structure in freshwater systems, particularly by determining spatial overlap for predator/prey dynamics and influencing energy transfer. The zooplankton community in some of the Laurentian Great Lakes has undergone changes in composition and declines in total biomass, especially after 2003. Mechanisms underlying these zooplankton changes remain poorly understood, in part, because few studies have described their vertical distributions during daytime and nighttime conditions or evaluated the extent to which predation, resources, or environmental conditions could explain their distribution patterns. Within multiple 24-h periods during July through October 2012 in Lake Huron, we conducted daytime and nighttime sampling of zooplankton, and measured food (chlorophyll-a), temperature, light (Secchi disk depth), and planktivory (biomass of Bythotrephes longimanus and Mysis diluviana). We used linear mixed models to determine whether the densities for 22 zooplankton taxa varied between day and night in the epi-, meta-, and hypolimnion. For eight taxa, higher epilimnetic densities were observed at night than during the day; general linear models revealed these patterns were best explained by Mysis diluviana (four taxa), Secchi disk depth (three taxa), epilimnetic water temperature (three taxa), chlorophyll (one taxon), and biomass of Bythotrephes longimanus (one taxon). By investigating the potential effects of both biotic and abiotic variables on the vertical distribution of crustacean zooplankton and rotifers, we provide descriptions of the Lake Huron zooplankton community and discuss how future changes in food web dynamics or climate change may alter zooplankton distribution in freshwater environments.

  11. Reduced growth and survival of larval razorback sucker fed selenium-laden zooplankton

    USGS Publications Warehouse

    Hamilton, Steven J.; Buhl, Kevin J.; Bullard, Fern A.; McDonald, Susan

    2005-01-01

    Four groups of larval razorback sucker, an endangered fish, were exposed to selenium-laden zooplankton and survival, growth, and whole-body residues were measured. Studies were conducted with 5, 10, 24, and 28-day-old larvae fed zooplankton collected from six sites adjacent to the Green River, Utah. Water where zooplankton were collected had selenium concentrations ranging from <0.4 to 78 μg/L, and concentrations in zooplankton ranged from 2.3 to 91 μg/g dry weight. Static renewal tests were conducted for 20 to 25 days using reference water with selenium concentrations of <1.1 μg/L. In all studies, 80–100% mortality occurred in 15–20 days. In the 28-day-old larvae, fish weight was significantly reduced 25% in larvae fed zooplankton containing 12 μg/g selenium. Whole-body concentrations of selenium ranged from 3.7 to 14.3 μg/g in fish fed zooplankton from the reference site (Sheppard Bottom pond 1) up to 94 μg/g in fish fed zooplankton from North Roadside Pond. Limited information prior to the studies suggested that the Sheppard pond 1 site was relatively clean and suitable as a reference treatment; however, the nearly complete mortality of larvae and elevated concentrations of selenium in larvae and selenium and other elements in zooplankton indicated that this site was contaminated with selenium and other elements. Selenium concentrations in whole-body larvae and in zooplankton from all sites were close to or greater than toxic thresholds where adverse effects occur in fish. Delayed mortality occurred in larvae fed the two highest selenium concentrations in zooplankton and was thought due to an interaction with other elements.

  12. Regional zooplankton dispersal provides spatial insurance for ecosystem function.

    PubMed

    Symons, Celia C; Arnott, Shelley E

    2013-05-01

    Changing environmental conditions are affecting diversity and ecosystem function globally. Theory suggests that dispersal from a regional species pool may buffer against changes in local community diversity and ecosystem function after a disturbance through the establishment of functionally redundant tolerant species. The spatial insurance provided by dispersal may decrease through time after environmental change as the local community monopolizes resources and reduces community invasibility. To test for evidence of the spatial insurance hypothesis and to determine the role dispersal timing plays in this response we conducted a field experiment using crustacean zooplankton communities in a subarctic region that is expected to be highly impacted by climate change - Churchill, Canada. Three experiments were conducted where nutrients, salt, and dispersal were manipulated. The three experiments differed in time-since-disturbance that the dispersers were added. We found that coarse measures of diversity (i.e. species richness, evenness, and Shannon-Weiner diversity) were generally resistant to large magnitude disturbances, and that dispersal had the most impact on diversity when dispersers were added shortly after disturbance. Ecosystem functioning (chl-a) was degraded in disturbed communities, but dispersal recovered ecosystem function to undisturbed levels. This spatial insurance for ecosystem function was mediated through changes in community composition and the relative abundance of functional groups. Results suggest that regional diversity and habitat connectivity will be important in the future to maintain ecosystem function by introducing functionally redundant species to promote compensatory dynamics. © 2012 Blackwell Publishing Ltd.

  13. A census of marine zooplankton in the tropical/subtropical Atlantic from the surface to 5000 m.

    NASA Astrophysics Data System (ADS)

    Wiebe, P. H.; Bucklin, A.; Madin, L.; Angel, M. V.; Sutton, T.; Pages, F.; Hopcroft, R. R.

    2006-12-01

    Zooplankton from tropical/subtropical waters in the Atlantic Ocean were sampled from the surface to 5000 m, with a particular focus on the mesopelagic, bathypelagic, abyssopelagic zones. Sampling, on a cruise sponsored by the NOAA Ocean Exploration Program and the Census of Marine Life, was conducted at five stations from the northern Sargasso Sea to the equatorial waters northeast of Brazil. Environmental data and zooplankton samples were collected using three Multiple Opening/Closing Nets and Environmental Sensing Systems (MOCNESS): a 10-m opening/closing trawl with 335-um mesh nets sampled from 5000 to 1000 m and two smaller MOCNESS with similar or smaller mesh sampled the upper 1000 m. Ring net and water bottle casts, and blue-water SCUBA diving were also carried out. Samples were analyzed at sea using traditional morphological taxonomic approaches by a team of experts, followed by molecular systematic analysis, including determination of a DNA barcode (i.e., short DNA sequence for species recognition) for each species. Over 500 species were identified onboard ship; more than 1000 specimens were placed in a queue for barcoding; 87 species were barcoded at sea. For several taxonomic groups, a significant fraction of the region's species were collected and identified. Sixty-five species of planktonic ostracods were identified at sea out of the 140 known for the North Atlantic Ocean, with at least six undescribed species collected and the first DNA barcode for a planktonic ostracod obtained. At-sea analysis of samples also yielded identified specimens for more than 40 species of molluscs (pteropods, heteropods, etc.), more than 100 species of jellyfish, several hundred species of copepods, and more than 100 species of fish. In all, taxonomists estimated that at least 12 - 15 new species will be described from this effort. The special deployment of trawls to sample large volumes at great depths for small zooplankton yielded preliminary confirmation that species

  14. Zooplankton communities in Cenderawasih Bay National Park, West Papua: can their composition be used to predict whale shark Rhincodon typus Smith, 1828 appearance frequencies?

    NASA Astrophysics Data System (ADS)

    Marliana, S. N.; Bataona, M.; Ihsan, E. N.

    2018-03-01

    The use of lift net fishing vessels in Cenderawasih Bay National Park (CBNP) along with the increased popularity of CBNP as an ecotourism area is suspected to have an impact on the behavior and population of its whale sharks Rhincodon typus Smith, 1828. The differing frequency of whale shark appearances along the waters of CBNP has been alleged to be related to the distribution of the whale sharks’ food sources, one of which is zooplankton. This preliminary research aimed to investigate the composition of the zooplankton community in CBNP based on distance from the coast and difference in locations, and to use the pattern of zooplankton compositional variation as a basis for indication of the frequency of whale shark appearances. There were clear differences in the composition and diversity of zooplankton communities among sampling stations, but these differences were not strong enough to infer the cause of the different whale shark appearance frequencies in different locations. Nevertheless, the waters of CBNP had an equal availability of zooplankton for whale sharks. With the increasing popularity of whale shark tourism, understanding the species’ feeding habits is critical to the sustainability of both the industry and the enigmatic species on which it depends.

  15. Retention and characteristics of microplastics in natural zooplankton taxa from the East China Sea.

    PubMed

    Sun, Xiaoxia; Liu, Tao; Zhu, Mingliang; Liang, Junhua; Zhao, Yongfang; Zhang, Bo

    2018-05-30

    The ubiquitous presence and persistence of microplastics (MPs) in aquatic environments have become of particular concern in recent years. Biological interactions are among the key processes that affect the impact and fate of MPs in the oceans. Zooplankton is one of the most sensitive taxa because their prey is approximately the same size as MPs. However, the status of MPs in zooplankton within natural marine environments remains largely unknown. By focusing on zooplankton in the East China Sea, the characteristics, bioaccumulated concentration, and retention of MPs for 10 zooplankton groups were systematically studied. Three types of MPs were found in zooplankton: fibres, pellets, and fragments. The fibres (54.6%) were more common than the other two types. The average lengths of the fibres, pellets, and fragments were 295.2 ± 348.6 μm, 20.3 ± 11.0 μm, and 82.4 ± 80.5 μm, respectively. Nineteen polymers were detected in the zooplankton via the Thermo Scientific Nicolet iN10 Infrared Microscope. Polymerized oxidized organic material and polyester were dominant, accounting for 35.9% and 25.6% of the polymers, respectively. The bioaccumulated concentration of MPs in the 10 zooplankton taxa varied from 0.13 pieces/zooplankton for Copepoda to 0.35 pieces/zooplankton for Pteropoda. The bioaccumulated concentration was negatively correlated with the abundance of zooplankton, showing a significant biological dilution effect. The bioaccumulated concentration was also influenced by the feeding mode of zooplankton, showing a trend of omnivorous > carnivorous > herbivorous. High retention of MPs was found in the zooplankton community of the East China Sea, achieving 19.7 ± 22.4 pieces/m 3 . This is much higher than the MP retention in zooplankton from other reported sea areas. By revealing the characteristics and retention of MPs in the natural zooplankton taxa from the East China Sea, this research identified the influence that MPs have

  16. Global dynamics of zooplankton and harmful algae in flowing habitats

    NASA Astrophysics Data System (ADS)

    Hsu, Sze-Bi; Wang, Feng-Bin; Zhao, Xiao-Qiang

    This paper is devoted to the study of two advection-dispersion-reaction models arising from the dynamics of harmful algae and zooplankton in flowing-water habitats where a main channel is coupled to a hydraulic storage zone, representing an ensemble of fringing coves on the shoreline. For the system modeling the dynamics of algae and their toxin that contains little limiting nutrient, we establish a threshold type result on the global attractivity in terms of the basic reproduction ratio for algae. For the model with zooplankton that eat the algae and are inhibited by the toxin produced by algae, we show that there exists a coexistence steady state and the zooplankton is uniformly persistent provided that two basic reproduction ratios for algae and zooplankton are greater than unity.

  17. Analysis of six groups of zooplankton in samples taken in 1978/79 at the proposed OTEC site in the eastern Gulf of Mexico off Tampa Bay

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Flock, M.E.; Hopkins, T.L.

    1981-05-01

    Continued analysis has been made of the 33 zooplankton collections made at the proposed OTEC site in the Gulf of Mexico off Tampa Bay. Six groups of zooplankton - siphonophores (Calycophora), pteropods (Thecosomata), chaetognaths, thaliaceans, euphausiids and amphipods were quantitatively investigated. Numbers and biomass were determined for all taxa and diurnal, seasonal and depth trends were discussed. Considering the present study and the previous investigation of the copepod population, this proposed OTEC site is probably one of the faunistically better known locales in the Gulf of Mexico and Caribbean.

  18. Deep-water zooplankton of the Guaymas basin hydrothermal vent field

    NASA Astrophysics Data System (ADS)

    Wiebe, Peter H.; Copley, Nancy; Van Dover, Cindy; Tamse, Armando; Manrique, Fernando

    1988-06-01

    Zooplankton from the Guaymas Basin deep-sea vent field were collected with a 1 m 2 MOCNESS to examine the distribution of total standing stock, taxonomic composition, size-frequency distribution of zooplankton, and the species composition of calanoid copepods. Low altitude (˜ 100 m above the bottom) horizontal tows along and across the axis of the basin's southern trough, and oblique tows from the bottom of the basin (˜ 2000 m) to the surface were made. Total biomass in near-bottom samples (range: 13-46 cc/1000 m 3) was only about a factor of 10 lower than in the upper 100 m. However, there was little or no evidence for enrichment of biomass in the ˜ 100 m zone above the vent site relative to biomass at the same depth horizon over non-vent areas. Total numbers of individuals ranged between 2600 and 4800/1000 m 3. Calanoid copepods consistently ranked first in abundance of counts of the taxa, followed by cyclopoid copepods, ostracods, chaetognaths, and amphipods. Other less abundant taxa, but in some cases important contributors to total biomass, were coelenterates (siphonophores, medusae), decapod shrimp, and polychaetes. Size-frequency analysis of individuals from each taxon indicated that the biomass and abundance spectra do not fit the theoretically expected spectra based on weight-dependent metabolism and growth. The pyramid of biomass was substantially different from the pyramid of numbers in this deep-sea community. Of the 67 species of copepods identified in two samples taken on low altitude tows, only 15 co-occurred in both samples. Many of the species in this relatively diverse community remain to be described. Larval and post-larval forms of benthic clams, gastropods, polychaetes, and crustaceans associated with the vents were collected 100-200 m above the southern trough, indicating the post-larvae may play an active role in dispersal of hydrothermal vent species.

  19. Investigating long-term interactions between phytoplankton and zooplankton in the NE Atlantic and North Sea

    NASA Astrophysics Data System (ADS)

    Khouri, R.; Beaulieu, C.; Henson, S.; Martin, A. P.; Edwards, M.

    2016-02-01

    It is believed that changes in phytoplankton community have happened in the North Sea and NE Atlantic in the past decades. Since phytoplankton are the base of the marine food web, it is essential to understand the causes of such behaviour due its potential to induce change in the wider ecosystem. Whilst the impact of environmental controls, such as climate, have received considerable attention, phytoplankton can also be affected by zooplankton grazing. We investigate how changes in zooplankton impact phytoplankton populations and community composition, and vice-versa. We use data from the Continuous Plankton Recorder survey, an unique dataset that uses the same sampling methodology since 1958 and thus provides long and comparable plankton time-series. We apply statistical modelling to describe the interaction between phytoplankton and zooplankton. The analysis is inspired from techniques available in econometrics literature, which do not require assumptions of normality, independence or stationarity of the time-series. In particular, we discuss wether climatic factors or zooplankton grazing are more relevant to the variability in phytoplankton abundance and community composition.

  20. Zooplankton responses to sandbar opening in a tropical eutrophic coastal lagoon

    NASA Astrophysics Data System (ADS)

    Santangelo, Jayme M.; de M. Rocha, Adriana; Bozelli, Reinaldo L.; Carneiro, Luciana S.; de A. Esteves, Francisco

    2007-02-01

    The effects of a disturbance by sandbar opening on the zooplankton community were evaluated through a long-term study in an eutrophic and oligohaline system, Imboassica Lagoon, Rio de Janeiro, Brazil. Zooplankton samples and limnological data were collected monthly from March 2000 to February 2003. Before the sandbar was opened in February 2001, the lagoon showed eutrophic conditions, with high mean nutrient concentrations and low salinity (total nitrogen - TN = 190.28 μM, chlorophyll a content - Chl. a = 104.60 μg/L and salinity = 0.87'). During this period, the zooplankton species present, such as the rotifers Brachionus calyciflorus and Brachionus havanaensis, were typical of freshwater to oligohaline and eutrophic environments. After the sandbar opening, the lagoon changed to a lower trophic status and increased salinity (TN = 55.11 μM, Chl. a = 27.56 μg/L and salinity = 19.64'). As a result, the zooplankton community came to consist largely of the rotifer Brachionus plicatilis, marine copepods and meroplanktonic larvae, mainly Gastropoda. Salinity was the main force structuring the zooplankton community after the sandbar opening. Two years after this episode, the prior zooplankton community had not reestablished itself, indicating a low resilience to this disturbance. The conditions developed prior to a sandbar opening can be crucial to the community responses in the face of this disturbance and for the capacity of the original zooplankton community to re-establish itself.

  1. Small-scale zooplankton aggregations at the front of a Kuroshio warm-core ring

    NASA Astrophysics Data System (ADS)

    Yamamoto, Tamiji; Nishizawa, Satoshi

    1986-11-01

    A Longhurst-Hardy Plankton Recorder was used to study the small-scale zooplankton distribution across the front of a Kuroshio warm-core ring in June 1979. Zooplankton were strongly aggregated in the frontal region; patches of zooplankton and phytoplankton were spatially separated. A major part of the zooplankton assemblage consisted of neritic forms such as cladocerans and indicator species of the cold Oyashio water. This implies that lateral entrainment of coastal waters, which is directly influenced by the Oyashio, was an important factor in the formation of the aggregations at the Kuroshio warm-core ring front. Variation in the distribution of abundance peaks of individual zooplankton species was also observed. Futhermore, zooplankton showed more intensive non-randomness (aggregation) than phytoplankton and non-motile euphausiid's eggs. Thus, biological processes, such as motility and prey-predator interaction, also appeared to be regulating the patchiness.

  2. Pilot Study on Potential Impacts of Fisheries-Induced Changes in Zooplankton Mortality on Marine Biogeochemistry

    NASA Astrophysics Data System (ADS)

    Getzlaff, Julia; Oschlies, Andreas

    2017-11-01

    In this pilot study we link the yield of industrial fisheries to changes in the zooplankton mortality in an idealized way accounting for different target species (planktivorous fish—decreased zooplankton mortality; large predators—increased zooplankton mortality). This indirect approach is used in a global coupled biogeochemistry circulation model to estimate the range of the potential impact of industrial fisheries on marine biogeochemistry. The simulated globally integrated response on phytoplankton and primary production is in line with expectations—a high (low) zooplankton mortality results in a decrease (increase) of zooplankton and an increase (decrease) of phytoplankton. In contrast, the local response of zooplankton and phytoplankton depends on the region under consideration: In nutrient-limited regions, an increase (decrease) in zooplankton mortality leads to a decrease (increase) in both zooplankton and phytoplankton biomass. In contrast, in nutrient-replete regions, such as upwelling regions, we find an opposing response: an increase (decrease) of the zooplankton mortality leads to an increase (decrease) in both zooplankton and phytoplankton biomass. The results are further evaluated by relating the potential fisheries-induced changes in zooplankton mortality to those driven by CO2 emissions in a business-as-usual 21st century emission scenario. In our idealized case, the potential fisheries-induced impact can be of similar size as warming-induced changes in marine biogeochemistry.

  3. Microcystin production by Microcystis aeruginosa exposed to different stages of herbivorous zooplankton.

    PubMed

    Jang, Min-Ho; Ha, Kyong; Takamura, Noriko

    2008-04-01

    Microcystin (MC) production by four monoclonal Microcystis aeruginosa strains was evaluated in response to infochemicals (indirect exposure) released from different stages of herbivorous zooplankton (neonate/juvenile and adult Daphnia magna and Moina macrocopa). The intracellular MC and extracellular MC concentrations were significantly different among the control and treatments with zooplankton culture media filtrates (p<0.05), and in most cases MC production was significantly higher (p<0.05) in strains exposed to infochemicals released from adult zooplankton rather than those of neonate/juvenile zooplankton in four strains of M. aeruginosa. Compared to intracellular MC (385.0-5598.6microg g(-1)DW), very low concentrations of extracellular MC (9.9-737.6microg ml(-1)) were released, but both showed similar temporal patterns over the course of the experiment. This result might be attributed to the fact that adult zooplankton produced more infochemical signals than equal numbers of smaller juveniles and neonates. It is the first study to provide evidence that MC production might be impacted by infochemicals released from different stages of zooplankton, mediated with physiological characteristics, body size, and feeding habits.

  4. Terrestrial carbon is a resource, but not a subsidy, for lake zooplankton

    USGS Publications Warehouse

    Kelly, Patrick T.; Solomon, Christopher T.; Weidel, Brian C.; Jones, Stuart E.

    2014-01-01

    Inputs of terrestrial organic carbon (t-OC) into lakes are often considered a resource subsidy for aquatic consumer production. Although there is evidence that terrestrial carbon can be incorporated into the tissues of aquatic consumers, its ability to enhance consumer production has been debated. Our research aims to evaluate the net effect of t-OC input on zooplankton. We used a survey of zooplankton production and resource use in ten lakes along a naturally occurring gradient of t-OC concentration to address these questions. Total and group-specific zooplankton production was negatively related to t-OC. Residual variation in zooplankton production that was not explained by t-OC was negatively related to terrestrial resource use (allochthony) by zooplankton. These results challenge the designation of terrestrial carbon as a resource subsidy; rather, the negative effect of reduced light penetration on the amount of suitable habitat and the low resource quality of t-OC appear to diminish zooplankton production. Our findings suggest that ongoing continental-scale increases in t-OC concentrations of lakes will likely have negative impacts on the productivity of aquatic food webs.

  5. COMPARISONS OF ZOOPLANKTON COMMUNITY SIZE STRUCTURE IN THE GREAT LAKES

    EPA Science Inventory

    Zooplankton mean-size and size-spectra distribution potentially reflect the condition of trophic interactions and ecosystem health because they are affected by both resource availability and planktivore pressure. We assessed zooplankton mean-size and size-spectra using an optical...

  6. Seasonal and interannual changes in zooplankton community in the coastal zone of the North-Eastern Black Sea.

    NASA Astrophysics Data System (ADS)

    Nikishina, A. B.; Arashkevich, E. G.; Louppova, N. E.; Soloviev, K. A.

    2009-04-01

    The phenological response of zooplankton community is a result of simultaneous effect of several factors: feeding conditions, predation abundance, periods of reproduction of common species and hydrodynamic regime. The Black sea ecosystem is one of the best studied in the world, otherwise there is still some illegibility about ecosystem functioning and especially about environmental factors influence on zooplankton dynamics. For the last twenty years pelagic system of the Black Sea has changed dramatically. The invasion of ctenophore Mnemiopsis leidyi in the middle of eighties caused significant decrease in zooplankton biomass. It also altered plankton structure and shifted periods of mass reproduction of the abundant species and biomass maximums. For instance, before the invasion of Mnemiopsis the maximum of zooplankton biomass was observed in autumn (data by A. Pasternak, 1983), and after that the maximum moved to the spring (data by V.S. Khoroshilov, 1999). The incursion of ctenophore Beroe ovata feeding on Mnemiopsis in the nineties has led to the enhancement of zooplankton community. Although the detailed analysis of seasonal zooplankton dynamics wasn't performed in the recent years. The object of our research was to study seasonal and interannual changes in zooplankton community in the coastal area of the North-Eastern Black Sea. Analysis of interannual, seasonal and spatial changes in zooplankton distribution, abundance and species composition along with age structure of dominant populations were performed based on investigations during 2005-2008 years in the North-Eastern Black Sea. Plankton samples were obtained monthly since June 2005 till December 2008. Plankton was collected at three stations at depths 25m, 50m and 500-1000m along the transect from the Blue Bay to the open sea. Sampling of gelatinous animals was conducted in parallel to the zooplankton sampling. Simultaneously with plankton sampling CTD data were obtained. The feeding conditions were

  7. Stable carbon isotopes of zooplankton lipid components as a tool to differentiate between pelagic and ice algae as a food source for zooplankton in the Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Bendle, J. A.; Moossen, H.; Jamieson, R.; Wold, A.; Falk-Peterson, S.

    2009-12-01

    Every summer in the Arctic, the ice cover melts and releases sea-ice algae into the surrounding waters. How important are these algae, consisting mostly of diatoms, as a major food source for zooplankton and higher trophic levels? The answer to this question is timely, given predictions for the loss of summer sea ice cover this century. We are investigating the use of compound specific carbon isotopes as a tool to differentiate between lipids found in zooplankton which feed on diatoms living in the open ocean and zooplankton which feed on diatoms derived from the ice. To this effect we analyse the carbon isotopic signature of the major fatty acids and alcohols and that of the major sterols collected during the Arctic ICE CHASER expedition aboard the RRV James Clark Ross in 2008. Twenty three zooplankton samples comprised of 11 different species were collected in four different depth intervals at three different sites around Svalbard. The sites had variable ice cover, from open water to solid ice. We analysed the lipid composition of the zooplankton samples with special emphasis on the fatty acids and fatty alcohols bound as esters. Esters are produced by zooplankton to function as an energy reservoir. Initial results such as the occurrence of Brassicasterol, 24 methylencholest 5 en-3β-ol and Desmosterol, high amounts of the C20:5ω3 fatty acid and high C16:1ω7/C16:0-fatty acid ratios suggest that diatoms are an important part of the zooplankton diet.

  8. Development of a Multimetric Indicator of Pelagic Zooplankton ...

    EPA Pesticide Factsheets

    We used zooplankton data collected for the 2012 National Lakes Assessment (NLA) to develop multimetric indices (MMIs) for five aggregated ecoregions of the conterminous USA (Coastal Plains, Eastern Highlands, Plains, Upper Midwest, and Western Mountains and Xeric [“West’]). We classified candidate metrics into six categories: We evaluated the performance of candidate metrics, and used metrics that had passed these screens to calculate all possible candidate MMIs that included at least one metric from each category. We selected the candidate MMI that had high responsiveness, a reasonable value for repeatability, low mean pairwise correlation among component metrics, and, when possible, a maximum pairwise correlation among component metrics that was <0.7. We were able to develop MMIs that were sufficiently responsive and repeatable to assess ecological condition for the NLA without the need to reduce the effects of natural variation using models. We did not observe effects of either lake size, lake origin, or site depth on the MMIs. The MMIs appear to respond more strongly to increased nutrient concentrations than to shoreline habitat conditions. Improving our understanding of how zooplankton assemblages respond to increased human disturbance, and obtaining more complete autecological information for zooplankton taxa would likely improve MMIs developed for future assessments. Using zooplankton assemblage data from the 2012 National Lakes Assessment (NLA),

  9. A new modelling approach for zooplankton behaviour

    NASA Astrophysics Data System (ADS)

    Keiyu, A. Y.; Yamazaki, H.; Strickler, J. R.

    We have developed a new simulation technique to model zooplankton behaviour. The approach utilizes neither the conventional artificial intelligence nor neural network methods. We have designed an adaptive behaviour network, which is similar to BEER [(1990) Intelligence as an adaptive behaviour: an experiment in computational neuroethology, Academic Press], based on observational studies of zooplankton behaviour. The proposed method is compared with non- "intelligent" models—random walk and correlated walk models—as well as observed behaviour in a laboratory tank. Although the network is simple, the model exhibits rich behavioural patterns similar to live copepods.

  10. Ocean acidification reduces demersal zooplankton that reside in tropical coral reefs

    NASA Astrophysics Data System (ADS)

    Smith, Joy N.; de'Ath, Glenn; Richter, Claudio; Cornils, Astrid; Hall-Spencer, Jason M.; Fabricius, Katharina E.

    2016-12-01

    The in situ effects of ocean acidification on zooplankton communities remain largely unexplored. Using natural volcanic CO2 seep sites around tropical coral communities, we show a threefold reduction in the biomass of demersal zooplankton in high-CO2 sites compared with sites with ambient CO2. Differences were consistent across two reefs and three expeditions. Abundances were reduced in most taxonomic groups. There were no regime shifts in zooplankton community composition and no differences in fatty acid composition between CO2 levels, suggesting that ocean acidification affects the food quantity but not the quality for nocturnal plankton feeders. Emergence trap data show that the observed reduction in demersal plankton may be partly attributable to altered habitat. Ocean acidification changes coral community composition from branching to massive bouldering coral species, and our data suggest that bouldering corals represent inferior daytime shelter for demersal zooplankton. Since zooplankton represent a major source of nutrients for corals, fish and other planktivores, this ecological feedback may represent an additional mechanism of how coral reefs will be affected by ocean acidification.

  11. Effects of the ``Amoco Cadiz'' oil spill on zooplankton

    NASA Astrophysics Data System (ADS)

    Samain, J. F.; Moal, J.; Coum, A.; Le Coz, J. R.; Daniel, J. Y.

    1980-03-01

    A survey of zooplankton physiology on the northern coast of Brittany (France) was carried out over a one-year period by comparing two estuarine areas, one oil-polluted area (Aber Benoit) following the oil spill by the tanker “Amoco Cadiz” and one non-oil-polluted area (Rade de Brest). A new approach to an ecological survey was made by describing trophic relationships using analysis of digestive enzyme equipment (amylase and trypsin) of zooplankton organisms, mesoplankton populations and some selected species. These measurements allowed determination of (a) groups of populations with homogeneous trophic and faunistic characteristics and (b) groups of species with homogeneous trophic characteristics. The study of the appearance of these groups over a one-year period revealed the succession of populations and their adaptation to the environment on the basis of biochemical analysis. These phenomena observed in the compared areas showed marked differences in the most polluted areas during the productive spring period. Specific treatment of the data using unusual correlations between digestive enzymes is discussed in terms of the immediate effect on the whole population and on a copepod ( Anomalocera patersoni) living in the upper 10 cm.

  12. Seasonal variations in zooplankton abundances in the Iturbide reservoir (Isidro Fabela, State of Mexico, Mexico).

    PubMed

    Sarma, S S S; Osnaya-Espinosa, Lidia Rosario; Aguilar-Acosta, Claudia Romina; Nandini, S

    2011-07-01

    This studywas undertaken to quantify the seasonal variations of zooplankton (rotifers, cladocerans and copepods) and selected physico-chemical variables (temperature, pH, conductivity, Secchi disc transparency, dissolved oxygen, ammonia, nitrate and phosphate concentrations) in the Iturbide dam. Monthly zooplankton samples (50 l filtered through 50 microm mesh, in duplicates from each of the 4 stations) were collected from February 2008 to January 2009. Simultaneously physico-chemical variables were measured. The zooplankton samples were fixed in 4% formalin in the field. In general, the temperature ranged from 9 to 16 degrees C, rarely exceeding 20 degrees C. Secchi transparency was nearly 100% since the reservoir was shallow (< 2 m) even during the rainy seasons. Dissolved oxygen was generally high, 13-18 mg l(-1). Nitrate levels (10 to 170 microg l(-1)) were low while phosphates were relatively high (9 to 35 microg l(-1)). The Iturbide reservoir was dominated by rotifer species. We encountered in all, 55 taxa of rotifers, 9 cladocerans and 2 copepods. The rotifer families Trichocercidae and Notommatidae had the highest number of species (7 each) followed by Colurellidae and Lecanidae (6 and 5 species, respectively). Trichocerca elongata, Ascomorpha ovalis, K. americana, K. cochlearis, Lepadella patella and Pompholyx sulcata were the dominant rotifers during the study period. On an annual average, rotifer density ranged between 50-200 ind.(-1). Among crustaceans Chydorus brevilabris and Macrothrix triserialis were most abundant. The maximal density of these cladocerans was about 50 ind. l(-1). Copepods were much lower in numbers (< 20 ind. l(-1)). In general the density of zooplankton was higher during summer months (April to July) than during winter. Shannon-Wiener diversity index varied from 1.0 to 4.3 depending on the site and the sampling period. Based on the data of Secchi transparency and nutrient concentrations, the Iturbide reservoir appeared to be

  13. Roles of predation, food, and temperature in structuring the epilimnetic zooplankton populations in Lake Ontario, 1981-1986

    USGS Publications Warehouse

    Johannsson, Ora E.; O'Gorman, Robert

    1991-01-01

    We sampled phytoplankton, zooplankton, and alewives Alosa pseudoharengus and measured water temperature in Lake Ontario during 1981–1986. Through the use of general linear regression models we then sought evidence of control of the eplimnetic zooplankton community (mid-July to mid-October) by producers, consumers, and temperature. Our measures of the zooplankton community were total biomass, cladoceran biomass, and the ratio of large to small Daphnia spp. (D. galeata mendotae andD. retrocurva). Zooplankton population variables assessed were abundance, egg ratio, and productivity. Through factor analysis, factors were created from the standardized, transformed independent variables for use in the regression analyses. Regression models showed significant inverse relationships (P < 0.05) between alewives and Bosmina longirostris (abundance, production, and egg ratio), Ceriodaphnia lacustris (egg ratio), andDaphnia retrocurva (egg ratio). Bosmina longirostris and D. retrocurva egg ratios were inversely related to algae biomass (<20 μm), thus the smaller algae might be controlled in part by the zooplankton community. Production of C. lacustris was directly related to temperature, as was the production and abundance of Tropocyclops prasinus. The annual size-frequency distributions of B. longirostris and D. retrocurva were inversely related to yearling alewife abundance and directly related to adult alewife abundance, which suggested that yearlings use a particulate-feeding mode on these zooplankton species more frequently than adults. We found no significant negative correlations among the zooplankton species, which suggested that interzooplankton predation and competition were not as important in structuring the community as were planktivory and temperature.

  14. Bioavailability and uptake of smelter emissions in freshwater zooplankton in northeastern Washington, USA lakes using Pb isotope analysis and trace metal concentrations.

    PubMed

    Child, A W; Moore, B C; Vervoort, J D; Beutel, M W

    2018-07-01

    The upper Columbia River and associated valley systems are highly contaminated with metal wastes from nearby smelting operations in Trail, British Columbia, Canada (Teck smelter), and to a lesser extent, Northport, Washington, USA (Le Roi smelter). Previous studies have investigated depositional patterns of airborne emissions from these smelters, and documented the Teck smelter as the primary metal contamination source. However, there is limited research directed at whether these contaminants are bioavailable to aquatic organisms. This study investigates whether smelter derived contaminants are bioavailable to freshwater zooplankton. Trace metal (Zn, Cd, As, Sb, Pb and Hg) concentrations and Pb isotope compositions of zooplankton and sediment were measured in lakes ranging from 17 to 144 km downwind of the Teck smelter. Pb isotopic compositions of historic ores used by both smelters are uniquely less radiogenic than local geologic formations, so when zooplankton assimilate substantial amounts of smelter derived metals their compositions deviate from local baseline compositions toward ore compositions. Sediment metal concentrations and Pb isotope compositions in sediment follow significant (p < 0.001) negative exponential and sigmoidal patterns, respectively, as distance from the Teck smelting operation increases. Zooplankton As, Cd, and Sb contents were related to distance from the Teck smelter (p < 0.05), and zooplankton Pb isotope compositions suggest As, Cd, Sb and Pb from historic and current smelter emissions are biologically available to zooplankton. Zooplankton from lakes within 86 km of the Teck facility display isotopic evidence that legacy ore pollution is biologically available for assimilation. However, without water column data our study is unable to determine if legacy contaminants are remobilized from lake sediments, or erosional pathways from the watershed. Copyright © 2018 Elsevier Ltd. All rights reserved.

  15. Climate-mediated changes in zooplankton community structure for the eastern Bering Sea

    NASA Astrophysics Data System (ADS)

    Eisner, Lisa B.; Napp, Jeffrey M.; Mier, Kathryn L.; Pinchuk, Alexei I.; Andrews, Alexander G.

    2014-11-01

    Zooplankton are critical to energy transfer between higher and lower trophic levels in the eastern Bering Sea ecosystem. Previous studies from the southeastern Bering Sea shelf documented substantial differences in zooplankton taxa in the Middle and Inner Shelf Domains between warm and cold years. Our investigation expands this analysis into the northern Bering Sea and the south Outer Domain, looking at zooplankton community structure during a period of climate-mediated, large-scale change. Elevated air temperatures in the early 2000s resulted in regional warming and low sea-ice extent in the southern shelf whereas the late 2000s were characterized by cold winters, extensive spring sea ice, and a well-developed pool of cold water over the entire Middle Domain. The abundance of large zooplankton taxa such as Calanus spp. (C. marshallae and C. glacialis), and Parasagitta elegans, increased from warm to cold periods, while the abundance of gelatinous zooplankton (Cnidaria) and small taxa decreased. Biomass followed the same trends as abundance, except that the biomass of small taxa in the southeastern Bering Sea remained constant due to changes in abundance of small copepod taxa (increases in Acartia spp. and Pseudocalanus spp. and decreases in Oithona spp.). Statistically significant changes in zooplankton community structure and individual species were greatest in the Middle Domain, but were evident in all shelf domains, and in both the northern and southern portions of the eastern shelf. Changes in community structure did not occur abruptly during the transition from warm to cold, but seemed to begin gradually and build as the influence of the sea ice and cold water temperatures persisted. The change occurred one year earlier in the northern than the southern Middle Shelf. These and previous observations demonstrate that lower trophic levels within the eastern Bering Sea respond to climate-mediated changes on a variety of time scales, including those shorter than

  16. Distinct zooplankton regime shift patterns across ecoregions of the U.S. Northeast continental shelf Large Marine Ecosystem

    NASA Astrophysics Data System (ADS)

    Morse, R. E.; Friedland, K. D.; Tommasi, D.; Stock, C.; Nye, J.

    2017-01-01

    We investigated regime shifts in seasonal zooplankton communities of the Northeast continental shelf Large Marine Ecosystem (NES) and its subcomponent ecoregions over a multi-decadal period (1977-2013). Our cross ecoregion analysis shows that regime shifts in different ecoregions often exhibited very distinct characteristics, emphasizing more granular fluctuations in NES plankton communities relative to previous work. Shifts early in the time series generally reflected an increase in abundance levels. The response of zooplankton abundance within fall communities was more similar among ecoregions than for spring communities. The Gulf of Maine exhibited highly distinct patterns from other ecoregions, with regime shifts identified in the early 1980s, early 2000s, and mid-2000s for spring communities. Regime shifts were identified in the early to mid-1990s for the NES, Georges Bank, and the Mid-Atlantic Bight ecoregions, while the fall communities experienced shifts in the early 1990s and late 1980s for the NES and Georges Bank, but in the late 1990s in the Mid-Atlantic Bight. A constrained correspondence analysis of zooplankton community against local and basin-scale climatological indices suggests that water temperature, stratification, and the Atlantic multidecadal oscillation (AMO) were the predominant factors in driving the zooplankton community composition.

  17. Selenium in San Francisco Bay zooplankton: Potential effects of hydrodynamics and food web interactions

    USGS Publications Warehouse

    Purkerson, D.G.; Doblin, M.A.; Bollens, S.M.; Luoma, S.N.; Cutter, G.A.

    2003-01-01

    The potential toxicity of elevated selenium (Se) concentrations in aquatic ecosystems has stimulated efforts to measure Se concentrations in benthos, nekton, and waterfowl in San Francisco Bay (SF Bay). In September 1998, we initiated a 14 mo field study to determine the concentration of Se in SF Bay zooplankton, which play a major role in the Bay food web, but which have not previously been studied with respect to Se. Monthly vertical plankton tows were collected at several stations throughout SF Bay, and zooplankton were separated into two operationally defined size classes for Se analyses: 73-2,000 ??m, and ???2,000 ??m. Selenium values ranged 1.02-6.07 ??g Se g-1 dry weight. No spatial differences in zooplankton Se concentrations were found. However, there were inter- and intra-annual differences. Zooplankton Se concentrations were enriched in the North Bay in Fall 1999 when compared to other seasons and locations within and outside SF Bay. The abundance and biovolume of the zooplankton community varied spatially between stations, but not seasonally within each station. Smaller herbivorous-omnivorous zooplankton had higher Se concentrations than larger omnivorous-carnivorous zooplankton. Selenium concentrations in zooplankton were negatively correlated with the proportion of total copepod biovolume comprising the large carnivorous copepod Tortanus dextrilobatus, but positively correlated with the proportion of copepod biovolume comprising smaller copepods of the family Oithonidae, suggesting an important role of trophic level and size in regulating zooplankton Se concentrations.

  18. Using occupancy modeling to compare traditional versus DNA metabarcoding methods for characterizing zooplankton biodiversity

    EPA Science Inventory

    DNA metabarcoding tools could increase our ability to detect changes in zooplankton communities and to detect invasive zooplankton taxa while they are still rare. Nonetheless, the use of DNA-metabarcoding for characterizing zooplankton biodiversity in the Great Lakes has not bee...

  19. Does salinity change determine zooplankton variability in the saline Qarun Lake (Egypt)?

    NASA Astrophysics Data System (ADS)

    El-Shabrawy, Gamal M.; Anufriieva, Elena V.; Germoush, Mousa O.; Goher, Mohamed E.; Shadrin, Nickolai V.

    2015-11-01

    Zooplankton and 14 abiotic variables were studied during August 2011 at 10 stations in Lake Qarun, Egypt. Stations with the lowest salinity and highest nutrient concentrations and turbidity were close to the discharge of waters from the El-Bats and El-Wadi drainage systems. A total of 15 holozooplankton species were identified. The salinity in Lake Qarun increased and fluctuated since 1901: 12 g/L in 1901; 8.5 g/L in 1905; 12.0 g/L in 1922; 30.0 g/L in 1985; 38.7 g/L in 1994; 35.3 g/L in 2006, and 33.4 g/L in 2011. The mean concentration of nutrients (nitrate, nitrite and orthophosphate) gradually increased from 35, 0.16 and 0.38 µg/L, respectively, in 1953-1955 to 113, 16.4, and 30.26 µg/L in 2011. From 1999-2003 some decrease of species diversity occurred. Average total zooplankton density was 30 000 ind./m3 in 1974-1977; 356 125 ind./m3 in 1989; 534 000 ind./m3 in 1994-1995; from 965 000 to 1 452 000 ind./m3 in 2006, and 595 000 ind./m3 in 2011. A range of long-term summer salinity variability during the last decades was very similar to a range of salinity spatial variability in summer 2011. There is no significant correlation between zooplankton abundance and salinity in spatial and long-term changes. We conclude that salinity fluctuations since at least 1955 did not directly drive the changes of composition and abundance of zooplankton in the lake. A marine community had formed in the lake, and it continues to change. One of the main drivers of this change is a regular introduction and a pressure of alien species on the existent community. Eutrophication also plays an important role. The introduction of Mnemiopsis leidyi, first reported in 2014, may lead to a start of a new stage of the biotic changes in Lake Qarun, when eutrophication and the population dynamics of this ctenophore will be main drivers of the ecosystem change.

  20. Seasonal variation of zooplankton abundance and community structure in Prince William Sound, Alaska, 2009-2016

    NASA Astrophysics Data System (ADS)

    McKinstry, Caitlin A. E.; Campbell, Robert W.

    2018-01-01

    Large calanoid copepods and other zooplankters comprise the prey field for ecologically and economically important predators such as juvenile pink salmon, herring, and seabirds in Prince William Sound (PWS).​ From 2009-2016, the Gulf Watch Alaska program collected zooplankton 5-10 times each year at 12 stations in PWS to establish annual patterns. Surveys collected 188 species of zooplankton with Oithona similis, Limacina helicina, Pseudocalanus spp., and Acartia longiremis as the most common species present in 519 samples. Generalized additive models assessed seasonal abundance and showed peak abundance in July (mean: 9826 no. m-3 [95% CI: 7990-12,084]) and lowest abundance in January (503 no. m-3 [373 to 678]). Significantly higher zooplankton abundance occurred in 2010 (542 no. m-3 ± 55 SE) and lowest in 2013 (149 no. m-3 ± 13). The species composition of communities, determined via hierarchical cluster analysis and indicator species analysis, produced six distinct communities based on season and location. The winter community, characterized by warm-water indicator species including Mesocalanus tenuicornis, Calanus pacificus, and Corycaeus anglicus, diverged into four communities throughout the spring and summer. The first spring community, characterized by copepods with affinities for lower salinities, occurred sound-wide. The second spring community, comprised of planktonic larvae, appeared sporadically in PWS bays in 2011-2013. Spring and summer open water stations were defined by the presence of large calanoid copepods. A summer community including the most abundant taxa was common in 2010 and 2011, absent in 2013, then sporadically appeared in 2014 and 2015 suggesting interannual variability of zooplankton assemblages. The zooplankton community shifted to a uniform assemblage characterized by cnidarians in the early autumn. Community assemblages showed significant correlations to a set of environmental variables including SST, mixed layer depth

  1. Determinants of community structure of zooplankton in heavily polluted river ecosystems

    NASA Astrophysics Data System (ADS)

    Xiong, Wei; Li, Jie; Chen, Yiyong; Shan, Baoqing; Wang, Weimin; Zhan, Aibin

    2016-02-01

    River ecosystems are among the most affected habitats globally by human activities, such as the release of chemical pollutants. However, it remains largely unknown how and to what extent many communities such as zooplankton are affected by these environmental stressors in river ecosystems. Here, we aim to determine major factors responsible for shaping community structure of zooplankton in heavily polluted river ecosystems. Specially, we use rotifers in the Haihe River Basin (HRB) in North China as a case study to test the hypothesis that species sorting (i.e. species are “filtered” by environmental factors and occur at environmental suitable sites) plays a key role in determining community structure at the basin level. Based on an analysis of 94 sites across the plain region of HRB, we found evidence that both local and regional factors could affect rotifer community structure. Interestingly, further analyses indicated that local factors played a more important role in determining community structure. Thus, our results support the species sorting hypothesis in highly polluted rivers, suggesting that local environmental constraints, such as environmental pollution caused by human activities, can be stronger than dispersal limitation caused by regional factors to shape local community structure of zooplankton at the basin level.

  2. Zooplankton time-series in the Balearic Sea (Western Mediterranean): Variability during the decade 1994 2003

    NASA Astrophysics Data System (ADS)

    Fernández de Puelles, Maria Luz; Alemany, Francisco; Jansá, Javier

    2007-08-01

    Studies of plankton time-series from the Balearic islands waters are presented for the past decade, with main emphasis on the variability of zooplankton and how it relates to the environment. The seasonal and interannual patterns of temperature, salinity, nutrients, chlorophyll concentration and zooplankton abundance are described with data obtained between 1994 and 2003. Samples were collected every 10 days at a monitoring station in the Mallorca channel, an area with marked hydrographic variability in the Western Mediterranean. Mesoscale variability was also assessed using data from monthly sampling survey carried out between 1994 and 1999 in a three station transect located in the same study area. The copepods were the most abundant group with three higher peaks (March, May and September) distinguished during the annual cycle and a clear coastal-offshore decreasing gradient. Analysis of the zooplankton community revealed two distinct periods: the mixing period during winter and early spring, where copepods, siphonophores and ostracods were most abundant and, the stratified period characterised by an increase of cladocerans and meroplankton abundances. Remarkable interannual zooplankton variability was observed in relation to hydrographic regime with higher abundances of main groups during cool years, when northern Mediterranean waters prevailed in the area. The warmer years showed the lowest zooplankton abundances, associated with the inflow of less saline and nutrient-depleted Atlantic Waters. Moreover, the correlation found between copepod abundance and large scale climatic factors (e.g., NAO) suggested that they act as main driver of the zooplankton variability. Therefore, the seasonal but particularly the interannual variation observed in plankton abundance and structure patterns of the Balearic Sea seems to be highly modulated by large-scale forcing and can be considered an ideal place where to investigate potential consequences of global climate change.

  3. Feeding and production of zooplankton in the Catalan Sea (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Saiz, Enric; Calbet, Albert; Atienza, Dacha; Alcaraz, Miquel

    2007-08-01

    Zooplankton are key components of the structure and functioning of marine planktonic food webs. They are the main link of planktonic primary production towards top pelagic consumer levels (fish), and play a relevant role on the nutrient recycling in the water column and on the export of particulate matter out of the photic zone. In this paper, we review the present knowledge on the feeding and production of zooplankton in the Catalan Sea (NW Mediterranean), with special emphasis on copepods. Feeding of zooplankton in the Catalan Sea appears typically food limited, with average daily rations on a yearly basis in the order of 48% body C d -1. Heterotrophic prey constitute a relevant fraction of their diet, as an alternative to the scarce phytoplankton in the area. From a structural point of view, the trophic impact and control of their prey populations are low on standing stocks but, at certain times, zooplankton can exert a meaningful effect on their prey production. Regarding zooplankton production, the available estimates of growth rates in the area are based on the egg production rate of copepods. Egg production rates appear to be limited, especially in summer. Tentative estimates of copepod production in the area are in the order of 20-40 mg C m -2 d -1. In conclusion, this review confirms that the oligotrophic character of the NW Mediterranean constrains the feeding activity and production of zooplankton.

  4. Seasonal cycles of zooplankton from San Francisco Bay

    USGS Publications Warehouse

    Ambler, Julie W.; Cloern, James E.; Hutchinson, Anne

    1985-01-01

    Seasonal cycles of zooplankton abundance appear to be constant among years (1978–1981) and are similar in the deep (>10 m) channels and lateral shoals (<3 m). The seasonal zooplankton community dynamics are discussed in relation to: (1) river discharge which alters salinity distribution and residence time of plankton; (2) temperature which induces production and hatching of dormant copepod eggs; (3) coastal hydrography which brings neritic copepods of different zoogeographic affinities into the bay; and (4) seasonal cycles of phytoplankton.

  5. PCR-Based Assessment of Freshwater Zooplankton Feeding on Edible and "Inedible" Prey In Situ.

    NASA Astrophysics Data System (ADS)

    Nejstgaard, J. C.; Belyaeva, M.; Van den Wyngaert, S.; Berger, S. A.; Grossart, H. P.; Kasprzak, P.

    2016-02-01

    Microbiota in pelagic ecosystems can affect zooplankton nutrition in several ways that are not readily assessable in situ, using classical approaches. In contrast to classical food web models identifying phytoplankton as the dominant food source for crustacean zooplankton, recent findings increasingly suggest that zooplankton may derive a significant part of the diet from a wide variety of taxa including ciliates, aquatic fungi, bacteria and small metazoan zooplankton (e.g. rotifers), in both marine and freshwaters. Direct quantification of soft-bodied and non-pigmented prey in zooplankton guts as well as symbionts and parasites on the prey and zooplankton itself has so far been impeded by the lack of appropriate methodology. We aim to establish molecular approaches to quantify these yet-understudied interactions in lake food webs. As a first step we have validated the qPCR detection method in laboratory experiments with cladoceran, calanoid and cyclopoid predators and algal prey species (Cryptomonas sp.). We plan to apply the method to study the dietary contribution of aquatic fungi - chytrids, which are parasites on inedible phytoplankton species, thus aiming to provide insights into the Mycoloop - energy transfer from inedible phytoplankton to zooplankton via fungal parasites. The quantitative PCR method, when validated for key zooplankton species and specific prey or parasite groups, has a potential for a broad range of applications in food web research.

  6. Effects of increased zooplankton biomass on phytoplankton and cyanotoxins: A tropical mesocosm study.

    PubMed

    Dos Santos Severiano, Juliana; Dos Santos Almeida-Melo, Viviane Lúcia; Bittencourt-Oliveira, Maria do Carmo; Chia, Mathias Ahii; do Nascimento Moura, Ariadne

    2018-01-01

    Zooplankton are important biocontrol agents for algal blooms in temperate lakes, while their potential in tropical and subtropical environments is not well understood. The aim of the present study was to evaluate the influence of increased zooplankton biomass on phytoplankton community and cyanotoxins (microcystins and saxitoxin) content of a tropical reservoir (Ipojuca reservoir, Brazil) using in situ mesocosms. Mesocosms consisted of 50L transparent polyethylene bags suspended in the reservoir for twelve days. Phytoplankton populations were exposed to treatments having 1 (control), 2, 3 and 4 times the biomass of zooplankton found in the reservoir at the beginning of the experiment. Filamentous cyanobacteria such as Planktothrix agardhii and Cylindrospermopsis raciborskii were not negatively influenced by increasing zooplankton biomass. In contrast, the treatments with 3 and 4 times zooplankton biomass negatively affected the cyanobacteria Aphanocapsa sp., Chroococcus sp., Dolichospermum sp., Merismopedia tenuissima, Microcystis aeruginosa and Pseudanabaena sp.; the diatom Cyclotella meneghiniana; and the cryptophyte Cryptomonas sp. Total microcystin concentration both increased and decreased at different times depending on zooplankton treatment, while saxitoxin level was not significantly different between the treatments and control. The results of the present study suggest that zooplankton biomass can be manipulated to control the excessive proliferation of non-filamentous bloom forming cyanobacteria (e.g. M. aeruginosa) and their associated cyanotoxins. Copyright © 2017 Elsevier B.V. All rights reserved.

  7. Bottom-up linkages between primary production, zooplankton, and fish in a shallow, hypereutrophic lake.

    PubMed

    Matsuzaki, Shin-Ichiro S; Suzuki, Kenta; Kadoya, Taku; Nakagawa, Megumi; Takamura, Noriko

    2018-06-09

    Nutrient supply is a key bottom-up control of phytoplankton primary production in lake ecosystems. Top-down control via grazing pressure by zooplankton also constrains primary production, and primary production may simultaneously affect zooplankton. Few studies have addressed these bidirectional interactions. We used convergent cross-mapping (CCM), a numerical test of causal associations, to quantify the presence and direction of the causal relationships among environmental variables (light availability, surface water temperature, NO 3 -N, and PO 4 -P), phytoplankton community composition, primary production, and the abundances of five functional zooplankton groups (large-cladocerans, small-cladocerans, rotifers, calanoids, and cyclopoids) in Lake Kasumigaura, a shallow, hypereutrophic lake in Japan. CCM suggested that primary production was causally influenced by NO 3 -N and phytoplankton community composition; there was no detectable evidence of a causal effect of zooplankton on primary production. Our results also suggest that rotifers and cyclopoids were forced by primary production, and cyclopoids were further influenced by rotifers. However, our CCM suggested that primary production was weakly influenced by rotifers (i.e., bidirectional interaction). These findings may suggest complex linkages between nutrients, primary production, and rotifers and cyclopoids, a pattern that has not been previously detected or has been neglected. We used linear regression analysis to examine the relationships between the zooplankton community and pond smelt (Hypomesus nipponensis), the most abundant planktivore and the most important commercial fish species in Lake Kasumigaura. The relative abundance of pond smelt was significantly and positively correlated with the abundances of rotifers and cyclopoids, which were causally influenced by primary production. This finding suggests that bottom-up linkages between nutrient, primary production, and zooplankton abundance might be a

  8. Spatial variations in zooplankton community structure along the Japanese coastline in the Japan Sea: influence of the coastal current

    NASA Astrophysics Data System (ADS)

    Kodama, Taketoshi; Wagawa, Taku; Iguchi, Naoki; Takada, Yoshitake; Takahashi, Takashi; Fukudome, Ken-Ichi; Morimoto, Haruyuki; Goto, Tsuneo

    2018-06-01

    This study evaluates spatial variations in zooplankton community structure and potential controlling factors along the Japanese coast under the influence of the coastal branch of the Tsushima Warm Current (CBTWC). Variations in the density of morphologically identified zooplankton in the surface layer in May were investigated for a 15-year period. The density of zooplankton (individuals per cubic meter) varied between sampling stations, but there was no consistent west-east trend. Instead, there were different zooplankton community structures in the west and east, with that in Toyama Bay particularly distinct: Corycaeus affinis and Calanus sinicus were dominant in the west and Oithona atlantica was dominant in Toyama Bay. Distance-based redundancy analysis (db-RDA) was used to characterize the variation in zooplankton community structure, and four axes (RD1-4) provided significant explanation. RD2-4 only explained < 4.8 % of variation in the zooplankton community and did not show significant spatial difference; however, RD1, which explained 89.9 % of variation, did vary spatially. Positive and negative species scores on RD1 represent warm- and cold-water species, respectively, and their variation was mainly explained by water column mean temperature, and it is considered to vary spatially with the CBTWC. The CBTWC intrusion to the cold Toyama Bay is weak and occasional due to the submarine canyon structure of the bay. Therefore, the varying bathymetric characteristics along the Japanese coast of the Japan Sea generate the spatial variation in zooplankton community structure, and dominance of warm-water species can be considered an indicator of the CBTWC.

  9. Zooplankton variability in the subtropical estuarine system of Paranaguá Bay, Brazil, in 2012 and 2013

    NASA Astrophysics Data System (ADS)

    Salvador, Bianca; Bersano, José Guilherme F.

    2017-12-01

    Spatial and temporal dynamics of zooplankton assemblages were studied in the Paranaguá Estuarine System (southern Brazil), including data from the summer (rainy) and winter (dry) periods of 2012 and 2013. Zooplankton and environmental data were collected at 37 stations along the estuary and examined by multivariate methods. The results indicated significantly distinct assemblages; differences in abundance were the major source of variability, mainly over the temporal scale. The highest abundances were observed during rainy periods, especially in 2012, when the mean density reached 16378 ind.m-3. Winter assemblages showed lower densities but higher species diversity, due to the more extensive intrusion of coastal waters. Of the 14 taxonomic groups recorded, Copepoda was the most abundant and diverse (92% of total abundance and 22 species identified). The coastal copepods Acartia lilljeborgi (44%) and Oithona hebes (26%) were the most important species in both abundance and frequency, followed by the estuarine Pseudodiaptomus acutus and the neritic Temora turbinata. The results indicated strong influences of environmental parameters on the community structure, especially in response to seasonal variations. The spatial distribution of species was probably determined mainly by their preferences and tolerances for specific salinity conditions. On the other hand, the abundances were strongly related to higher water temperature and precipitation rates, which can drive nutrient inputs and consequently food supply in the system, due to intense continental drainage.

  10. Temporal and spatial variability of zooplankton on the Faroe shelf in spring 1997-2016

    NASA Astrophysics Data System (ADS)

    Jacobsen, Sólvá; Gaard, Eilif; Larsen, Karin Margretha Húsgarð; Eliasen, Sólvá Káradóttir; Hátún, Hjálmar

    2018-01-01

    Zooplankton availability during spring and summer determines the growth and survival of first-feeding fish larvae, and thus impacts the recruitment to both fish prey species and commercial fish stocks. On the Faroe shelf, however, the relative importance of oceanic versus neritic zooplankton species has hitherto not been well understood. In this study, spatio-temporal variability in zooplankton community structure and size spectra on the Faroe shelf is investigated using observations from late April during the period 1997-2016. The main objective was to explore which environmental variables influence the zooplankton community structure in early spring. The zooplankton community in the permanently well mixed central shelf inside the tidal front consists of a mixture of neritic, cosmopolitan and oceanic species. In this region, redundancy analyses showed that chlorophyll concentration had a positive effect on abundance of neritic copepods and meroplankton as well as all zooplankton < 1.2 mm. The abundance variability of these species shows increased production around 2000 and 2008-2009. The highest zooplankton abundance, mainly consisting of Calanus finmarchicus, is however observed off-shore from the tidal front, especially on the western side of the Faroe Plateau. A shift in C. finmarchicus phenology occurred around 2007, resulting in earlier reproduction of this species, and this variability could not be explained by the employed regional environmental parameters. Our results indicate that the Faroe shelf biological production is more dependent on the local primary production and neritic zooplankton species than on the large oceanic C. finmarchicus stock.

  11. Effects of Climate on the Zooplankton of the California Current

    NASA Astrophysics Data System (ADS)

    Lavaniegos, B. E.

    2007-05-01

    Almost six decades of sampling of the California Current system, carried out by the CalCOFI program (California Cooperative Fisheries Investigation) complemented by a decade of observations from the IMECOCAL program (Investigaciones Mexicanas de la Corriente de California), have revealed changing patterns in zooplankton abundances, species composition, and distributions over interannual through multidecadal time scales. Interannual changes associated with ENSO variability are manifested as strong but transitory perturbations in the mean annual cycle in seasonal abundances (and distributions) of particular species. An investigation of longer- term change, limited to the region off southern California, shows a persistent decline in zooplankton volumes (a proxy for overall biomass of macrozooplankton) between 1977 and 1998 that is considered to be a response to the well documented shift in basin-scale climate forcing that occurred in 1976-77. Further examination of this decline in zooplankton volumes indicates that it was due principally to the disappearance of several salp species after 1977. Other species and functional groups did not decline after the change in climate regime, while some species have followed persistent secular trends that appear to be associated more with the phenomenon of long-term global warming. Differences in the regional responses to climate change throughout the California Current system have also been observed recently in the spatial distribution of zooplankton biomass and changes in latitudinal ranges of certain species. For example, zooplankton biomass in the Baja California region show typical values for the 1997-98 El Niño that were followed by a decrease during the sharp transition to the cool La Niña conditions in 1999. This contrasts with the nearby region off southern California that was characterized by reduced biomass during the El Niño period and the subsequent recovery during the La Niña. Another regional contrast in

  12. Can small zooplankton enhance turbulence in a lake during vertical migration?

    NASA Astrophysics Data System (ADS)

    Wain, D.; Simoncelli, S.; Thackeray, S.

    2016-02-01

    Recent research in both oceanic and freshwater systems suggests that the Diel Vertical Migration (DVM), a predator-avoidance mechanism adopted by many zooplankton, may be an underrepresented source of turbulence and mixing. In particular, the migration can play a crucial role when organisms cross the thermocline; this could be particularly important in enhancing the mixing in lakes, where the pelagic zone is often quiescent, with a consequent impact on lake ecosystem functioning. A field experiment was performed to directly measure the temperature fluctuations and kinetic energy dissipation rate generated by DVM of Daphnia spp., a 1 mm crustacean zooplankton genus. Profiles of turbulence were acquired with a temperature microstructure profiler in Vobster Quay (UK), a small quarry with small wind fetch, steep sides, and with a maximum depth of approximately 25 m. Sixteen profiles were measured over the course of two hours during sunset on 16 July 2015, during which there was no wind. Backscatter strength from bottom-mounted ADCP was used as a proxy to assess DVM. Zooplankton vertical distribution was also quantified by sampling with a 100 μm mesh net before and after the turbulence profiling in 8 layers to verify the distribution of Daphnia spp. before and after the migration. Zooplankton tows show higher abundance (450 ind./L) of Daphnia at 9m and near the bottom before sunset (8PM). Samples after dusk (11.20PM) showed an increase in the surface layer, from 0 up to 250 ind./L. However, migration also appears to happen horizontally. Ensemble-averaged profiles show a great variation of the dissipation rates over the course of the time series with a peak of 10-7 W/kg between 6m and 12m where the DVM is happening and with respect to profiles before sunset. Given the uncertainty in measuring the length scales of turbulence associated with small zooplankton, further analysis is required to determine if the observed turbulence during the time of migration was due the

  13. Dissolved and fecal pellet carbon and nitrogen release by zooplankton in tropical waters

    NASA Astrophysics Data System (ADS)

    Small, Lawrence F.; Fowler, Scott W.; Moore, Stanley A.; LaRosa, Jacques

    1983-12-01

    Carbon (C) and nitrogen (N) release by tropical zooplankton (mostly copepods) and micronekton (euphausiids, pelagic red crabs, and salps) was investigated near VERTEX particle traps at 18°N, 108°W (in 1981) and 15°40'N, 107°30'W (in 1982). The objective was to assess the significance of fecal pellet release relative to respiratory and dissolved excretory release of C and N and relative to primary production in the same waters. For small (< 300 μm) and large (300 to 500 μm) zooplankton, 38 to 49% more ammonium-nitrogen was excreted than C was respired, relative to body concentrations of N and C, respectively. However, for the same zooplankton, 40 to 54% less fecal N was egested than fecal C, again relative to body C and N contents. This apparent compensation yielded a relatively constant body C:N ratio, and, because of the relatively low ratio of respiratory C to excretory N, implied a protein-based metabolism. The same compensatory relationships were found for euphausiids and red crabs, except the percentages of C and N losses were lower than for the zooplankton. No such compensatory relationship was found for the salps, using respiratory—excretory data from the literature and our own observations of fecal pellet production. Either the literature data were not applicable to our salps, or the salps had a more lipid-based metabolism. Reasonably balanced C and N loss budgets were computed for the small and large zooplankton. Daily fecal pellet C egestion represented only 2 to 3% of both large and small zooplankton body C content, and daily fecal pellet N egestion was <2% of zooplankton body N. Likewise, daily fecal pellet production by small and large zooplankton together accounted for <2% of the daily primary C and N production in the top 100 m of water; that is, 'new' primary production would have had to replace losses of <2% per day to balance fecal pellet losses from large and small zooplankton, presuming all fecal pellets sank below 100 m without being

  14. Seasonal variations of zooplankton biomass and size-fractionated abundance in relation to environmental changes in a tropical mangrove estuary in the Straits of Malacca.

    PubMed

    Balqis, A R S; Yusoff, F M; Arshad, A; Nishikawa, J

    2016-07-01

    Seasonal variations of zooplankton community in terms of biomass and size-fractionated densities were studied in a tropical Sangga Kechil river, Matang, Perak from June 2010 to April 2011. Zooplankton and jellyfish (hydromedusae, siphonophores and ctenophores) samples were collected bimonthly from four sampling stations by horizontal towing of a 140-?m plankton net and 500 ?m bongo net, respectively. A total of 12 zooplankton groups consisting of six groups each of mesozooplankon (0.2 mm-2.0 mm) and macrozooplankton (2.0 mm-20.0 cm) were recorded. The total zooplankton density (12375?3339 ind m(-3)) and biomass (35.32?14.56 mg m(-3)) were highest during the northeast (NE) monsoon and southwest (SW) monsoon, respectively, indicating the presence of bigger individuals in the latter season. Mesozooplankton predominated (94%) over the macrozooplankton (6%) during all the seasons, and copepods contributed 84% of the total mesozooplankton abundance. Macrozooplankton was dominated by appendicularians during most of the seasons (43%-97%), except during the NE monsoon (December) when chaetognaths became the most abundant (89% of the total macrozooplankton). BIO-ENV analysis showed that total zooplankton density was correlated with turbidity, total nitrogen and total phosphorus, which in turn was positively correlated to chlorophyll a. Cluster analysis of the zooplankton community showed no significant temporal difference between the SW and NE monsoon season during the study period (> 90% similarity). The present study revealed that the zooplankton community in the tropical mangrove estuary in the Straits of Malacca was dominated by mesoplankton, especially copepods.

  15. Planktivory in the changing Lake Huron zooplankton community: Bythotrephes consumption exceeds that of Mysis and fish

    USGS Publications Warehouse

    Bunnell, D.B.; Hunter, R. Douglas; Warner, D.M.; Chriscinske, M.A.; Roseman, E.F.

    2011-01-01

    Oligotrophic lakes are generally dominated by calanoid copepods because of their competitive advantage over cladocerans at low prey densities. Planktivory also can alter zooplankton community structure. We sought to understand the role of planktivory in driving recent changes to the zooplankton community of Lake Huron, a large oligotrophic lake on the border of Canada and the United States. We tested the hypothesis that excessive predation by fish (rainbow smelt Osmerus mordax, bloater Coregonus hoyi) and invertebrates (Mysis relicta, Bythotrephes longimanus) had driven observed declines in cladoceran and cyclopoid copepod biomass between 2002 and 2007. We used a field sampling and bioenergetics modelling approach to generate estimates of daily consumption by planktivores at two 91-m depth sites in northern Lake Huron, U.S.A., for each month, May-October 2007. Daily consumption was compared to daily zooplankton production. Bythotrephes was the dominant planktivore and estimated to have eaten 78% of all zooplankton consumed. Bythotrephes consumption exceeded total zooplankton production between July and October. Mysis consumed 19% of all the zooplankton consumed and exceeded zooplankton production in October. Consumption by fish was relatively unimportant - eating only 3% of all zooplankton consumed. Because Bythotrephes was so important, we explored other consumption estimation methods that predict lower Bythotrephes consumption. Under this scenario, Mysis was the most important planktivore, and Bythotrephes consumption exceeded zooplankton production only in August. Our results provide no support for the hypothesis that excessive fish consumption directly contributed to the decline of cladocerans and cyclopoid copepods in Lake Huron. Rather, they highlight the importance of invertebrate planktivores in structuring zooplankton communities, especially for those foods webs that have both Bythotrephes and Mysis. Together, these species occupy the epi-, meta- and

  16. Lake Ontario zooplankton in 2003 and 2008: Community changes and vertical redistribution

    USGS Publications Warehouse

    Rudstam, Lars G.; Holeck, Kristen T.; Bowen, Kelly L.; Watkins, James M.; Weidel, Brian C.; Luckey, Frederick J.

    2014-01-01

    Lake-wide zooplankton surveys are critical for documenting and understanding food web responses to ecosystem change. Surveys in 2003 and 2008 during the binational intensive field year in Lake Ontario found that offshore epilimnetic crustacean zooplankton declined by a factor of 12 (density) and factor of 5 (biomass) in the summer with smaller declines in the fall. These declines coincided with an increase in abundance of Bythotrephes and are likely the result of direct predation by, or behavioral responses to this invasive invertebrate predator. Whole water column zooplankton density also declined from 2003 to 2008 in the summer and fall (factor of 4), but biomass only declined in the fall (factor of 2). The decline in biomass was less than the decline in density because the average size of individual zooplankton increased. This was due to changes in the zooplankton community composition from a cyclopoid/bosminid dominated community in 2003 to a calanoid dominated community in 2008. The increase in calanoid copepods was primarily due to the larger species Limnocalanus macrurus and Leptodiaptomus sicilis. These cold water species were found in and below the thermocline associated with a deep chlorophyll layer. In 2008, most of the zooplankton biomass resided in or below the thermocline during the day. Increased importance of copepods in deeper, colder water may favor Cisco and Rainbow Smelt over Alewife because these species are better adapted to cold temperatures than Alewife.

  17. Persistence of an unusual pelagic zooplankton assemblage in a clear, mountain lake

    USGS Publications Warehouse

    Larson, G.L.; Hoffman, R.L.; C. David, McIntire

    2002-01-01

    The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988-1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

  18. Persistence of an unusual pelagic zooplankton assemblage in a clear mountain lake

    USGS Publications Warehouse

    Larson, Gary L.; Hoffman, Robert L.; McIntire, C.D.

    2002-01-01

    The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988a??1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

  19. Zooplankton fecal pellets, marine snow, phytodetritus and the ocean's biological pump

    NASA Astrophysics Data System (ADS)

    Turner, Jefferson T.

    2015-01-01

    The 'biological pump' is the process by which photosynthetically-produced organic matter in the ocean descends from the surface layer to depth by a combination of sinking particles, advection or vertical mixing of dissolved organic matter, and transport by animals. Particulate organic matter that is exported downward from the euphotic zone is composed of combinations of fecal pellets from zooplankton and fish, organic aggregates known as 'marine snow' and phytodetritus from sinking phytoplankton. Previous reviews by Turner and Ferrante (1979) and Turner (2002) focused on publications that appeared through late 2001. Since that time, studies of the biological pump have continued, and there have been >300 papers on vertical export flux using sediment traps, large-volume filtration systems and other techniques from throughout the global ocean. This review will focus primarily on recent studies that have appeared since 2001. Major topics covered in this review are (1) an overview of the biological pump, and its efficiency and variability, and the role of dissolved organic carbon in the biological pump; (2) zooplankton fecal pellets, including the contribution of zooplankton fecal pellets to export flux, epipelagic retention of zooplankton fecal pellets due to zooplankton activities, zooplankton vertical migration and fecal pellet repackaging, microbial ecology of fecal pellets, sinking velocities of fecal pellets and aggregates, ballasting of sinking particles by mineral contents, phytoplankton cysts, intact cells and harmful algae toxins in fecal pellets, importance of fecal pellets from various types of zooplankton, and the role of zooplankton fecal pellets in picoplankton export; (3) marine snow, including the origins, abundance, and distributions of marine snow, particles and organisms associated with marine snow, consumption and fragmentation of marine snow by animals, pathogens associated with marine snow; (4) phytodetritus, including pulsed export of

  20. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April-June 1998. II. . Zooplankton abundance and size-fractionated community composition

    NASA Astrophysics Data System (ADS)

    Turner, Jefferson T.; Doucette, Gregory J.; Keafer, Bruce A.; Anderson, Donald M.

    2005-09-01

    During spring blooms of the toxic dinoflagellate Alexandrium fundyense in Casco Bay, Maine in 1998, we investigated vectorial intoxication of various zooplankton size fractions with PSP toxins, including zooplankton community composition from quantitative zooplankton samples (>102 μm), as well as zooplankton composition in relation to toxin levels in various size fractions (20-64, 64-100, 100-200, 200-500, >500 μm). Zooplankton abundance in 102 μm mesh samples was low (most values<10,000 animals m -3) from early April through early May, but increased to maxima in mid-June (cruise mean=121,500 animals m -3). Quantitative zooplankton samples (>102 μm) were dominated by copepod nauplii, and Oithona similis copepodites and adults at most locations except for those furthest inshore. At these inshore locations, Acartia hudsonica copepodites and adults were usually dominant. Larger copepods such as Calanus finmarchicus, Centropages typicus, and Pseudocalanus spp. were found primarily offshore, and at much lower abundances than O. similis. Rotifers, mainly present from late April to late May, were most abundant inshore. The marine cladoceran Evadne nordmani was sporadically abundant, particularly in mid-June. Microplankton in 20-64 μm size fractions was generally dominated by A. fundyense, non-toxic dinoflagellates, and tintinnids. Microplankton in 64-100 μm size fractions was generally dominated by larger non-toxic dinoflagellates, tintinnids, aloricate ciliates, and copepod nauplii, and in early May, rotifers. Some samples (23%) in the 64-100 μm size fractions contained abundant cells of A. fundyense, presumably due to sieve clogging, but most did not contain A. fundyense cells. This suggests that PSP toxin levels in those samples were due to vectorial intoxication of microzooplankters such as heterotrophic dinoflagellates, tintinnids, aloricate ciliates, rotifers, and copepod nauplii via feeding on A. fundyense cells. Dominant taxa in zooplankton fractions varied

  1. [Effects of large bio-manipulation fish pen on community structure of crustacean zooplankton in Meiliang Bay of Taihu Lake].

    PubMed

    Ke, Zhi-Xin; Xie, Ping; Guo, Long-Gen; Xu, Jun; Zhou, Qiong

    2012-08-01

    In 2005, a large bio-manipulation pen with the stock of silver carp and bighead carp was built to control the cyanobacterial bloom in Meiliang Bay of Taihu Lake. This paper investigated the seasonal variation of the community structure of crustacean zooplankton and the water quality within and outside the pen. There were no significant differences in the environmental parameters and phytoplankton biomass within and outside the pen. The species composition and seasonal dynamics of crustacean zooplankton within and outside the pen were similar, but the biomass of crustacean zooplankton was greatly suppressed by silver carp and bighead carp. The total crustacean zooplankton biomass and cladocerans biomass were significantly lower in the pen (P < 0.05). In general, silver carp and bighead carp exerted more pressure on cladoceran species than on copepod species. A distinct seasonal succession of crustacean zooplankton was observed in the Bay. Many crustacean species were only dominated in given seasons. Large-sized crustacean (mainly Daphnia sp. and Cyclops vicnus) dominated in winter and spring, while small-sized species (mainly Bosmina sp., Ceriodaphnia cornuta, and Limnoithona sinensis) dominated in summer and autumn. Canonical correspondence analysis showed that water transparency, temperature, and phytoplankton biomass were the most important factors affecting the seasonal succession of the crustacean.

  2. High mortality of Red Sea zooplankton under ambient solar radiation.

    PubMed

    Al-Aidaroos, Ali M; El-Sherbiny, Mohsen M O; Satheesh, Sathianeson; Mantha, Gopikrishna; Agustī, Susana; Carreja, Beatriz; Duarte, Carlos M

    2014-01-01

    High solar radiation along with extreme transparency leads to high penetration of solar radiation in the Red Sea, potentially harmful to biota inhabiting the upper water column, including zooplankton. Here we show, based on experimental assessments of solar radiation dose-mortality curves on eight common taxa, the mortality of zooplankton in the oligotrophic waters of the Red Sea to increase steeply with ambient levels of solar radiation in the Red Sea. Responses curves linking solar radiation doses with zooplankton mortality were evaluated by exposing organisms, enclosed in quartz bottles, allowing all the wavelengths of solar radiation to penetrate, to five different levels of ambient solar radiation (100%, 21.6%, 7.2%, 3.2% and 0% of solar radiation). The maximum mortality rates under ambient solar radiation levels averaged (±standard error of the mean, SEM) 18.4±5.8% h(-1), five-fold greater than the average mortality in the dark for the eight taxa tested. The UV-B radiation required for mortality rates to reach ½ of maximum values averaged (±SEM) 12±5.6 h(-1)% of incident UVB radiation, equivalent to the UV-B dose at 19.2±2.7 m depth in open coastal Red Sea waters. These results confirm that Red Sea zooplankton are highly vulnerable to ambient solar radiation, as a consequence of the combination of high incident radiation and high water transparency allowing deep penetration of damaging UV-B radiation. These results provide evidence of the significance of ambient solar radiation levels as a stressor of marine zooplankton communities in tropical, oligotrophic waters. Because the oligotrophic ocean extends across 70% of the ocean surface, solar radiation can be a globally-significant stressor for the ocean ecosystem, by constraining zooplankton use of the upper levels of the water column and, therefore, the efficiency of food transfer up the food web in the oligotrophic ocean.

  3. Hydroacoustic estimation of zooplankton biomass at two shoal complexes in the Apostle Islands Region of Lake Superior

    USGS Publications Warehouse

    Holbrook, B.V.; Hrabik, T.R.; Branstrator, D.K.; Yule, D.L.; Stockwell, J.D.

    2006-01-01

    Hydroacoustics can be used to assess zooplankton populations, however, backscatter must be scaled to be biologically meaningful. In this study, we used a general model to correlate site-specific hydroacoustic backscatter with zooplankton dry weight biomass estimated from net tows. The relationship between zooplankton dry weight and backscatter was significant (p < 0.001) and explained 76% of the variability in the dry weight data. We applied this regression to hydroacoustic data collected monthly in 2003 and 2004 at two shoals in the Apostle Island Region of Lake Superior. After applying the regression model to convert hydroacoustic backscatter to zooplankton dry weight biomass, we used geostatistics to analyze the mean and variance, and ordinary kriging to create spatial zooplankton distribution maps. The mean zooplankton dry weight biomass estimates from plankton net tows and hydroacoustics were not significantly different (p = 0.19) but the hydroacoustic data had a significantly lower coefficient of variation (p < 0.001). The maps of zooplankton distribution illustrated spatial trends in zooplankton dry weight biomass that were not discernable from the overall means.

  4. Isolation mediates persistent founder effects on zooplankton colonisation in new temporary ponds

    PubMed Central

    Badosa, Anna; Frisch, Dagmar; Green, Andy J.; Rico, Ciro; Gómez, Africa

    2017-01-01

    Understanding the colonisation process in zooplankton is crucial for successful restoration of aquatic ecosystems. Here, we analyzed the clonal and genetic structure of the cyclical parthenogenetic rotifer Brachionus plicatilis by following populations established in new temporary ponds during the first three hydroperiods. Rotifer populations established rapidly after first flooding, although colonisation was ongoing throughout the study. Multilocus genotypes from 7 microsatellite loci suggested that most populations (10 of 14) were founded by few clones. The exception was one of the four populations that persisted throughout the studied hydroperiods, where high genetic diversity in the first hydroperiod suggested colonisation from a historical egg bank, and no increase in allelic diversity was detected with time. In contrast, in another of these four populations, we observed a progressive increase of allelic diversity. This population became less differentiated from the other populations suggesting effective gene flow soon after its foundation. Allelic diversity and richness remained low in the remaining two, more isolated, populations, suggesting little gene flow. Our results highlight the complexity of colonisation dynamics, with evidence for persistent founder effects in some ponds, but not in others, and with early immigration both from external source populations, and from residual, historical diapausing egg banks. PMID:28276459

  5. Isolation mediates persistent founder effects on zooplankton colonisation in new temporary ponds

    NASA Astrophysics Data System (ADS)

    Badosa, Anna; Frisch, Dagmar; Green, Andy J.; Rico, Ciro; Gómez, Africa

    2017-03-01

    Understanding the colonisation process in zooplankton is crucial for successful restoration of aquatic ecosystems. Here, we analyzed the clonal and genetic structure of the cyclical parthenogenetic rotifer Brachionus plicatilis by following populations established in new temporary ponds during the first three hydroperiods. Rotifer populations established rapidly after first flooding, although colonisation was ongoing throughout the study. Multilocus genotypes from 7 microsatellite loci suggested that most populations (10 of 14) were founded by few clones. The exception was one of the four populations that persisted throughout the studied hydroperiods, where high genetic diversity in the first hydroperiod suggested colonisation from a historical egg bank, and no increase in allelic diversity was detected with time. In contrast, in another of these four populations, we observed a progressive increase of allelic diversity. This population became less differentiated from the other populations suggesting effective gene flow soon after its foundation. Allelic diversity and richness remained low in the remaining two, more isolated, populations, suggesting little gene flow. Our results highlight the complexity of colonisation dynamics, with evidence for persistent founder effects in some ponds, but not in others, and with early immigration both from external source populations, and from residual, historical diapausing egg banks.

  6. Ingestion of microplastics by natural zooplankton groups in the northern South China Sea.

    PubMed

    Sun, Xiaoxia; Li, Qingjie; Zhu, Mingliang; Liang, Junhua; Zheng, Shan; Zhao, Yongfang

    2017-02-15

    The ingestion of microplastics by five natural zooplankton groups in the northern South China Sea was studied for the first time and two types of sampling nets (505μm and 160μm in mesh size) were compared. The microplastics were detected in zooplankton sampled from 16 stations, with the fibrous microplastics accounting for the largest proportion (70%). The main component of the found microplastics was polyester. The average length of the microplastics was 125μm and 167μm for Nets I and II, respectively. The encounter rates of microplastics/zooplankton increased with trophic levels. The average encounter rate of microplastics/zooplankton was 5%, 15%, 34%, 49%, and 120% for Net I, and 8%, 21%, 47%, 60%, and 143% for Net II for copepods, chaetognaths, jellyfish, shrimp, and fish larvae, respectively. The average abundance of microplastics that were ingested by zooplankton was 4.1pieces/m 3 for Net I and 131.5pieces/m 3 for Net II. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Trophic ecology and vertical patterns of carbon and nitrogen stable isotopes in zooplankton from oxygen minimum zone regions

    NASA Astrophysics Data System (ADS)

    Williams, Rebecca L.; Wakeham, Stuart; McKinney, Rick; Wishner, Karen F.

    2014-08-01

    The unique physical and biogeochemical characteristics of oxygen minimum zones (OMZs) influence plankton ecology, including zooplankton trophic webs. Using carbon and nitrogen stable isotopes, this study examined zooplankton trophic webs in the Eastern Tropical North Pacific (ETNP) OMZ. δ13C values were used to indicate zooplankton food sources, and δ15N values were used to indicate zooplankton trophic position and nitrogen cycle pathways. Vertically stratified MOCNESS net tows collected zooplankton from 0 to 1000 m at two stations along a north-south transect in the ETNP during 2007 and 2008, the Tehuantepec Bowl and the Costa Rica Dome. Zooplankton samples were separated into four size fractions for stable isotope analyses. Particulate organic matter (POM), assumed to represent a primary food source for zooplankton, was collected with McLane large volume in situ pumps. The isotopic composition and trophic ecology of the ETNP zooplankton community had distinct spatial and vertical patterns influenced by OMZ structure. The most pronounced vertical isotope gradients occurred near the upper and lower OMZ oxyclines. Material with lower δ13C values was apparently produced in the upper oxycline, possibly by chemoautotrophic microbes, and was subsequently consumed by zooplankton. Between-station differences in δ15N values suggested that different nitrogen cycle processes were dominant at the two locations, which influenced the isotopic characteristics of the zooplankton community. A strong depth gradient in zooplankton δ15N values in the lower oxycline suggested an increase in trophic cycling just below the core of the OMZ. Shallow POM (0-110 m) was likely the most important food source for mixed layer, upper oxycline, and OMZ core zooplankton, while deep POM was an important food source for most lower oxycline zooplankton (except for samples dominated by the seasonally migrating copepod Eucalanus inermis). There was no consistent isotopic progression among the four

  8. PHYTOPLANKTON AND ZOOPLANKTON SEASONAL DYNAMICS IN A SUBTROPICAL ESTUARY: IMPORTANCE OF CYANOBACTERIA

    EPA Science Inventory

    Murrell, Michael C. and Emile M. Lores. 2004. Phytoplankton and Zooplankton Seasonal Dynamics in a Subtropical Estuary: Importance of Cyanobacteria. J. Plankton Res. 26(3):371-382. (ERL,GB 1190).

    A seasonal study of phytoplankton and zooplankton was conducted from 1999-20...

  9. A compilation of quantitative functional traits for marine and freshwater crustacean zooplankton.

    PubMed

    Hébert, Marie-Pier; Beisner, Beatrix E; Maranger, Roxane

    2016-04-01

    This data compilation synthesizes 8609 individual observations and ranges of 13 traits from 201 freshwater and 191 marine crustacean taxa belonging to either Copepoda or Cladocera, two important zooplankton groups across all major aquatic habitats. Most data were gathered from the literature, with the balance being provided by zooplankton ecologists. With the aim of more fully assessing zooplankton effects on elemental processes such as nitrogen (N), phosphorus (P) and carbon (C) stocks and fluxes in aquatic ecosystems, this data set provides information on the following traits: body size (length and mass), trophic group, elemental and biochemical corporal composition (N, P, C, lipid and protein content), respiration rates, N- and P-excretion rates, as well as stoichiometric ratios. Although relationships for zooplankton metabolism as a function of body mass or requirements have been explored in the past three decades, data have not been systematically compiled nor examined from an integrative and large-scale perspective across crustacean taxa and habitat types. While this contribution likely represents the most comprehensive assembly of traits for both marine and freshwater species, this data set is not exhaustive either. As a result, this compilation also identifies knowledge gaps: a fact that should encourage researchers to disclose information they may have to help complete such databases. This trait matrix is made available for the first time in this data paper; prior to its release, the data set has been analyzed in a meta-analysis published as a companion paper. This data set should prove extremely valuable for aquatic ecologists for trait-based characterization of plankton community structure as well as biogeochemical modeling. These data are also well-suited for deriving shortcut relationships that predict more difficult to measure trait values, most of which can be directly related to ecosystem properties (i.e., effect traits), from simpler traits (e

  10. Determine Age-structure of Gelatinous Zooplankton Using Optical Coherence Tomography

    NASA Astrophysics Data System (ADS)

    Bi, H.; Shahrestani, S.; He, Y.

    2016-02-01

    Gelatinous are delicate and transparent by nature, but are conspicuous in many ecosystems when in bloom. Their proliferations are a bothersome and costly nuisance and influencing important food webs and species interactions. More importantly, gelatinous zooplankton respond to climate change rapidly and understanding their upsurge needs information on their recruitment and population dynamics which in turn require their age-structure. However, ageing gelatinous zooplankton is often restricted by the fact that they shrink under unfavorable conditions. In the present study, we examine the potential of using optical coherence tomography (OCT) to age gelatinous zooplankton. OCT is a non-invasive imaging technique that uses light waves to examine 2D or 3D structure of target objects at a resolution of 3-5 µm. We were able to successfully capture both 3D and 2D images of sea nettle muscle fibers. Preliminary results on ctenophores will be discussed. Overall, this non-destructive sampling allows us to scan and capture images of mesoglea from jellyfish cultured in the lab, using the same individual repeatedly through time, documenting its growth which will provide precise measurements to construct an age key that will be applied to gelatinous zooplankton captured in the field. Coupled with information on abundance, we can start to quantify their recruitment timing and success rate.

  11. Lake St. Clair zooplankton: Evidence for post-Dreissena changes

    USGS Publications Warehouse

    David, Katherine A.; Davis, Bruce M.; Hunter, R. Douglas

    2009-01-01

    We surveyed the zooplankton of Lake St. Clair at 12 sites over ten dates from May to October 2000. Mean zooplankton density by site and date was 168.6 individuals/L, with Dreissena spp. veligers the most abundant taxon at 122.7 individuals/L. Rotifers, copepods, and cladocerans were far lower in mean abundance than in the early 1970s (rotifers, 20.9/L; copepods, 18.1/L; and cladocerans, 6.8/L). Species richness of zooplankton taxa in 2000 was 147, which was virtually unchanged from that of the first reported survey in 1894. Overall, the decline in abundance was greatest for rotifers (-90%) and about equal for cladocerans (-69%) and copepods (-66%). The decrease in abundance of Daphnia spp. was especially dramatic in Canadian waters. The decline in the southeastern region was significant for all three major groups of zooplankton, whereas in the northwestern region the decline was significant only for rotifers. From June to August 2000, Lake St. Clair open waters were numerically dominated by Dreissena spp. veligers, with a reduced abundance of rotifers and crustaceans compared to pre-Dreissena spp. surveys. Mean nutrient concentrations were not different from the 1970s, but Secchi depth (greater) and chlorophyll a concentration (lower) were. Disproportionate reduction in rotifer abundance is consistent with hypotheses implicating direct consumption by settled Dreissena spp. Reduction of crustaceans is likely due to more complex interactions including removal of nauplii as well as resource competition for phytoplankton.

  12. The Influence of Individual Variability on Zooplankton Population Dynamics under Different Environmental Conditions

    NASA Astrophysics Data System (ADS)

    Bi, R.; Liu, H.

    2016-02-01

    Understanding how biological components respond to environmental changes could be insightful to predict ecosystem trajectories under different climate scenarios. Zooplankton are key components of marine ecosystems and changes in their dynamics could have major impact on ecosystem structure. We developed an individual-based model of a common coastal calanoid copepod Acartia tonsa to examine how environmental factors affect zooplankton population dynamics and explore the role of individual variability in sustaining population under various environmental conditions consisting of temperature, food concentration and salinity. Total abundance, egg production and proportion of survival were used to measure population success. Results suggested population benefits from high level of individual variability under extreme environmental conditions including unfavorable temperature, salinity, as well as low food concentration, and selection on fast-growers becomes stronger with increasing individual variability and increasing environmental stress. Multiple regression analysis showed that temperature, food concentration, salinity and individual variability have significant effects on survival of A. tonsa population. These results suggest that environmental factors have great influence on zooplankton population, and individual variability has important implications for population survivability under unfavorable conditions. Given that marine ecosystems are at risk from drastic environmental changes, understanding how individual variability sustains populations could increase our capability to predict population dynamics in a changing environment.

  13. Examining shifts in zooplankton community as a response of environmental change in Lakes

    NASA Astrophysics Data System (ADS)

    Ghadouani, Anas; Mines, Conor; Legendre, Pierre; Yan, Norman

    2014-05-01

    We examined 20 years of zooplankton samples from Harp Lake for shifts in zooplankton variability following invasion by zooplankton predator Bythotrephes longimanus, using organism body size—as measured at high resolution by Laser Optical Plankton Counter (LOPC)—as the primary metric of investigation. A period of transitory high variability in the 2yr post-invasion was observed for both body size compositional variability and aggregate variability metrics, with both measures of variability shifting from low or intermediate to high variability immediately following invasion, before shifting again to intermediate variability, 2 yr post-invasion. Aggregate and compositional variability dynamics were also considered in combination over the study period, revealing that the period of transitory high variability coincided with a shift from a community-wide stasis variability pattern to one of asynchrony, before a shift back to stasis 2 yr post-invasion. These dynamics were related to changes in the significant zooplankton species within the Harp Lake community over the pre- and post- invasion periods, and are likely to be indicative of changes in the stability in the zooplankton community following invasion by Bythotrephes. The dual consideration of aggregate and compositional variability as measured by LOPC was found to provide a valuable means to assess the ecological effects of biological invasion on zooplankton communities as a whole, extending our knowledge of the effects of invasion beyond that already revealed through more traditional taxonomic investigation.

  14. Grazing by Zooplankton on Diazotrophs in the Amazon River Plume and Western Tropical North Atlantic

    NASA Astrophysics Data System (ADS)

    Conroy, B.; Steinberg, D. K.; Song, B.; Foster, R.

    2016-02-01

    Organisms capable of fixing di-nitrogen (N2), known as diazotrophs, are important primary producers and a potentially significant source for new nitrogen entering the planktonic food web. However, limited evidence exists for zooplankton grazing on diazotrophs compared to other primary producers. In the western tropical North Atlantic Ocean (WTNA), the Amazon River plume creates a niche for symbiotic diatom-diazotroph associations (DDAs) which can form large blooms. In adjacent non-plume-influenced waters, the colonial cyanobacterium Trichodesmium is abundant. In order to reveal zooplankton-diazotroph grazing interactions and determine the fate of newly fixed nitrogen, gut contents of zooplankton captured in these two regions were compared based on quantitative PCR (qPCR) assay of nitrogenase genes (nifH), and their microbiomes compared using next generation sequencing (NGS) analysis of 16S rRNA genes. We sampled individual copepods from discrete depth intervals (0-25m and 25-50m) and in two size classes (0.5-1mm and 1-2mm) for analysis. A modified DNA extraction protocol was developed and 54 extracts were used as templates in nifH qPCR assays for the larger size fraction diazotrophs (>10µm): Trichodesmium, and Hemiaulus or Rhizosolenia (diatoms)-Richelia (diazotroph) associations. Copepod gut content nifH copies ranged from 1.6 to 13.6 copies individual-1 for the assay targeting the Hemiaulus-Richelia DDA and from 1.1 to 3.0 copies individual-1 for Trichodesmium. 16S NGS conducted on 35 extracts with an Ion Torrent PGM and mothur revealed that cyanobacteria sequences accounted for up to 20% of sequences per extract. Our results show that both DDAs and Trichodesmium are prey for zooplankton, and that new nitrogen moves through the food web via these grazing interactions. These interactions should be considered in future explorations of the global ocean nitrogen cycle.

  15. Variability of zooplankton communities at Condor seamount and surrounding areas, Azores (NE Atlantic)

    NASA Astrophysics Data System (ADS)

    Carmo, Vanda; Santos, Mariana; Menezes, Gui M.; Loureiro, Clara M.; Lambardi, Paolo; Martins, Ana

    2013-12-01

    Seamounts are common topographic features around the Azores archipelago (NE Atlantic). Recently there has been increasing research effort devoted to the ecology of these ecosystems. In the Azores, the mesozooplankon is poorly studied, particularly in relation to these seafloor elevations. In this study, zooplankton communities in the Condor seamount area (Azores) were investigated during March, July and September 2010. Samples were taken during both day and night with a Bongo net of 200 µm mesh that towed obliquely within the first 100 m of the water column. Total abundance, biomass and chlorophyll a concentrations did not vary with sampling site or within the diel cycle but significant seasonal variation was observed. Moreover, zooplankton community composition showed the same strong seasonal pattern regardless of spatial or daily variability. Despite seasonal differences, the zooplankton community structure remained similar for the duration of this study. Seasonal variability better explained our results than mesoscale spatial variability. Spatial homogeneity is probably related with island proximity and local dynamics over Condor seamount. Zooplankton literature for the region is sparse, therefore a short review of the most important zooplankton studies from the Azores is also presented.

  16. Influence of spatial heterogeneity on the type of zooplankton functional response: A study based on field observations

    NASA Astrophysics Data System (ADS)

    Morozov, Andrew; Arashkevich, Elena; Reigstad, Marit; Falk-Petersen, Stig

    2008-10-01

    Mathematical models of plankton dynamics are sensitive to the choice of type of zooplankton functional response, i.e., to how the rate of intake of food varies with the food density. Conventionally, the conclusion on the actual type of functional response for a given zooplankton species is made based upon laboratory analysis on experimental feeding. In this paper, we show that such an approach can be too simplistic and misleading. Based on real ocean data obtained from three expeditions of R/V Jan Mayen in the Barents Sea in 2003-2005, we demonstrate that vertical heterogeneity in algal distribution as well as active vertical movement of herbivorous zooplankton can modify the type of trophic response completely. In particular, we found that the rate of average intake of algae by Calanus glacialis exhibits a Holling type III response, instead of Holling type I or II found previously in laboratory experiments. We argue that this conceptual discrepancy is due to the ability of the zooplankton to feed in layers with high algal density and to avoid depths with lower algal density. Since theoretical studies would predict enhancing in system stability in the case of Holling type III, our results may be of importance for understanding the main factors controlling plankton dynamics.

  17. Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon

    NASA Astrophysics Data System (ADS)

    Hunt, Brian P. V.; Bonnet, Sophie; Berthelot, Hugo; Conroy, Brandon J.; Foster, Rachel A.; Pagano, Marc

    2016-05-01

    In oligotrophic tropical and subtropical oceans, where strong stratification can limit the replenishment of surface nitrate, dinitrogen (N2) fixation by diazotrophs can represent a significant source of nitrogen (N) for primary production. The VAHINE (VAriability of vertical and tropHIc transfer of fixed N2 in the south-wEst Pacific) experiment was designed to examine the fate of diazotroph-derived nitrogen (DDN) in such ecosystems. In austral summer 2013, three large ( ˜ 50 m3) in situ mesocosms were deployed for 23 days in the New Caledonia lagoon, an ecosystem that typifies the low-nutrient, low-chlorophyll environment, to stimulate diazotroph production. The zooplankton component of the study aimed to measure the incorporation of DDN into zooplankton biomass, and assess the role of direct diazotroph grazing by zooplankton as a DDN uptake pathway. Inside the mesocosms, the diatom-diazotroph association (DDA) het-1 predominated during days 5-15 while the unicellular diazotrophic cyanobacteria UCYN-C predominated during days 15-23. A Trichodesmium bloom was observed in the lagoon (outside the mesocosms) towards the end of the experiment. The zooplankton community was dominated by copepods (63 % of total abundance) for the duration of the experiment. Using two-source N isotope mixing models we estimated a mean ˜ 28 % contribution of DDN to zooplankton nitrogen biomass at the start of the experiment, indicating that the natural summer peak of N2 fixation in the lagoon was already contributing significantly to the zooplankton. Stimulation of N2 fixation in the mesocosms corresponded with a generally low-level enhancement of DDN contribution to zooplankton nitrogen biomass, but with a peak of ˜ 73 % in mesocosm 1 following the UCYN-C bloom. qPCR analysis targeting four of the common diazotroph groups present in the mesocosms (Trichodesmium, het-1, het-2, UCYN-C) demonstrated that all four were ingested by copepod grazers, and that their abundance in copepod

  18. Size-dependent responses of zooplankton to submerged macrophyte restoration in a subtropical shallow lake

    NASA Astrophysics Data System (ADS)

    Zeng, Lei; He, Feng; Zhang, Yi; Liu, Biyun; Dai, Zhigang; Zhou, Qiaohong; Wu, Zhenbin

    2018-03-01

    To explore the size-dependent responses of zooplankton to submerged macrophyte restoration, we collected macrophyte, zooplankton and water quality samples seasonally from a subtropical shallow lake from 2010 to 2012. Special attention was given to changes in rotifers and crustaceans (cladocerans and copepods). The rotifers were grouped into three size classes (<200 μm, 200 μm-400 μm, >400 μm) to explore their size-related responses to macrophyte restoration. The results showed that during the restoration, the annual mean biomass and macrophyte coverage increased significantly from 0 to 637 g/m2 and 0 to 27%, respectively. In response, the density and biomass of crustaceans and the crustacean-to-rotifer ratio increased significantly, while the rotifer density decreased significantly. Moreover, rotifers showed significant sizedependent responses to macrophyte restoration. Specially, rotifers <400 μm were significantly suppressed, while those ≥400 μm were significantly encouraged. Overall, the population of large-sized zooplankton tended to boom, while that of small rotifers was inhibited during macrophyte restoration. Redundancy analysis (RDA) revealed positive correlations between macrophytes and crustaceans, rotifers and COD or Chl- a, but negative correlations between macrophytes and COD or Chl- a, and between crustaceans and Chl- a. Moreover, the results indicate that increased predation on phytoplankton by large-sized zooplankton might be an important mechanism for macrophyte restoration during development of aquatic ecosystems, and that this mechanism played a very important role in promoting the formation of a clear-water state in subtropical shallow lakes.

  19. Effects of repeated exposure to 4-nonylphenol on the zooplankton community in littoral enclosures

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    O`Halloran, S.L.; Liber, K.; Gangl, J.A.

    1999-03-01

    The effects of 4-nonylphenol (NP) on freshwater zooplankton were evaluated in 18 littoral enclosure mesocosms in northeastern Minnesota. The 18 enclosures were allocated to three blocks of six units with each block including two untreated control enclosures and one enclosure for each of four NP treatments. Treated enclosures received 11 applications of NP over a 20-d period between July 8 and 28, 1993. Maximum NP concentrations measured in the water column 2 h after each application averaged ({+-} SD) 5 {+-} 4, 23 {+-} 11, 76 {+-} 21, and 243 {+-} 41 {micro}g/L over the 11 applications. Nonylphenol dissipated rapidlymore » from the water column but was more persistent in sediments and in/on macrophytes. All cladoceran and copepod taxa were significantly reduced in abundance at 243 {+-} 41 {micro}g/L; some sensitive taxa were also affected by 76 {+-} 21 and 23 {+-} 11 {micro}g/L. While many rotifer taxa were unaffected at any of the test concentrations, several were affected at {ge} 76 {+-} 21 {micro}g/L. Ostracods were only affected at 2,243 {+-} 41 {micro}g/L. No zooplankton taxon was affected at 5 {+-} 4 {micro}g/L. The period of maximum impact usually occurred within 1 to 7 d of the last NP application, and recovery to control abundance levels generally occurred within 7 to 28 d of the last NP application. Two sensitive taxa, Acroperus and Calanoida, did not recover at {ge} 76 {+-} 21 {micro}g/L by the end of the study. The maximum acceptable toxicant concentration for protection of all zooplankton taxa was estimated at {approximately} 10 {micro}g/L, although overall community diversity was unaffected at 23 {+-} 11. The water was the most probable route of NP exposure, but the greater persistence of NP residues in/on macrophytes may have contributed to the lack of recovery of some macrophyte-associated taxa.« less

  20. Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean.

    PubMed

    Andradi-Brown, Dominic A; Head, Catherine E I; Exton, Dan A; Hunt, Christina L; Hendrix, Alicia; Gress, Erika; Rogers, Alex D

    2017-01-01

    Mesophotic coral ecosystems (MCEs, reefs 30-150 m) are understudied, yet the limited research conducted has been biased towards large sessile taxa, such as scleractinian corals and sponges, or mobile taxa such as fishes. Here we investigate zooplankton communities on shallow reefs and MCEs around Utila on the southern Mesoamerican Barrier Reef using planktonic light traps. Zooplankton samples were sorted into broad taxonomic groups. Our results indicate similar taxonomic zooplankton richness and overall biomass between shallow reefs and MCEs. However, the abundance of larger bodied (>2 mm) zooplanktonic groups, including decapod crab zoea, mysid shrimps and peracarid crustaceans, was higher on MCEs than shallow reefs. Our findings highlight the importance of considering zooplankton when identifying broader reef community shifts across the shallow reef to MCE depth gradient.

  1. Moonlight Drives Ocean-Scale Mass Vertical Migration of Zooplankton during the Arctic Winter.

    PubMed

    Last, Kim S; Hobbs, Laura; Berge, Jørgen; Brierley, Andrew S; Cottier, Finlo

    2016-01-25

    In extreme high-latitude marine environments that are without solar illumination in winter, light-mediated patterns of biological migration have historically been considered non-existent [1]. However, diel vertical migration (DVM) of zooplankton has been shown to occur even during the darkest part of the polar night, when illumination levels are exceptionally low [2, 3]. This paradox is, as yet, unexplained. Here, we present evidence of an unexpected uniform behavior across the entire Arctic, in fjord, shelf, slope and open sea, where vertical migrations of zooplankton are driven by lunar illumination. A shift from solar-day (24-hr period) to lunar-day (24.8-hr period) vertical migration takes place in winter when the moon rises above the horizon. Further, mass sinking of zooplankton from the surface waters and accumulation at a depth of ∼50 m occurs every 29.5 days in winter, coincident with the periods of full moon. Moonlight may enable predation of zooplankton by carnivorous zooplankters, fish, and birds now known to feed during the polar night [4]. Although primary production is almost nil at this time, lunar vertical migration (LVM) may facilitate monthly pulses of carbon remineralization, as they occur continuously in illuminated mesopelagic systems [5], due to community respiration of carnivorous and detritivorous zooplankton. The extent of LVM during the winter suggests that the behavior is highly conserved and adaptive and therefore needs to be considered as "baseline" zooplankton activity in a changing Arctic ocean [6-9]. VIDEO ABSTRACT. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  2. Changes in seasonal nearshore zooplankton abundance patterns in Lake Ontario following establishment of the exotic predator Cercopagis pengoi

    USGS Publications Warehouse

    Warner, David M.; Rudstam, Lars G.; Benoit, Hugues; Mills, Edward L.; Johannsson, Ora E.

    2006-01-01

    Cercopagis pengoi, a zooplanktivore first discovered in Lake Ontario in 1998, may reduce availability of prey for planktivorous fish. Cercoapgis pengoi is most abundant in late summer and fall. Therefore, we hypothesized that abundance of small zooplankton (bosminids and cyclopoids) species would decrease at that time. To determine if the establishment of C. pengoi was followed by changes in the zooplankton community, seasonal patterns in nearshore zooplankton collected from May to October 1995–2000 were examined. Early summer density of small zooplankton was similar in all years while late summer and fall densities were significantly lower in 1998–2000 than in 1995–1997. The declines of small zooplankton coincided seasonally with the peak in C. pengoidensity. Other possible causes for the observed changes in small zooplankton are less likely. High levels of fish predation should have resulted in smaller zooplankton in 1998–2000 than in 1995–1997 and larger declines in Daphnia than other groups. This was not observed. There was no significant decline in chlorophyll-a concentrations or changes in temperature between 1995–1997 and 1998–2000. Therefore, the declines in density of small zooplankton were most likely the result of C. pengoi predation. The effect of C. pengoi establishment on alewives is increased competition for zooplankton prey but C. pengoi has replaced a portion of the zooplankton biomass and adult alewife diet formerly dominated by Diacyclops thomasi and Bosmina longirostris.

  3. EVALUATION OF OPTICALLY ACQUIRED ZOOPLANKTON SIZE-SPECTRUM DATA AS A POTENTIAL TOOL FOR ASSESSMENT OF CONDITION IN THE GREAT LAKES

    EPA Science Inventory

    An optical zooplankton counter (OPC) potentially provides as assessment tool for zooplankton condition in ecosystems that is rapid, economical, and spatially extensive. We collected zooplankton data with an optical zooplankton counter in 20 near-shore regions of four of the Laure...

  4. Effect of Main-stem Dams on Zooplankton Communities of the Missouri River (USA)

    EPA Science Inventory

    We examined the distribution and abundance of zooplankton from 146 sites on the Missouri River and found large shifts in the dominance of major taxa between management zones of this regulated river. Crustacean zooplankton were dominant in the inter-reservoir zone of the river, an...

  5. Zooplankton assemblages in montane lakes and ponds of Mount Rainier National Park, Washington State, USA

    USGS Publications Warehouse

    Larson, G.L.; Hoffman, R.; McIntire, C.D.; Lienkaemper, G.; Samora, B.

    2009-01-01

    Water quality and zooplankton samples were collected during the ice-free periods between 1988 and 2005 from 103 oligotrophic montane lakes and ponds located in low forest to alpine vegetation zones in Mount Rainier National Park, Washington State, USA. Collectively, 45 rotifer and 44 crustacean taxa were identified. Most of the numerically dominant taxa appeared to have wide niche breadths. The average number of taxa per lake decreased with elevation and generally increased as maximum lake depths increased (especially for rotifers). With one exception, fish presence/absence did not explain the taxonomic compositions of crustacean zooplankton assemblages. Many rotifer species were common members of zooplankton assemblages in montane lakes and ponds in western North America, whereas the crustacean taxa were common to some areas of the west, but not others. Constraints of the environmental variables did not appear to provide strong gradients to separate the distributions of most zooplankton species. This suggests that interspecific competitive interactions and stochastic processes regulate the taxonomic structures of the zooplankton assemblages at the landscape level. Crustacean species that had broad niche breadths were associated with different rotifer taxa across the environmental gradients. Studies of zooplankton assemblages need to address both crustacean and rotifer taxa, not one or the other.

  6. Trace metal dynamics in zooplankton from the Bay of Bengal during summer monsoon.

    PubMed

    Rejomon, G; Kumar, P K Dinesh; Nair, M; Muraleedharan, K R

    2010-12-01

    Trace metal (Fe, Co, Ni, Cu, Zn, Cd, and Pb) concentrations in zooplankton from the mixed layer were investigated at 8 coastal and 20 offshore stations in the western Bay of Bengal during the summer monsoon of 2003. The ecotoxicological importance of trace metal uptake was apparent within the Bay of Bengal zooplankton. There was a distinct spatial heterogeneity of metals, with highest concentrations in the upwelling zones of the southeast coast, moderate concentrations in the cyclonic eddy of the northeast coast, and lowest concentrations in the open ocean warm gyre regions. The average trace metal concentrations (μg g⁻¹) in coastal zooplankton (Fe, 44894.1 ± 12198.2; Co, 46.2 ± 4.6; Ni, 62.8 ± 6.5; Cu, 84.9 ± 6.7; Zn, 7546.8 ± 1051.7; Cd, 46.2 ± 5.6; Pb, 19.2 ± 2.6) were higher than in offshore zooplankton (Fe, 3423.4 ± 681.6; Co, 19.5 ± 3.81; Ni, 25.3 ± 7.3; Cu, 29.4 ± 4.2; Zn, 502.3 ± 124.3; Cd, 14.3 ± 2.9; Pb, 3.2 ± 2.0). A comparison of average trace metal concentrations in zooplankton from the Bay of Bengal showed enrichment of Fe, Co, Ni, Cu, Zn, Cd, and Pb in coastal zooplankton may be related to metal absorption from primary producers, and differences in metal concentrations in phytoplankton from coastal waters (upwelling zone and cyclonic eddy) compared with offshore waters (warm gyre). Zooplankton showed a great capacity for accumulations of trace metals, with average concentration factors of 4 867 929 ± 569 971, 246 757 ± 51 321, 337 180 ± 125 725, 43 480 ± 11 212, 1 046 371 ± 110 286, 601 679 ± 213 949, and 15 420 ± 9201 for Fe, Co, Ni, Cu, Zn, Cd, and Pb with respect to dissolved concentrations in coastal and offshore waters of the Bay of Bengal. © 2009 Wiley Periodicals, Inc. Environ Toxicol, 2009. Copyright © 2009 Wiley Periodicals, Inc.

  7. Zooplankton data: Vertical distributions of zooplankton in the Norweigian and Greenland Seas during summer, 1989

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lane, P.V.Z.; Smith, S.L.; Schwarting, E.M.

    1993-08-01

    Recent studies of zooplankton populations in the Greenland Sea have focused on processes at the Marginal Ice Zone (MIZ) and the areas immediately adjacent to it under the ice and in open water. These studies have shown a relatively short period of intense secondary productivity which is closely linked temporally and spatially to phytoplankton blooms occurring near the ice edge in spring and early summer. During the summer of 1989 we participated in a project focusing on benthic and water column processes in the basins of the Norwegian and Greenland Seas. This study allowed us to compare biological processes atmore » the MIZ with those occurring in the open waters of the Greenland Sea, and to compare processes at both of these locations with those in the Norwegian Sea. The data presented in this report are the results of zooplankton net tows covering the upper 1000 meters of the water column over the Norwegian Sea basin and the Greenland Sea basin, and the upper 500 meters of open water adjacent to the MIZ in the Greenland Sea. Sampling was conducted between 12 and 29 July 1989.« less

  8. Zooplankton responses to increasing sea surface temperatures in the southeastern Australia global marine hotspot

    NASA Astrophysics Data System (ADS)

    Kelly, Paige; Clementson, Lesley; Davies, Claire; Corney, Stuart; Swadling, Kerrie

    2016-10-01

    Southeastern Australia is a 'hotspot' for oceanographic change. Here, rapidly increasing sea surface temperatures, rising at more than double the global trend, are largely associated with a southerly extension of the East Australian Current (EAC) and its eddy field. Maria Island, situated at the southern end of the EAC extension at 42°S, 148°E, has been used as a site to study temperature-driven biological trends in this region of accelerated change. Zooplankton have short life cycles (usually < 1 year) and are highly sensitive to environmental change, making them an ideal indicator of the biological effects of an increased southward flow of the EAC. Data from in-situ net drops and the Continuous Plankton Recorder (CPR), collected since 2009, together with historical zooplankton abundance data, have been analysed in this study. Like the North Atlantic, zooplankton communities of southeastern Australia are responding to increased temperatures through relocation, long-term increases in warm-water species and a shift towards a zooplankton community dominated by small copepods. The biological trends present evidence of extended EAC influence at Maria Island into autumn and winter months, which has allowed for the rapid establishment of warm-water species during these seasons, and has increased the similarity between Maria Island and the more northerly Port Hacking zooplankton community. Generalised Linear Models (GLM) suggest the high salinity and low nutrient properties of EAC-water to be the primary drivers of increasing abundances of warm-water species off southeastern Australia. Changes in both the species composition and size distribution of the Maria Island zooplankton community will have effects for pelagic fisheries. This study provides an indication of how zooplankton communities influenced by intensifying Western Boundary currents may respond to rapid environmental change.

  9. Modelling the relationship between zooplankton biomass and environmental variations in the distribution of 210Po during a one year cycle in northwestern Mediterranean coastal waters.

    PubMed

    Färber Lorda, Jaime; Tateda, Yutaka; Fowler, Scott W

    2017-08-01

    To clarify the relationship between zooplankton biomass and the environmental kinetics of the natural radionuclide 210 Po during a one-year period (October 1995 to November 1996) in northwestern Mediterranean coastal waters, a modelling analysis was applied. Using 210 Po concentrations in seawater and zooplankton, the 210 Po uptake rate constant from food for zooplankton was evaluated using a biokinetics calculation involving the uptake and the excretion rate constants between seawater and zooplankton. Using the transfer constants obtained, the 210 Po concentrations in zooplankton were reconstructed and validated by observed concentrations. The simulation results were in good agreement with the measured 210 Po concentrations in zooplankton. Assuming that 210 Po fecal excretion represents the majority of the excretion of 210 Po from zooplankton, the fecal matter associated 210 Po vertical flux was calculated, and compared with the observed vertical fluxes of 210 Po measured in sediment traps. The modelling evaluation showed that fecal pellet vertical transport could not fully explain the observed sinking fluxes of particulate organic matter at 150 m depth, suggesting that other sinking biodetrital aggregates are also important components of the plankton-derived vertical flux of 210 Po. The relationship between 210 Po concentration in seawater and that in rain and dry fallout and their potential effect on 210 Po concentrations in zooplankton at this location were also examined. A similar, but diphased trend between 210 Po in zooplankton and 210 Po in rain and dry fallout deposition rate was demonstrated. 210 Po concentrations in the dissolved phase of seawater tended to diminish as mean daily rainfall increased suggesting that rain inputs serve as a 210 Po dilution mechanism in seawater at this location. Copyright © 2016 Elsevier Ltd. All rights reserved.

  10. Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems

    NASA Astrophysics Data System (ADS)

    Messié, Monique; Chavez, Francisco P.

    2017-09-01

    A simple combination of wind-driven nutrient upwelling, surface currents, and plankton growth/grazing equations generates zooplankton patchiness and hotspots in coastal upwelling regions. Starting with an initial input of nitrate from coastal upwelling, growth and grazing equations evolve phytoplankton and zooplankton over time and space following surface currents. The model simulates the transition from coastal (large phytoplankton, e.g., diatoms) to offshore (picophytoplankton and microzooplankton) communities, and in between generates a large zooplankton maximum. The method was applied to four major upwelling systems (California, Peru, Northwest Africa, and Benguela) using latitudinal estimates of wind-driven nitrate supply and satellite-based surface currents. The resulting zooplankton simulations are patchy in nature; areas of high concentrations coincide with previously documented copepod and krill hotspots. The exercise highlights the importance of the upwelling process and surface currents in shaping plankton communities.

  11. Dynamics of Marine Zooplankton: Social Behavior, Ecological Interactions, and Physically-Induced Variability

    DTIC Science & Technology

    2008-02-01

    97 3.3.2 Steady-state solutions ..... ........................ 100 3.4 Ecosystem dynamics ...... ............................. 102 3.4.1 Fast ...zooplankton motion is decoupled from biological ac- tivities, as calculated in Flier] et al. (1999). When the diffusion rate is fast compared to phytoplankton...homogenize the zooplankton distribution, which remains spatially more intermit - tent than a passive scalar field. The last panel shows the index for

  12. Distribution and abundance of zooplankton populations in Crater Lake, Oregon

    USGS Publications Warehouse

    Larson, G.L.; McIntire, C.D.; Buktenica, M.W.; Girdner, S.F.; Truitt, R.E.

    2007-01-01

    The zooplankton assemblages in Crater Lake exhibited consistency in species richness and general taxonomic composition, but varied in density and biomass during the period between 1988 and 2000. Collectively, the assemblages included 2 cladoceran taxa and 10 rotifer taxa (excluding rare taxa). Vertical habitat partitioning of the water column to a depth of 200 m was observed for most species with similar food habits and/or feeding mechanisms. No congeneric replacement was observed. The dominant species in the assemblages were variable, switching primarily between periods of dominance of Polyarthra-Keratella cochlearis and Daphnia. The unexpected occurrence and dominance of Asplanchna in 1991 and 1992 resulted in a major change in this typical temporal shift between Polyarthra-K. cochlearis and Daphnia. Following a collapse of the zooplankton biomass in 1993 that was probably caused by predation from Asplanchna, Kellicottia dominated the zooplankton assemblage biomass between 1994 and 1997. The decline in biomass of Kellicottia by 1998 coincided with a dramatic increase in Daphnia biomass. When Daphnia biomass declined by 2000, Keratella biomass increased again. Thus, by 1998 the assemblage returned to the typical shift between Keratella-Polyarthra and Daphnia. Although these observations provided considerable insight about the interannual variability of the zooplankton assemblages in Crater Lake, little was discovered about mechanisms behind the variability. When abundant, kokanee salmon may have played an important role in the disappearance of Daphnia in 1990 and 2000 either through predation, inducing diapause, or both. ?? 2007 Springer Science+Business Media B.V.

  13. Global patterns of predator diversity in the open oceans.

    PubMed

    Worm, Boris; Sandow, Marcel; Oschlies, Andreas; Lotze, Heike K; Myers, Ransom A

    2005-08-26

    The open oceans comprise most of the biosphere, yet patterns and trends of species diversity there are enigmatic. Here, we derive worldwide patterns of tuna and billfish diversity over the past 50 years, revealing distinct subtropical "hotspots" that appeared to hold generally for other predators and zooplankton. Diversity was positively correlated with thermal fronts and dissolved oxygen and a nonlinear function of temperature (approximately 25 degrees C optimum). Diversity declined between 10 and 50% in all oceans, a trend that coincided with increased fishing pressure, superimposed on strong El Niño-Southern Oscillation-driven variability across the Pacific. We conclude that predator diversity shows a predictable yet eroding pattern signaling ecosystem-wide changes linked to climate and fishing.

  14. Mercury concentration variability in the zooplankton of the southern Baltic coastal zone

    NASA Astrophysics Data System (ADS)

    Bełdowska, Magdalena; Mudrak-Cegiołka, Stella

    2017-12-01

    Being a toxic element, mercury is introduced to the human organism through the consumption of fish and seafood, which in turn often feed on zooplankton. The bioaccumulation of Hg by zooplankton is an important factor influencing the magnitude of the mercury load introduced with food into the predator organism. Therefore the present article attempts to identify the processes and factors influencing Hg concentration in the zooplankton of the coastal zone, an area where marine organisms - an attractive food source for humans - thrive. This is particularly important in areas where climate changes influence the species composition and quantity of plankton. The studies were carried out on three test sites in the coastal zone of the southern Baltic Sea in the period from December 2011 to May 2013. The obtained results show that the shorting of the winter season is conducive to Hg increase in zooplankton and, consequently, in the trophic chain. High mercury concentrations were measured in genus Synchaeta and Keratella when Mesodinium rubrum were predominant in phytoplankton, while other sources of this metal in the plankton fauna were epilithon, epiphton and microbenthos. This is of particular importance when it comes to sheltered bays and estuaries with low water dynamics.

  15. Material properties of zooplankton and nekton from the California current

    NASA Astrophysics Data System (ADS)

    Becker, Kaylyn

    This study measured the material properties of zooplankton, Pacific hake (Merluccius productus), Humboldt squid (Dosidicus gigas), and two species of myctophids (Symbolophorus californiensis and Diaphus theta) collected from the California Current ecosystem. The density contrast (g) was measured for euphausiids, decapods (Sergestes similis), amphipods (Primno macropa, Phronima sp., and Hyperiid spp.), siphonophore bracts, chaetognaths, larval fish, crab megalopae, larval squid, and medusae. Morphometric data (length, width, and height) were collected for these taxa. Density contrasts varied within and between zooplankton taxa. The mean and standard deviation for euphausiid density contrast were 1.059 +/- 0.009. Relationships between zooplankton density contrast and morphometric measurements, geographic location, and environmental conditions were investigated. Site had a significant effect on euphausiid density contrast. Density contrasts of euphausiids collected in the same geographic area approximately 4-10 days apart were significantly higher (p < 0.001). Sound speed contrast (h) was measured for euphausiids and pelagic decapods (S. similis) and it varied between taxa. The mean and standard deviation for euphausiid sound speed were 1.019 +/- 0.009. Euphausiid mass was calculated from density measurements and volume, and a relationship between euphausiid mass and length was produced. We determined that euphausiid from volumes could be accurately estimated two dimensional measurements of animal body shape, and that biomass (or biovolume) could be accurately calculated from digital photographs of animals. Density contrast (g) was measured for zooplankton, pieces of hake flesh, myctophid flesh, and of the following Humboldt squid body parts: mantle, arms, tentacle, braincase, eyes, pen, and beak. The density contrasts varied within and between fish taxa, as well as among squid body parts. Effects of animal length and environmental conditions on nekton density

  16. The effects of juvenile American shad planktivory on zooplankton production in Columbia River food webs

    USGS Publications Warehouse

    Haskell, Craig A.; Tiffan, Kenneth F.; Rondorf, Dennis W.

    2013-01-01

    Columbia River reservoirs support a large population of nonnative American Shad Alosa sapidissima that consume the zooplankton that native fishes also rely on. We hypothesized that the unprecedented biomass of juvenile American Shad in John Day Reservoir is capable of altering the zooplankton community if these fish consume a large portion of the zooplankton production. We derived taxon-specific estimates of zooplankton production using field data and a production model from the literature. Empirical daily ration was estimated for American Shad and expanded to population-level consumption using abundance and biomass data from hydroacoustic surveys. Daphnia spp. production was high in early summer but declined to near zero by September as shad abundance increased. American Shad sequentially consumed Daphnia spp., copepods, and Bosmina spp., which tracked the production trends of these taxa. American Shad evacuation rates ranged from 0.09 to 0.24/h, and daily rations ranged from 0.008 to 0.045 g·g−1·d−1 (dry weight) over all years. We observed peak American Shad biomass (45.2 kg/ha) in 1994, and daily consumption (1.6 kg/ha) approached 30% (5.3 kg/ha) of zooplankton production. On average, American Shad consumed 23.6% of the available zooplankton production (range, <1–83%). The changes in the zooplankton community are consistent with a top-down effect of planktivory by American Shad associated with their unprecedented biomass and consumption, but the effects are likely constrained by temperature, nutrient flux, and the seasonal production patterns of zooplankton in John Day Reservoir. American Shad add to the planktivory exerted by other species like Neomysis mercedis to reduce the capacity of the reservoir to support other planktivorous fishes. The introduction of American Shad and other nonnative species will continue to alter the food web in John Day Reservoir, potentially affecting native fishes, including Pacific salmon Oncorhynchus spp.

  17. Near-surface enrichment of zooplankton over a shallow back reef: implications for coral reef food webs

    NASA Astrophysics Data System (ADS)

    Alldredge, A. L.; King, J. M.

    2009-12-01

    Zooplankton were 3-8 times more abundant during the day near the surface than elsewhere in the water column over a 1-2.4 m deep back reef in Moorea, French Polynesia. Zooplankton were also significantly more abundant near the surface at night although gradients were most pronounced under moonlight. Zooplankton in a unidirectional current became concentrated near the surface within 2 m of departing a well-mixed trough immediately behind the reef crest, indicating that upward swimming behavior, rather than near-bottom depletion by reef planktivores, was the proximal cause of these gradients. Zooplankton were highly enriched near the surface before and after a full lunar eclipse but distributed evenly throughout the water column during the eclipse itself supporting light as a proximal cue for the upward swimming behavior of many taxa. This is the first investigation of the vertical distribution of zooplankton over a shallow back reef typical of island barrier reef systems common around the world. Previous studies on deeper fringing reefs found zooplankton depletion near the bottom but no enrichment aloft. In Moorea, where seawater is continuously recirculated out the lagoon and back across the reef crest onto the back reef, selection for upward swimming behavior may be especially strong, because the surface serves both as a refuge from predation and an optimum location for retention within the reef system. Planktivorous fish and corals that can forage or grow even marginally higher in the water column might have a substantial competitive advantage over those nearer the bottom on shallow reefs. Zooplankton abundance varied more over a few tens of centimeters vertical distance than it did between seasons or even between day and night indicating that great care must be taken to accurately assess the availability of zooplankton as food on shallow reefs.

  18. Lake Roosevelt Fisheries Evaluation Program, Part B; Limnology, Primary Production, and Zooplankton in Lake Roosevelt, Washington, 1998 Annual Report.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shields, John; Spotts, Jim; Underwood, Keith

    2002-11-01

    The Lake Roosevelt Fisheries Evaluation Program is the result of a merger between two projects, the Lake Roosevelt Monitoring Program (BPA No. 8806300) and the Lake Roosevelt Data Collection Project (BPA No. 9404300). These projects were merged in 1996 to continue work historically completed under the separate projects, and is now referred to as the Lake Roosevelt Fisheries Evaluation Program. The 1998 Annual Report, Part B. Limnology, Primary Production, and Zooplankton in Lake Roosevelt, Washington examined the limnology, primary production, and zooplankton at eleven locations throughout the reservoir. The 1998 research protocol required a continuation of the more complete examinationmore » of limnological parameters in Lake Roosevelt that began in 1997. Phytoplankton and periphyton speciation, phytoplankton and periphyton chlorophyll a analysis, complete zooplankton biomass analysis by taxonomic group, and an increased number of limnologic parameters (TDG, TDS, etc.) were examined and compared with 1997 results. Total dissolved gas levels were greatly reduced in 1998, compared with 1997, likely resulting from the relatively normal water year experienced in 1998. Mean water temperatures were similar to what was observed in past years, with a maximum of 22.7 C and a minimum of 2.6 C. Oxygen concentrations were also relatively normal, with a maximum of 16.6 mg/L, and a minimum of 0.9 mg/L. Phytoplankton in Lake Roosevelt was primarily composed of microplankton (29.6%), Cryptophyceae (21.7%), and Bacillriophyceae (17.0 %). Mean total phytoplankton chlorophyll a maximum concentration occurred in May (3.53 mg/m{sup 3}), and the minimum in January (0.39 mg/m{sup 3}). Phytoplankton chlorophyll a concentrations appear to be influenced by hydro-operations and temperature. Trophic status as indicated by phytoplankton chlorophyll a concentrations place Lake Roosevelt in the oligomesotrophic range. Periphyton colonization rates and biovolume were significantly greater at a

  19. Functional & phylogenetic diversity of copepod communities

    NASA Astrophysics Data System (ADS)

    Benedetti, F.; Ayata, S. D.; Blanco-Bercial, L.; Cornils, A.; Guilhaumon, F.

    2016-02-01

    The diversity of natural communities is classically estimated through species identification (taxonomic diversity) but can also be estimated from the ecological functions performed by the species (functional diversity), or from the phylogenetic relationships among them (phylogenetic diversity). Estimating functional diversity requires the definition of specific functional traits, i.e., phenotypic characteristics that impact fitness and are relevant to ecosystem functioning. Estimating phylogenetic diversity requires the description of phylogenetic relationships, for instance by using molecular tools. In the present study, we focused on the functional and phylogenetic diversity of copepod surface communities in the Mediterranean Sea. First, we implemented a specific trait database for the most commonly-sampled and abundant copepod species of the Mediterranean Sea. Our database includes 191 species, described by seven traits encompassing diverse ecological functions: minimal and maximal body length, trophic group, feeding type, spawning strategy, diel vertical migration and vertical habitat. Clustering analysis in the functional trait space revealed that Mediterranean copepods can be gathered into groups that have different ecological roles. Second, we reconstructed a phylogenetic tree using the available sequences of 18S rRNA. Our tree included 154 of the analyzed Mediterranean copepod species. We used these two datasets to describe the functional and phylogenetic diversity of copepod surface communities in the Mediterranean Sea. The replacement component (turn-over) and the species richness difference component (nestedness) of the beta diversity indices were identified. Finally, by comparing various and complementary aspects of plankton diversity (taxonomic, functional, and phylogenetic diversity) we were able to gain a better understanding of the relationships among the zooplankton community, biodiversity, ecosystem function, and environmental forcing.

  20. Multifrequency acoustic observations of zooplankton in Knight Inlet, B.C

    NASA Astrophysics Data System (ADS)

    Trevorrow, Mark V.; Mackas, David L.; Benfield, Mark C.

    2004-05-01

    A collaborative investigation of midwater zooplankton aggregations in a coastal fjord was conducted in November 2002. Midwater aggregations of zooplankton in a coastal fjord were sampled and mapped using a calibrated, three-frequency (38, 120, and 200 kHz) vessel-based echo-sounder system, a multinet towed zooplankton net (BIONESS), and a high-resolution in situ camera system (ZOOVIS). Dense daytime layers of euphausiids and amphipods near 70- to 90-m depth were found in the lower reaches of the inlet, especially concentrated by tidal flows around a sill which rises above the layer. Quantitative euphausiid and amphipod backscattering measurements, combined with in situ species, size, and abundance estimates, were found to agree closely with recent size- and orientation-averaged fluid-cylinder scattering models produced by Stanton et al. Also, in situ scattering measurements of physonect siphonophores were found to have a much stronger low-frequency (38 kHz) scattering strength, in agreement with a simple bubble scattering model. [Work supported by Dr. J. Eckman, ONR code 322BC.

  1. Acoustic Scattering Classification of Zooplankton and Microstructure

    DTIC Science & Technology

    2001-09-30

    As part of this investigation, we have been observing concentrations of siphonulae, a larval form of the gas-bearing zooplankton siphonophore . The...situ measurements of acoustic target strengths of siphonophores , a gas-bearing zooplankter,” ICES J. Mar. Sci. 58: 740-749. Warren, J.D., T.K

  2. Temporal variation of cesium isotope concentrations and atom ratios in zooplankton in the Pacific off the east coast of Japan

    PubMed Central

    Ikenoue, Takahito; Takata, Hyoe; Kusakabe, Masashi; Kudo, Natsumi; Hasegawa, Kazuyuki; Ishimaru, Takashi

    2017-01-01

    After the Fukushima Daiichi Nuclear Power Plant accident in March 2011, concentrations of cesium isotopes (133Cs, 134Cs, and 137Cs) were measured in zooplankton collected in the Pacific off the east coast of Japan from May 2012 to February 2015. The time series of the data exhibited sporadic 137Cs concentration peaks in zooplankton. In addition, the atom ratio of 137Cs/133Cs in zooplankton was consistently high compared to that in ambient seawater throughout the sampling period. These phenomena cannot be explained fully by the bioaccumulation of 137Cs in zooplankton via ambient seawater intake, the inclusion of resuspended sediment in the plankton sample, or the taxonomic composition of the plankton. Autoradiography revealed highly radioactive particles within zooplankton samples, which could be the main factor underlying the sporadic appearance of high 137Cs concentrations in zooplankton as well as the higher ratio of 137Cs/133Cs in zooplankton than in seawater. PMID:28051136

  3. Temporal variation of cesium isotope concentrations and atom ratios in zooplankton in the Pacific off the east coast of Japan.

    PubMed

    Ikenoue, Takahito; Takata, Hyoe; Kusakabe, Masashi; Kudo, Natsumi; Hasegawa, Kazuyuki; Ishimaru, Takashi

    2017-01-04

    After the Fukushima Daiichi Nuclear Power Plant accident in March 2011, concentrations of cesium isotopes ( 133 Cs, 134 Cs, and 137 Cs) were measured in zooplankton collected in the Pacific off the east coast of Japan from May 2012 to February 2015. The time series of the data exhibited sporadic 137 Cs concentration peaks in zooplankton. In addition, the atom ratio of 137 Cs/ 133 Cs in zooplankton was consistently high compared to that in ambient seawater throughout the sampling period. These phenomena cannot be explained fully by the bioaccumulation of 137 Cs in zooplankton via ambient seawater intake, the inclusion of resuspended sediment in the plankton sample, or the taxonomic composition of the plankton. Autoradiography revealed highly radioactive particles within zooplankton samples, which could be the main factor underlying the sporadic appearance of high 137 Cs concentrations in zooplankton as well as the higher ratio of 137 Cs/ 133 Cs in zooplankton than in seawater.

  4. Zooplankton Distribution in Four Western Norwegian Fjords

    NASA Astrophysics Data System (ADS)

    Gorsky, G.; Flood, P. R.; Youngbluth, M.; Picheral, M.; Grisoni, J.-M.

    2000-01-01

    A multi-instrumental array constructed in the Laboratoire d'Ecologie du Plancton Marin in Villefranche sur mer, France, named the Underwater Video Profiler (UVP), was used to investigate the vertical distribution of zooplankton in four western Norwegian fjords in the summer 1996. Six distinct zoological groups were monitored. The fauna included: (a) small crustaceans (mainly copepods), (b) ctenophores (mainly lobates), (c) siphonophores (mainly physonects), (d) a scyphomedusa Periphylla periphylla, (e) chaetognaths and (f) appendicularians. The use of the non-disturbing video technique demonstrated that the distribution of large zooplankton is heterogeneous vertically and geographically. Furthermore, the abundance of non-migrating filter feeders in the deep basins of the fjords indicates that there is enough food (living and non-living particulate organic matter) to support their dietary needs. This adaptation may be considered as a strategy for survival in fjords. Specifically, living in dark, deep water reduces visual predation and population loss encountered in the upper layer due to advective processes.

  5. Seasonal variation in the biochemical compositions of phytoplankton and zooplankton communities in the southwestern East/Japan Sea

    NASA Astrophysics Data System (ADS)

    Jo, Naeun; Kang, Jae Joong; Park, Won Gyu; Lee, Bo Ram; Yun, Mi Sun; Lee, Jang Han; Kim, Su Min; Lee, Dasom; Joo, HuiTae; Lee, Jae Hyung; Ahn, So Hyun; Lee, Sang Heon

    2017-09-01

    The macromolecular composition of phytoplankton communities and the proximate composition of zooplankton communities were measured monthly in the southwestern East/Japan Sea from April to November 2014 in order to identify seasonal changes in, and relationships among, the biochemical compositions in both phytoplankton and zooplankton. The carbohydrate content of phytoplankton was highest in June, whereas the protein content was highest in August and lipids were highest in April. Overall, carbohydrates were dominant (53.2 ± 12.5%) in the macromolecular composition of phytoplankton during the study period. This composition is believed to result from the dominance of diatoms and/or nutrient-depleted conditions. In comparison, the protein level of zooplankton was highest in November, whereas lipids were slightly higher in May than other months. Overall, proteins were the dominant organic compounds (47.9±8.6% DW) in zooplankton communities, whereas lipids were minor components (5.5±0.6% DW). The high protein content of zooplankton might be related to the abundance of copepods, whereas the low lipid content might be due to a relatively high primary production that could provide a sufficient food supply for zooplankton so that they do not require high lipid storage. A significant positive correlation (r=0.971, n=7, p<0.01) was found between the lipid compositions of phytoplankton and zooplankton during our study period with a time lag, which is consistent with the findings from previous studies. More detailed studies on the biochemical composition of phytoplankton and zooplankton are needed to better understand the East/Japan Sea ecosystem's response to the many environmental changes associated with global warming.

  6. Distribution of trace metals in surface seawater and zooplankton of the Bay of Bengal, off Rushikulya estuary, East Coast of India.

    PubMed

    Srichandan, Suchismita; Panigrahy, R C; Baliarsingh, S K; Rao B, Srinivasa; Pati, Premalata; Sahu, Biraja K; Sahu, K C

    2016-10-15

    Concentrations of trace metals such as iron (Fe), copper (Cu), zinc (Zn), cobalt (Co), nickel (Ni), manganese (Mn), lead (Pb), cadmium (Cd), chromium (Cr), arsenic (As), vanadium (V), and selenium (Se) were determined in seawater and zooplankton from the surface waters off Rushikulya estuary, north-western Bay of Bengal. During the study period, the concentration of trace metals in seawater and zooplankton showed significant spatio-temporal variation. Cu and Co levels in seawater mostly remained non-detectable. Other elements were found at higher concentrations and exhibited marked variations. The rank order distribution of trace metals in terms of their average concentration in seawater was observed as Fe>Ni>Mn>Pb>As>Zn>Cr>V>Se>Cd while in zooplankton it was Fe>Mn>Cd>As>Pb>Ni>Cr>Zn>V>Se. The bioaccumulation factor (BAF) of Fe was highest followed by Zn and the lowest value was observed with Ni. Results of correlation analysis discerned positive affinity and good relationship among the majority of the trace metals, both in seawater and zooplankton suggesting their strong affinity and coexistence. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Zooplankton species composition, abundance and biomass on the eastern Bering Sea shelf during summer: The potential role of water-column stability and nutrients in structuring the zooplankton community

    NASA Astrophysics Data System (ADS)

    Coyle, Kenneth O.; Pinchuk, Alexei I.; Eisner, Lisa B.; Napp, Jeffrey M.

    2008-08-01

    The southeastern Bering Sea sustains one of the largest fisheries in the United States, as well as wildlife resources that support valuable tourist and subsistence economies. The fish and wildlife populations in turn are sustained by a food web linking primary producers to apex predators through the zooplankton community. Recent shifts in climate toward warmer conditions may threaten these resources by altering productivity and trophic relationships in the ecosystem on the southeastern Bering Sea shelf. We examined the zooplankton community near the Pribilof Islands and on the middle shelf of the southeastern Bering Sea in summer of 1999 and 2004 to document differences and similarities in species composition, abundance and biomass by region and year. Between August 1999 and August 2004, the summer zooplankton community of the middle shelf shifted from large to small species. Significant declines were observed in the biomass of large scyphozoans ( Chrysaora melanaster), large copepods ( Calanus marshallae), arrow worms ( Sagitta elegans) and euphausiids ( Thysanoessa raschii, T. inermis) between 1999 and 2004. In contrast, significantly higher densities of the small copepods ( Pseudocalanus spp., Oithona similis) and small hydromedusae ( Euphysa flammea) were observed in 2004 relative to 1999. Stomach analyses of young-of-the-year (age 0) pollock ( Theragra chalcogramma) from the middle shelf indicated a dietary shift from large to small copepods in 2004 relative to 1999. The shift in the zooplankton community was accompanied by a 3-fold increase in water-column stability in 2004 relative to 1999, primarily due to warmer water above the thermocline, with a mean temperature of 7.3 °C in 1999 and 12.6 °C in 2004. The elevated water-column stability and warmer conditions may have influenced the zooplankton composition by lowering summer primary production and selecting for species more tolerant of a warm, oligotrophic environment. A time series of temperature from

  8. A New Trait-Based Auto-Emergent Model for Zooplankton and Confrontation with Size-Structured Observations from the Bay of Biscay

    NASA Astrophysics Data System (ADS)

    Vandromme, Pieter; Sourisseau, Marc; Huret, Martin

    2013-04-01

    Zooplankton plays a significant role in marine ecosystems bridging the gap between primary producers and top consumers and interacting with the particle flux through complex dynamics. Scarcity of data and complexity of observing zooplankton make it difficult to integrate it in biogeochemical models where it is most often formulated in a simpler manner, i.e. classic box models with usually two compartments (micro and meso/macro zooplankton). Recent advances in automatic sizing, counting and identification allow better estimates of the dynamics and distribution of zooplankton, notably through the measurement of its size structure, and for zooplankton size matter. Most zooplankton physiological rates as well as predator:prey interactions can be significantly relied to individuals size through allometric relations. Such size-dependency was used in recent models. Yet, these models were neither confronted to observations nor integrated in 3D biogeochemical models. Here we propose a newly developed model of zooplankton dynamics based on size-dependent allometric relations but which allows various diet types regardless of the size. A size and a degree of herbivory is randomly drawn for each zooplankton species generated within the model (up to 400 here, limited by actual computational costs). By generating random degree of herbivory zooplankton species of same size could have various diet (from herbivore to carnivore). Other parameters leading to various reproductive strategies or vertical migration could also be drawn randomly (not tested here). The zooplankton model is coupled to the 3D biogeochemical model MARS3D on a test case representing a simplified view of the Bay of Biscay (i.e., continental shelf, estuary, tides). The model shows auto-emergent properties with the selection of size/diet most adapted to local conditions (here offshore vs. coastal, estuary…). Then, patterns of the modeled size-structure of the zooplankton are confronted to the ones observed during

  9. Phytoplankton food quality determines time windows for successful zooplankton reproductive pulses.

    PubMed

    Vargas, Cristian A; Escribano, Rubén; Poulet, Serge

    2006-12-01

    Recruitment success at the early life stages is a critical process for zooplankton demography. Copepods often dominate the zooplankton in marine coastal zones and are prey of the majority of fish larvae. Hypotheses interpreting variations of copepod recruitment are based on the concepts of "naupliar predation," "nutritional deficiency," and "toxic effect" of diatom diets. Contradictory laboratory and field studies have reached opposite conclusions on the effects of diatoms on copepod reproductive success, blurring our view of marine food-web energy flow from diatoms to higher consumers by means of copepods. Here we report estimates of copepod feeding selectivity and reproduction in response to seasonally changing phytoplankton characteristics measured in a highly productive coastal upwelling area off the coast of central Chile. The variable phytoplankton diversity and changing food quality had a strong and highly significant impact on the feeding selectivity, reproduction, and larval survival of three indigenous copepod species. Seasonal changes in copepod feeding behavior were related to the alternating protozoan-diatom diets, mostly based on dinoflagellates and ciliates during winter and autumn (low highly unsaturated fatty acids [HUFA]/polyunsaturated fatty acids [PUFA] availability), but switched to a diet of centric and chain-forming diatoms (high HUFA/PUFA availability) during the spring/summer upwelling period. Ingestion of diatom cells induced a positive effect on egg production. However, a negative relationship was found between egg hatching success, naupliar survival, and diatom ingestion. Depending on the phytoplankton species, diets had different effects on copepod reproduction and recruitment. In consequence, it seems that the classical marine food web model does not apply to some coastal upwelling systems.

  10. Role of predation by zooplankton in transport and fate of protozoan (oo)cysts in granular activated carbon filtration.

    PubMed

    Bichai, Françoise; Barbeau, Benoit; Dullemont, Yolanda; Hijnen, Wim

    2010-02-01

    The significance of zooplankton in the transport and fate of pathogenic organisms in drinking water is poorly understood, although many hints of the role of predation in the persistence of microorganisms through water treatment processes can be found in literature. The objective of this study was to assess the impact of predation by natural zooplankton on the transport and fate of protozoan (oo)cysts in granular activated carbon (GAC) filtration process. UV-irradiated unlabelled Cryptosporidium parvum and Giardia lamblia (oo)cysts were seeded into two pilot-scale GAC filtration columns operated under full-scale conditions. In a two-week period after seeding, a reduction of free (oo)cysts retained in the filter bed was observed. Zooplankton was isolated from the filter bed and effluent water on a 30 microm net before and during the two-week period after seeding; it was enumerated and identified. Rotifers, which are potential predators of (oo)cysts, accounted for the major part of the isolated zooplankton. Analytical methods were developed to detect (oo)cysts internalized in natural zooplankton isolated from the filter bed and effluent water. Sample sonication was optimized to disrupt zooplankton organisms and release internalized microorganisms. (Oo)cysts released from zooplankton after sonication were isolated by IMS and stained (EasyStain) for microscopic counting. Both Cryptosporidium and Giardia (oo)cysts were detected in association with zooplankton in the filter bed samples as well as in the effluent of GAC filters. The results of this study suggest that predation by zooplankton can play a role in the remobilization of persistent pathogens such as Cryptosporidium and Giardia (oo)cysts retained in GAC filter beds, and consequently in the transmission of these pathogens in drinking water. Copyright 2009 Elsevier Ltd. All rights reserved.

  11. Synchronous dynamics of zooplankton competitors prevail in temperate lake ecosystems.

    PubMed

    Vasseur, David A; Fox, Jeremy W; Gonzalez, Andrew; Adrian, Rita; Beisner, Beatrix E; Helmus, Matthew R; Johnson, Catherine; Kratina, Pavel; Kremer, Colin; de Mazancourt, Claire; Miller, Elizabeth; Nelson, William A; Paterson, Michael; Rusak, James A; Shurin, Jonathan B; Steiner, Christopher F

    2014-08-07

    Although competing species are expected to exhibit compensatory dynamics (negative temporal covariation), empirical work has demonstrated that competitive communities often exhibit synchronous dynamics (positive temporal covariation). This has led to the suggestion that environmental forcing dominates species dynamics; however, synchronous and compensatory dynamics may appear at different length scales and/or at different times, making it challenging to identify their relative importance. We compiled 58 long-term datasets of zooplankton abundance in north-temperate and sub-tropical lakes and used wavelet analysis to quantify general patterns in the times and scales at which synchronous/compensatory dynamics dominated zooplankton communities in different regions and across the entire dataset. Synchronous dynamics were far more prevalent at all scales and times and were ubiquitous at the annual scale. Although we found compensatory dynamics in approximately 14% of all combinations of time period/scale/lake, there were no consistent scales or time periods during which compensatory dynamics were apparent across different regions. Our results suggest that the processes driving compensatory dynamics may be local in their extent, while those generating synchronous dynamics operate at much larger scales. This highlights an important gap in our understanding of the interaction between environmental and biotic forces that structure communities. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

  12. Impact of climate change on zooplankton communities, seabird populations and arctic terrestrial ecosystem—A scenario

    NASA Astrophysics Data System (ADS)

    Stempniewicz, Lech; Błachowiak-Samołyk, Katarzyna; Węsławski, Jan M.

    2007-11-01

    Many arctic terrestrial ecosystems suffer from a permanent deficiency of nutrients. Marine birds that forage at sea and breed on land can transport organic matter from the sea to land, and thus help to initiate and sustain terrestrial ecosystems. This organic matter initiates the emergence of local tundra communities, increasing primary and secondary production and species diversity. Climate change will influence ocean circulation and the hydrologic regime, which will consequently lead to a restructuring of zooplankton communities between cold arctic waters, with a dominance of large zooplankton species, and Atlantic waters in which small species predominate. The dominance of large zooplankton favours plankton-eating seabirds, such as the little auk ( Alle alle), while the presence of small zooplankton redirects the food chain to plankton-eating fish, up through to fish-eating birds (e.g., guillemots Uria sp.). Thus, in regions where the two water masses compete for dominance, such as in the Barents Sea, plankton-eating birds should dominate the avifauna in cold periods and recess in warmer periods, when fish-eaters should prevail. Therefore under future anthropogenic climate scenarios, there could be serious consequences for the structure and functioning of the terrestrial part of arctic ecosystems, due in part to changes in the arctic marine avifauna. Large colonies of plankton-eating little auks are located on mild mountain slopes, usually a few kilometres from the shore, whereas colonies of fish-eating guillemots are situated on rocky cliffs at the coast. The impact of guillemots on the terrestrial ecosystems is therefore much smaller than for little auks because of the rapid washing-out to sea of the guano deposited on the seabird cliffs. These characteristics of seabird nesting sites dramatically limit the range of occurrence of ornithogenic soils, and the accompanying flora and fauna, to locations where talus-breeding species occur. As a result of climate

  13. Vertical redistribution of zooplankton in an oligotrophic lake associated with reduction in ultraviolet radiation by wildfire smoke

    NASA Astrophysics Data System (ADS)

    Urmy, Samuel S.; Williamson, Craig E.; Leach, Taylor H.; Schladow, S. Geoffrey; Overholt, Erin P.; Warren, Joseph D.

    2016-04-01

    We used a natural experiment to test whether wildfire smoke induced changes in the vertical distribution of zooplankton in Lake Tahoe by decreasing incident ultraviolet radiation (UV). Fires have a variety of effects on aquatic ecosystems, but these impacts are poorly understood and have rarely been observed directly. UV is an important driver of zooplankton vertical migration, and wildfires may alter it over large spatial scales. We measured UV irradiance and the distribution of zooplankton on two successive days. On one day, smoke haze from a nearby wildfire reduced incident UV radiation by up to 9%, but not irradiance in the visible spectrum. Zooplankton responded by positioning themselves, on average, 4.1 m shallower in the lake. While a limited data set such as this requires cautious interpretation, our results suggest that smoke from wildfires can change the UV environment and distribution of zooplankton. This process may be important in drought-prone regions with increasingly frequent wildfires, and globally due to widespread biomass burning.

  14. SPATIAL PATTERNS IN ASSEMBLAGE STRUCTURES OF PELAGIC FORAGE FISH AND ZOOPLANKTON IN WESTERN LAKE SUPERIOR

    EPA Science Inventory

    This manuscript reports on the spatial distribution of zooplankton and forage fish in western Lake Superior. Fish and zooplankton assemblages are shown to differ substantially in abundance and size structure both between the open lake and nearshore regions and between two differe...

  15. Species Composition and Distribution of Zooplankton from Northeastern Sakhalin Shelf (Sea of Okhotsk)

    NASA Astrophysics Data System (ADS)

    Kasyan, V. V.

    2018-03-01

    The species composition, density, biomass, and distribution of zooplankton of the northeastern Sakhalin shelf, Sea of Okhotsk (Chaivo, Pil'tunskii, and Morskoi regions) were studied in October 2014. Zooplankton was represented by 15 taxonomic groups, which were dominated by Copepoda (13 species). The average density and biomass was highest in the Chaivo region (14112 ± 4322 ind./m3, 395 ± 107 mg/m3) and in the Pil'tunskii region (16692 ± 10707 ind./m3, 346 ± 233 mg/m3); the abundance of detected taxonomic groups was minimal (8-12). The average density and biomass of zooplankton was up to 4304 ± 2441 ind./m3, 133 ± 77 mg/m3 in the Morskoi region and increased with depth; the abundance of taxa was maximum (15). Four species of copepods made up the majority of the density and biomass of zooplankton: Acartia hudsonica, Eurytemora herdmani, Pseudocalanus newmani, and Oithona similis. In the Chaivo region, species of the genera Acartia, Eurytemora, and Oithona dominated and subdominated; in Pil'tunskii region, species of the genera Acartia and Oithona dominated and subdominated; and in the Morskoi region, species of the genera Oithona, Pseudocalanus, and Acartia dominated and subdominated.

  16. Ingestion of Microplastics by Zooplankton in the Northeast Pacific Ocean.

    PubMed

    Desforges, Jean-Pierre W; Galbraith, Moira; Ross, Peter S

    2015-10-01

    Microplastics are increasingly recognized as being widespread in the world's oceans, but relatively little is known about ingestion by marine biota. In light of the potential for microplastic fibers and fragments to be taken up by small marine organisms, we examined plastic ingestion by two foundation species near the base of North Pacific marine food webs, the calanoid copepod Neocalanus cristatus and the euphausiid Euphausia pacifia. We developed an acid digestion method to assess plastic ingestion by individual zooplankton and detected microplastics in both species. Encounter rates resulting from ingestion were 1 particle/every 34 copepods and 1/every 17 euphausiids (euphausiids > copepods; p = 0.01). Consistent with differences in the size selection of food between these two zooplankton species, the ingested particle size was greater in euphausiids (816 ± 108 μm) than in copepods (556 ± 149 μm) (p = 0.014). The contribution of ingested microplastic fibres to total plastic decreased with distance from shore in euphausiids (r (2) = 70, p = 0.003), corresponding to patterns in our previous observations of microplastics in seawater samples from the same locations. This first evidence of microplastic ingestion by marine zooplankton indicate that species at lower trophic levels of the marine food web are mistaking plastic for food, which raises fundamental questions about potential risks to higher trophic level species. One concern is risk to salmon: We estimate that consumption of microplastic-containing zooplankton will lead to the ingestion of 2-7 microplastic particles/day by individual juvenile salmon in coastal British Columbia, and ≤91 microplastic particles/day in returning adults.

  17. Zooplankton community response to the winter 2013 deep convection process in the NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Donoso, Katty; Carlotti, François; Pagano, Marc; Hunt, Brian P. V.; Escribano, Rubén.; Berline, Léo.

    2017-03-01

    The Gulf of Lion is an important area of deep convection, where intense winter vertical mixing brings nutrients up from deeper layers, promoting the largest bloom in the Mediterranean at the end of winter/early spring. The DEWEX program conducted cruises in February and April 2013 to investigate the ecosystem level impacts of deep water convection. Zooplankton data were collected through net sampling and imaging with an Underwater Vision Profiler. In winter, low zooplankton abundance and biomass were observed in the Deep Convection Zone (DCZ) and higher values on its periphery. In spring, this pattern reversed with high biomass in the DCZ and lower values on the periphery. On average for the whole area, the potential grazing impact was estimated to increase by one order of magnitude from winter to spring. In April, all areas except the DCZ incurred top-down control by zooplankton on the phytoplankton stock. In the DCZ, the chlorophyll-a values remained high despite the high zooplankton biomass and carbon demand, indicating a sustained bottom-up control. The zooplankton community composition was comparable for both periods, typified by high copepod dominance, but with some differences between the DCZ and peripheral regions. In spring the DCZ was characterized by a strong increase in herbivorous species such as Centropages typicus and Calanus helgolandicus, and an increase in the number of large zooplankton individuals. Our study indicates that the DCZ is likely an area of both enhanced energy transfer to higher trophic levels and organic matter export in the North Western Mediterranean Sea.

  18. River flow, zooplankton and dominant zooplanktivorous fish dynamics in a warm-temperate South African estuary.

    PubMed

    Mbandzi, N; Wasserman, R J; Deyzel, S H P; Vine, N G; Whitfield, A K

    2018-06-01

    The possible links between river flow, zooplankton abundance and the responses of zooplanktivorous fishes to physico-chemical and food resource changes are assessed. To this end, the seasonal abundance, distribution and diet of the estuarine round-herring Gilchristella aestuaria and Cape silverside Atherina breviceps were studied in the Kariega Estuary. Spatio-temporal differences were determined for selected physico-chemical variables, zooplankton abundance and zooplanktivorous fish abundance and distribution. Results indicated that, following a river flood event in winter (>30 m 3  s -1 ), altered physico-chemical conditions occurred throughout the estuary and depressed zooplankton stocks. Abundance of G. aestuaria was highest in spring, with this species dominant in the upper and middle zones of the estuary, while A. breviceps was dominant in summer and preferred the middle and lower zones. The catch per unit of effort of both zooplanktivores also declined significantly following the flooding, thus suggesting that these fishes are reliant on zooplankton as a primary food source for healthy populations. Copepods dominated the stomach contents of both fish species, indicating a potential for strong interspecific competition for food, particularly in the middle reaches. Temporal differences were evident in dietary overlap between the two zooplanktivorous fish species and were correlated with river flow, zooplankton availability and fish distribution. The findings of this study emphasize the close trophic linkages between zooplankton and zooplanktivorous fishes under changing estuarine environmental conditions, particularly river flow and provide important baseline information for similar studies elsewhere in South Africa and the rest of the world. © 2018 The Fisheries Society of the British Isles.

  19. Deep-water zooplankton in the Mediterranean Sea: Results from a continuous, synchronous sampling over different regions using sediment traps

    NASA Astrophysics Data System (ADS)

    Danovaro, R.; Carugati, L.; Boldrin, A.; Calafat, A.; Canals, M.; Fabres, J.; Finlay, K.; Heussner, S.; Miserocchi, S.; Sanchez-Vidal, A.

    2017-08-01

    Information on the dynamics of deep-sea biota is extremely scant particularly for long-term time series on deep-sea zooplankton. Here, we present the results of a deep-sea zooplankton investigation over one annual cycle based on samples from sediment trap moorings in three sub-basins along the Mediterranean Sea. Deep-sea zooplankton assemblages were dominated by copepods, as in shallow waters, only in the Adriatic Sea (>60% of total abundance), but not in the deep Ionian Sea, where ostracods represented >80%, neither in the deep Alboran Sea, where polychaetes were >70%. We found that deep-sea zooplankton assemblages: i) are subjected to changes in their abundance and structure over time, ii) are characterized by different dominant taxa in different basins, and iii) display clear taxonomic segregation between shallow and near-bottom waters. Zooplankton biodiversity decreases with increasing water depth, but the equitability increases. We suggest here that variations of zooplankton abundance and assemblage structure are likely influenced by the trophic condition characterizing the basins. Our findings provide new insights on this largely unknown component of the deep ocean, and suggest that changes in the export of organic matter from the photic zone, such as those expected as a consequence of global change, can significantly influence zooplankton assemblages in the largest biome on Earth.

  20. Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density

    USGS Publications Warehouse

    Kelly, Patrick T.; Craig, Nicola; Solomon, Christopher T.; Weidel, Brian C.; Zwart, Jacob A.; Jones, Stuart E.

    2016-01-01

    The observed pattern of lake browning, or increased terrestrial dissolved organic carbon (DOC) concentration, across the northern hemisphere has amplified the importance of understanding how consumer productivity varies with DOC concentration. Results from comparative studies suggest these increased DOC concentrations may reduce crustacean zooplankton productivity due to reductions in resource quality and volume of suitable habitat. Although these spatial comparisons provide an expectation for the response of zooplankton productivity as DOC concentration increases, we still have an incomplete understanding of how zooplankton respond to temporal increases in DOC concentration within a single system. As such, we used a whole-lake manipulation, in which DOC concentration was increased from 8 to 11 mg L−1 in one basin of a manipulated lake, to test the hypothesis that crustacean zooplankton production should subsequently decrease. In contrast to the spatially derived expectation of sharp DOC-mediated decline, we observed a small increase in zooplankton densities in response to our experimental increase in DOC concentration of the treatment basin. This was due to significant increases in gross primary production and resource quality (lower seston carbon-to-phosphorus ratio; C:P). These results demonstrate that temporal changes in lake characteristics due to increased DOC may impact zooplankton in ways that differ from those observed in spatial surveys. We also identified significant interannual variability across our study region, which highlights potential difficulty in detecting temporal responses of organism abundances to gradual environmental change (e.g., browning).

  1. Acoustic insights into the zooplankton dynamics of the eastern Weddell Sea

    NASA Astrophysics Data System (ADS)

    Cisewski, Boris; Strass, Volker H.

    2016-05-01

    The success of any efforts to determine the effects of climate change on marine ecosystems depends on understanding in the first instance the natural variations, which contemporarily occur on the interannual and shorter time scales. Here we present results on the environmental controls of zooplankton distribution patterns and behaviour in the eastern Weddell Sea, Southern Ocean. Zooplankton abundance and vertical migration are derived from the mean volume backscattering strength (MVBS) and the vertical velocity measured by moored acoustic Doppler current profilers (ADCPs), which were deployed simultaneously at 64°S, 66.5°S and 69°S along the Greenwich Meridian from February, 2005, until March, 2008. While these time series span a period of full three years they resolve hourly changes. A highly persistent behavioural pattern found at all three mooring locations is the synchronous diel vertical migration (DVM) of two distinct groups of zooplankton that migrate between a deep residence depth during daytime and a shallow depth during nighttime. The DVM was closely coupled to the astronomical daylight cycles. However, while the DVM was symmetric around local noon, the annual modulation of the DVM was clearly asymmetric around winter solstice or summer solstice, respectively, at all three mooring sites. DVM at our observation sites persisted throughout winter, even at the highest latitude exposed to the polar night. Since the magnitude as well as the relative rate of change of illumination is minimal at this time, we propose that the ultimate causes of DVM separated from the light-mediated proximal cue that coordinates it. In all three years, a marked change in the migration behaviour occurred in late spring (late October/early November), when DVM ceased. The complete suspension of DVM after early November is possibly caused by the combination of two factors: (1) increased availability of food in the surface mixed layer provided by the phytoplankton spring bloom, and

  2. Feeding ecology of mesopelagic zooplankton of the subtropical and subarctic North Pacific Ocean determined with fatty acid biomarkers

    NASA Astrophysics Data System (ADS)

    Wilson, S. E.; Steinberg, D. K.; Chu, F.-L. E.; Bishop, J. K. B.

    2010-10-01

    Mesopelagic zooplankton may meet their nutritional and metabolic requirements in a number of ways including consumption of sinking particles, carnivory, and vertical migration. How these feeding modes change with depth or location, however, is poorly known. We analyzed fatty acid (FA) profiles to characterize zooplankton diet and large particle (>51 μm) composition in the mesopelagic zone (base of euphotic zone -1000 m) at two contrasting time-series sites in the subarctic (station K2) and subtropical (station ALOHA) Pacific Ocean. Total FA concentration was 15.5 times higher in zooplankton tissue at K2, largely due to FA storage by seasonal vertical migrators such as Neocalanus and Eucalanus. FA biomarkers specific to herbivory implied a higher plant-derived food source at mesotrophic K2 than at oligotrophic ALOHA. Zooplankton FA biomarkers specific to dinoflagellates and diatoms indicated that diatoms, and to a lesser extent, dinoflagellates were important food sources at K2. At ALOHA, dinoflagellate FAs were more prominent. Bacteria-specific FA biomarkers in zooplankton tissue were used as an indicator of particle feeding, and peaks were recorded at depths where known particle feeders were present at ALOHA (e.g., ostracods at 100-300 m). In contrast, depth profiles of bacterial FA were relatively constant with depth at K2. Diatom, dinoflagellate, and bacterial biomarkers were found in similar proportions in both zooplankton and particles with depth at both locations, providing additional evidence that mesopelagic zooplankton consume sinking particles. Carnivory indices were higher and increased significantly with depth at ALOHA, and exhibited distinct peaks at K2, representing an increase in dependence on other zooplankton for food in deep waters. Our results indicate that feeding ecology changes with depth as well as by location. These changes in zooplankton feeding ecology from the surface through the mesopelagic zone, and between contrasting environments

  3. Food habits of Juvenile American Shad and dynamics of zooplankton in the lower Columbia River

    USGS Publications Warehouse

    Haskell, C.A.; Tiffan, K.F.; Rondorf, D.W.

    2006-01-01

    As many as 2.4 million adult American shad annually pass John Day Dam, Columbia River to spawn upriver, yet food web interactions of juvenile shad rearing in John Day Reservoir are unexplored. We collected zooplankton and conducted mid-water trawls in McNary (June-July) and John Day reservoirs (August-November) from 1994 through 1996 during the outmigration of subyearling American shad and Chinook salmon. Juvenile American shad were abundant and represented over 98% of the trawl catch in late summer. The five major taxa collected in zooplankton tows were Bosmina longirostris, Daphnia, cyclopoid cope-pods, rotifers, and calanoid copepods. We evaluated total crustacean zooplankton abundance and Daphnia biomass in relation to water temperature, flow, depth, diel period, and cross-sectional location using multiple regression. Differences in zooplankton abundance were largely due to differences in water temperature and flow. Spatial variation in total zooplankton abundance was observed in McNary Reservoir, but not in John Day Reservoir. Juvenile American shad generally fed on numerically abundant prey, despite being less preferred than larger bodied zooplankton. A decrease in cladoceran abundance and size in August coupled with large percentages of Daphnia in juvenile American shad stomachs indicated heavy planktivory. Smaller juvenile American shad primarily fed on Daphnia in August, but switched to more evasive copepods as the mean size of fish increased and Daphnia abundance declined. Because Daphnia are particularly important prey items for subyearling Chinook salmon in mainstem reservoirs in mid to late summer, alterations in the cladoceran food base is of concern for the management of outmigrating salmonids and other Columbia River fishes. ?? 2006 by the Northwest Scientific Association. All rights reserved.

  4. Bridging the gap between marine biogeochemical and fisheries sciences; configuring the zooplankton link

    NASA Astrophysics Data System (ADS)

    Mitra, Aditee; Castellani, Claudia; Gentleman, Wendy C.; Jónasdóttir, Sigrún H.; Flynn, Kevin J.; Bode, Antonio; Halsband, Claudia; Kuhn, Penelope; Licandro, Priscilla; Agersted, Mette D.; Calbet, Albert; Lindeque, Penelope K.; Koppelmann, Rolf; Møller, Eva F.; Gislason, Astthor; Nielsen, Torkel Gissel; St. John, Michael

    2014-12-01

    Exploring climate and anthropogenic impacts on marine ecosystems requires an understanding of how trophic components interact. However, integrative end-to-end ecosystem studies (experimental and/or modelling) are rare. Experimental investigations often concentrate on a particular group or individual species within a trophic level, while tropho-dynamic field studies typically employ either a bottom-up approach concentrating on the phytoplankton community or a top-down approach concentrating on the fish community. Likewise the emphasis within modelling studies is usually placed upon phytoplankton-dominated biogeochemistry or on aspects of fisheries regulation. In consequence the roles of zooplankton communities (protists and metazoans) linking phytoplankton and fish communities are typically under-represented if not (especially in fisheries models) ignored. Where represented in ecosystem models, zooplankton are usually incorporated in an extremely simplistic fashion, using empirical descriptions merging various interacting physiological functions governing zooplankton growth and development, and thence ignoring physiological feedback mechanisms. Here we demonstrate, within a modelled plankton food-web system, how trophic dynamics are sensitive to small changes in parameter values describing zooplankton vital rates and thus the importance of using appropriate zooplankton descriptors. Through a comprehensive review, we reveal the mismatch between empirical understanding and modelling activities identifying important issues that warrant further experimental and modelling investigation. These include: food selectivity, kinetics of prey consumption and interactions with assimilation and growth, form of voided material, mortality rates at different age-stages relative to prior nutrient history. In particular there is a need for dynamic data series in which predator and prey of known nutrient history are studied interacting under varied pH and temperature regimes.

  5. Community structure of zooplankton in the main entrance of Bahía Magdalena, México during 1996.

    PubMed

    Gómez-Gutiérrez, J; Palomares-García, R; Hernández-Trujillo, S; Carballido-Carranza, A

    2001-06-01

    The zooplankton community structure, including copepods, euphausiids, chaetognaths, and decapod larvae, was monitored during six circadian cycles using Bongo net (500 microns mesh net) samples from Bahía Magdalena, on the southwest coast of Baja California, México. Samples were obtained during three oceanographic surveys (March, July, and December 1996) to describe the changes in the zooplankton community structure throughout the main mouth of Bahía Magdalena. The zooplankton community structure showed strong changes with a close relation to environmental conditions. During March, a well-mixed water column with low temperature and salinity indicated an influence of the California Current water and local upwelling processes. During July, temperature increased and a wide salinity range was recorded. The stratification of the water column was intense during summer, enhancing the thermocline. The highest temperatures and salinity were recorded in December, related to the presence of the Costa Rica Coastal Current (CRCC). The thermocline deepened as water temperature increased. A typical temperate community structure with low specific richness dominated by Calanus pacificus, Nyctiphanes simplex, and Acartia clausi and high zooplankton biomass (average 9.3 and 5.5 ml 1000 m-3 respectively) during March and July shifted to a more complex tropical community structure with a low zooplankton biomass in December (average 0.37 ml 1000 m-3). The mouth of Bahía Magdalena has a vigorous exchange of water caused by tidal currents. The zooplankton community structure was not significantly different between the central part of Bahía Magdalena and the continental shelf outside the bay for all months. The results suggest a more dynamic inside-outside interaction of zooplankton assemblages than first thought.

  6. Zooplankton diel vertical migration and contribution to deep active carbon flux in the NW Mediterranean

    NASA Astrophysics Data System (ADS)

    Isla, Alejandro; Scharek, Renate; Latasa, Mikel

    2015-03-01

    The diel vertical migration (DVM) of zooplankton contributes to the biological pump transporting material from surface to deep waters. We examined the DVM of the zooplankton community in different size fractions (53-200 μm, 200-500 μm, 500-1000 μm, 1000-2000 μm and > 2000 μm) during three cruises carried out in the open NW Mediterranean Sea. We assessed their metabolic rates from empirical published relationships and estimated the active fluxes of dissolved carbon to the mesopelagic zone driven by migrant zooplankton. Within the predominantly oligotrophic Mediterranean Sea, the NW region is one of the most productive ones, with a seasonal cycle characterized by a prominent spring bloom. The study area was visited at three different phases of the seasonal cycle: during the spring bloom, the post-bloom, and strongly stratified oligotrophic conditions. We found seasonal differences in DVM, less evident during the bloom. Changes in DVM intensity were related to the composition of the zooplanktonic assemblage, which also varied between cruises. Euphausiids appeared as the most active migrants in all seasons, and their life cycle conditioned the observed pattern. Immature stages, which are unable to perform large diel vertical movements, dominated during the bloom, in contrast to the higher relative importance of migrating adults in the other two sampling periods. The amount of dissolved carbon exported was determined by the migrant zooplankton biomass, being highest during the post-bloom (2.2 mmol C respired m- 2 d- 1, and up to 3.1 mmol C exported m- 2 d- 1 when DOC release estimations are added). The active transport by diel migrants represented a substantial contribution to total carbon export to deep waters, especially under stratified oligotrophic conditions, revealing the importance of zooplankton in the biological pump operating in the study area.

  7. Grazing experiments and model simulations of the role of zooplankton in Phaeocystis food webs

    NASA Astrophysics Data System (ADS)

    Verity, P. G.

    2000-08-01

    A combined empirical and modelling study was conducted to further examine the potential importance of grazing by zooplankton in pelagic food webs in which Phaeocystis is a significant or dominant component. Laboratory experiments were designed to measure ingestion of Phaeocystis and other potential prey items which co-occur with Phaeocystis. Grazers included copepods and ciliates, and prey included Phaeocystis colonies and solitary cells, diatoms, ciliates, bacteria, and detritus. These data were expressed in the model currency of nitrogen units, and fit to hyperbolic tangent equations which included minimum prey thresholds. These equations and literature data were used to constrain a food web model whose purpose was to investigate trophic interactions rather than to mimic actual events. Nevertheless, the model output was similar to the general pattern and magnitude of development of Phaeocystis-diatom communities in some environments where they occur, e.g. north Norwegian waters. The model included three forms of nitrogen, three phytoplankton groups, bacteria, two zooplankton groups, and detritus, with detailed flows between compartments. An important component of the model was inclusion of variable prey preferences for zooplankton. The experiments and model simulations suggest several salient conclusions. Phaeocystis globosa colonies were eaten by a medium-sized copepod species, but ingestion appeared to be strongly dependent upon a proper size match between grazer and prey. If not, colonies were eaten little if at all. Phaeocystis solitary cells were ingested rapidly by ciliate microzooplankton, in agreement with prior literature observations. In contrast, detritus was eaten comparatively slowly by both ciliates and copepods. Both types of zooplankton exhibited apparent minimum prey thresholds below which grazing did not occur or was inconsequential. Model simulations implied that transitions between life cycle stages of Phaeocystis may potentially be important

  8. Regional and inter-annual variability in Atlantic zooplankton en route to the Arctic Ocean: potential effects of multi-path Atlantic water advection through Fram Strait and the Barents Sea

    NASA Astrophysics Data System (ADS)

    Kwasniewski, Slawomir; Gluchowska, Marta; Trudnowska, Emilia; Ormanczyk, Mateusz; Walczowski, Waldemar; Beszczynska-Moeller, Agnieszka

    2016-04-01

    The Arctic is among the regions where the climate change effects on ecosystem will be the most rapid and consequential, with Arctic amplification recognized as an integral part of the process. Great part of the changes are forced by advection of warm waters from the North Atlantic and the expected modifications of Arctic marine ecosystem will be induced not only by changing environmental conditions but also as a result of introducing Atlantic biota. Thus, the knowledge of physical and biological heterogeneity of Atlantic inflow is requisite for understanding the effects of climate change on biological diversity and ecosystem functioning in the Arctic. The complex and variable two-branched structure of the Atlantic Water flow via Fram Strait and the Barents Sea most likely has a strong influence on the ocean biology in these regions, especially in the pelagic realm. Zooplankton are key components of marine ecosystems which form essential links between primary producers and grazer/predator consumers, thus they are important for functioning of the biological carbon pump. Changes in zooplankton distribution and abundance may have cascading effects on ecosystem functioning, with regulatory effects on climate. Based on data collected in summers of 2012-2014, within the scope of the Polish-Norwegian PAVE research project, we investigate zooplankton distribution, abundance and selected structural characteristics of communities, in relation to water mass properties in the Atlantic Water complex flow to the Arctic Ocean. The main questions addressed here are: what are the differences in zooplankton patterns between the Fram Strait and Barents Sea branches, and how does the inter-annual variability of Atlantic Water advection relate to changes in zooplankton? The results of the investigation are precondition for foreseeing changes in the pelagic realm in the Arctic Ocean and are necessary for constructing and tuning plankton components of ecosystem models.

  9. Acoustically-inferred zooplankton distribution in relation to hydrography west of the Antarctic Peninsula

    NASA Astrophysics Data System (ADS)

    Lawson, Gareth L.; Wiebe, Peter H.; Ashjian, Carin J.; Gallager, Scott M.; Davis, Cabell S.; Warren, Joseph D.

    2004-08-01

    The relationship between the distribution of zooplankton, especially euphausiids ( Euphausia and Thysanoessa spp.), and hydrographic regimes of the Western Antarctic Peninsula continental shelf in and around Marguerite Bay was studied as part of the Southern Ocean GLOBEC program. Surveys were conducted from the RVIB N.B. Palmer in austral fall (April-June) and winter (July-August) of 2001. Acoustic, video, and environmental data were collected along 13 transect lines running across the shelf and perpendicular to the Western Antarctic Peninsula coastline, between 65°S and 70°S. Depth-stratified net tows conducted at selected locations provided ground-truthing for acoustic observations. In fall, acoustic volume backscattering strength at 120 kHz was greatest in the southern reaches of the survey area and inside Marguerite Bay, suggestive of high zooplankton and micronekton biomass in these regions. Vertically, highest backscattering was in the 150-450 m depth range, associated with modified Circumpolar Deep Water (CDW). The two deep troughs that intersect the shelf break were characterized by reduced backscattering, similar to levels observed off-shelf and indicative of lower zooplankton biomass in recent intrusions of CDW onto the continental shelf. Estimates of dynamic height suggested that geostrophic circulation likely caused both along- and across-shelf transport of zooplankton. By winter, scattering had decreased by an order of magnitude (10 dB) in the upper 300 m of the water column in most areas, and high backscattering levels were found primarily in a deep (>300 m) scattering layer present close to the bottom. The seasonal decrease is potentially explained by advection of zooplankton, vertical and horizontal movements, and mortality. Predictions of expected backscattering levels based on net samples suggested that large euphausiids were the dominant source of backscattering only at very particular locations and depths, and that copepods, siphonophores, and

  10. A Functional Approach to Zooplankton Communities in Mountain Lakes Stocked With Non-Native Sportfish Under a Changing Climate

    NASA Astrophysics Data System (ADS)

    Redmond, Laura E.; Loewen, Charlie J. G.; Vinebrooke, Rolf D.

    2018-03-01

    Cumulative impacts of multiple stressors on freshwater biodiversity and ecosystem function likely increase with elevation, thereby possibly placing alpine communities at greatest risk. Here, consideration of species traits enables stressor effects on taxonomic composition to be translated into potential functional impacts. We analyzed data for 47 taxa across 137 mountain lakes and ponds spanning large latitudinal (491 km) and elevational (1,399 m) gradients in western Canada, to assess regional and local factors of the taxonomic composition and functional structure of zooplankton communities. Multivariate community analyses revealed that small body size, clonal reproduction via parthenogenesis, and lack of pigmentation were species traits associated with both introduced non-native sportfish and also environmental conditions reflecting a warmer and drier climate—namely higher water temperatures, shallower water depths, and more chemically concentrated water. Thus, historical introductions of sportfish appear to have potentially induced greater tolerance in zooplankton communities of future climatic warming, especially in previously fishless alpine lakes. Although alpine lake communities occupied a relatively small functional space (i.e., low functional diversity), they were contained within the broader regional functional structure. Therefore, our findings point to the importance of dispersal by lower montane species to the future functional stability of alpine communities.

  11. Latitudinal distribution of zooplankton communities in the Western Pacific along 160°E during summer 2014

    NASA Astrophysics Data System (ADS)

    Sun, Dong; Wang, Chunsheng

    2017-05-01

    A total of 51 mesozooplankton samples collected with a WP2 net from 0 to 200 m depth along 160°E (4°S-46°N) in the Western Pacific from June to July 2014 were analyzed. The latitudinal distribution of mesozooplankton community structure was analyzed. The average biomass and abundance in different provinces generally increased with latitude: the biomass of zooplankton ranged from 1.18 mg DW m- 3 (11°N) to 97.81 mg DW m- 3 (45°N), and the abundance of zooplankton ranged from 45.11 ind. m- 3 (3°S) to 439.84 ind. m- 3 (41°N). The community structure of zooplankton also showed a significant latitudinal variation. At lower latitudes, calanoid copepods were the most abundant group, while cyclopoid copepods were the most abundant group at higher latitudes. Multidimensional scaling analysis of community structure and other physical/chemical/biological characteristics supported five ecological provinces in the northwestern Pacific: the Western Pacific Warm Pool Province (WARM), the North Pacific Tropical Gyre (NPTG), the North Pacific Subtropical Gyre (NPST), the Kuroshio Current Province (KURO) and the Pacific Subarctic Gyres Province (PSAG). The Kuroshio Current Province can be regarded as a transitional zone between the subarctic and northern subtropical area, and this transitional zone corresponds much more closely to the ecocline concept, rather than the ecotone concept.

  12. Zooplankton From a Reef System Under the Influence of the Amazon River Plume

    PubMed Central

    Neumann-Leitão, Sigrid; Melo, Pedro A. M. C.; Schwamborn, Ralf; Diaz, Xiomara F. G.; Figueiredo, Lucas G. P.; Silva, Andrea P.; Campelo, Renata P. S.; de Melo Júnior, Mauro; Melo, Nuno F. A. C.; Costa, Alejandro E. S. F.; Araújo, Moacyr; Veleda, Dóris R. A.; Moura, Rodrigo L.; Thompson, Fabiano

    2018-01-01

    At the mouth of the Amazon River, a widespread carbonate ecosystem exists below the river plume, generating a hard-bottom reef (∼9500 km2) that includes mainly large sponges but also rhodolith beds. The mesozooplankton associated with the pelagic realm over the reef formation was characterized, considering the estuarine plume and oceanic influence. Vertical hauls were carried out using a standard plankton net with 200 μm mesh size during September 2014. An indicator index was applied to express species importance as ecological indicators in community. Information on functional traits was gathered for the most abundant copepod species. Overall, 179 zooplankton taxa were recorded. Copepods were the richest (92 species), most diverse and most abundant group, whereas meroplankton were rare and less abundant. Species diversity (>3.0 bits.ind-1) and evenness (>0.6) were high, indicating a complex community. Small holoplanktonic species dominated the zooplankton, and the total density varied from 107.98 ind. m-3 over the reef area to 2,609.24 ind. m-3 in the estuarine plume, with a significant difference between coastal and oceanic areas. The most abundant copepods were the coastal species ithona plumifera and Clausocalanus furcatus and early stages copepodites of Paracalanidae. The holoplanktonic Oikopleura, an important producer of mucous houses, was very abundant on the reefs. The indicator species index revealed three groups: (1) indicative of coastal waters under the influence of the estuarine plume [Euterpina acutifrons, Parvocalanus crassirostris, Oikopleura (Vexillaria) dioica and Hydromedusae]; (2) characterized coastal and oceanic conditions (Clausocalanus); (3) characterized the reef system (O. plumifera). Two major copepods functional groups were identified and sorted according to their trophic strategy and coastal-oceanic distribution. The species that dominated the coastal area and the area over the rhodolith beds are indicators of the estuarine plume and

  13. Zooplankton From a Reef System Under the Influence of the Amazon River Plume.

    PubMed

    Neumann-Leitão, Sigrid; Melo, Pedro A M C; Schwamborn, Ralf; Diaz, Xiomara F G; Figueiredo, Lucas G P; Silva, Andrea P; Campelo, Renata P S; de Melo Júnior, Mauro; Melo, Nuno F A C; Costa, Alejandro E S F; Araújo, Moacyr; Veleda, Dóris R A; Moura, Rodrigo L; Thompson, Fabiano

    2018-01-01

    At the mouth of the Amazon River, a widespread carbonate ecosystem exists below the river plume, generating a hard-bottom reef (∼9500 km 2 ) that includes mainly large sponges but also rhodolith beds. The mesozooplankton associated with the pelagic realm over the reef formation was characterized, considering the estuarine plume and oceanic influence. Vertical hauls were carried out using a standard plankton net with 200 μm mesh size during September 2014. An indicator index was applied to express species importance as ecological indicators in community. Information on functional traits was gathered for the most abundant copepod species. Overall, 179 zooplankton taxa were recorded. Copepods were the richest (92 species), most diverse and most abundant group, whereas meroplankton were rare and less abundant. Species diversity (>3.0 bits.ind -1 ) and evenness (>0.6) were high, indicating a complex community. Small holoplanktonic species dominated the zooplankton, and the total density varied from 107.98 ind. m -3 over the reef area to 2,609.24 ind. m -3 in the estuarine plume, with a significant difference between coastal and oceanic areas. The most abundant copepods were the coastal species ithona plumifera and Clausocalanus furcatus and early stages copepodites of Paracalanidae. The holoplanktonic Oikopleura , an important producer of mucous houses, was very abundant on the reefs. The indicator species index revealed three groups: (1) indicative of coastal waters under the influence of the estuarine plume [ Euterpina acutifrons, Parvocalanus crassirostris, Oikopleura (Vexillaria) dioica and Hydromedusae]; (2) characterized coastal and oceanic conditions ( Clausocalanus ); (3) characterized the reef system ( O. plumifera ). Two major copepods functional groups were identified and sorted according to their trophic strategy and coastal-oceanic distribution. The species that dominated the coastal area and the area over the rhodolith beds are indicators of the

  14. Use of zooplankton to assess the movement and distribution of alewife (Alosa pseudoharengus) in south-central Lake Ontario in spring

    USGS Publications Warehouse

    O'Gorman, Robert; Mills, Edward L.; DeGisi, Joe

    1991-01-01

    Data from assessments of fish and zooplankton conducted during April and May-June 1986-88 in south-central Lake Ontario were examined for evidence that zooplankton size structure can be used to follow the movement of alewife (Alosa pseudoharengus). The spring influx of alewife into nearshore waters was linked with water temperature and coincided with a decline in the mean length of crustacean zooplankton and the virtual disappearance of zooplankters a?Y 0.9 mm. Alewife moving inshore to spawn fed heavily on the largest zooplankters, negating the possibility that changes in zooplankton size were wholly a response to seasonal recruitment as waters warm and the competition shifts to Bosmina. Offshore, there was usually no significant (P < 0.05) change in mean lengths of zooplankton in the upper water column between April and May-June, and zooplankters a?Y 0.9 mm always remained abundant, suggesting that few alewife were there from April through mid-June. We conclude that in large freshwater lakes where a planktivore is abundant, yet spatially concentrated, changes in size of crustacean zooplankton can facilitate understanding of the fish's movement and distribution.

  15. Methyl mercury uptake by diverse marine phytoplankton and trophic transfer to zooplankton

    NASA Astrophysics Data System (ADS)

    Lee, C. S.; Fisher, N. S.

    2014-12-01

    While it is well known that methylmercury (MeHg) biomagnifies in aquatic food chains, few studies have quantified its bioaccumulation in marine phytoplankton from seawater, even though that is overwhelmingly the largest bioaccumulation step. Aquatic animals acquire MeHg mainly from dietary exposure and it is important to evaluate the bioaccumulation of this compound in planktonic organisms that form the base of marine food webs. We used a gamma-emitting radioisotope, 203Hg, to assess the rate and extent of MeHg uptake in marine diatoms, dinoflagellates, coccolithophores, cryptophytes chlorophytes, and cyanobacteria held in unialgal cultures under varying temperature and light conditions. For experimental conditions in which the dissolved MeHg was at 300 pM, the uptake rates in all species ranged from 0.004 to 0.75 amol Hg μm-3 cell volume d-1 and reached steady state within 2 d. Volume concentration factors (VCFs) ranged from 0.4 to 60 x 105 for the different species. Temperature and light conditions had no direct effect on cellular MeHg uptake but ultimately affected growth of the cells, resulting in greater suspended particulate matter and associated MeHg. VCFs strongly correlated with cell surface area to volume ratios in all species. Assimilation efficiencies of MeHg from phytoplankton food (Thalassiosira pseudonana, Dunaliella tertiolecta and Rhodomonas salina) in a marine copepod grazer (Acartia tonsa) ranged from 74 to 92%, directly proportional to the cytoplasmic partitioning of MeHg in the phytoplankton cells. MeHg uptake in copepods from the aqueous phase was low and modeling shows that nearly all the MeHg acquired by this zooplankter is from diet. Herbivorous zooplankton can be an important link from phytoplankton at the base of the food web to fish higher in the food chain.

  16. Spatial patterns in assemblage structures of pelagic forage fish and zooplankton in western Lake Superior

    USGS Publications Warehouse

    Johnson, Timothy B.; Hoff, Michael H.; Trebitz, Anett S.; Bronte, Charles R.; Corry, Timothy D.; Kitchell, James F.; Lozano, Stephen J.; Mason, Doran M.; Scharold, Jill V.; Schram, Stephen T.; Schreiner, Donald R.

    2004-01-01

    We assessed abundance, size, and species composition of forage fish and zooplankton communities of western Lake Superior during August 1996 and July 1997. Data were analyzed for three ecoregions (Duluth-Superior, Apostle Islands, and the open lake) differing in bathymetry and limnological and biological patterns. Zooplankton abundance was three times higher in the Duluth-Superior and Apostle Islands regions than in the open lake due to the large numbers of rotifers. Copepods were far more abundant than Cladocera in all ecoregions. Mean zooplankton size was larger in the open lake due to dominance by large calanoid copepods although size of individual taxa was similar among ecoregions. Forage fish abundance and biomass was highest in the Apostle Islands region and lowest in the open lake ecoregion. Lake herring (Coregonus artedi), rainbow smelt (Osmerus mordax) and deepwater ciscoes (Coregonus spp.) comprised over 90% of the abundance and biomass of fishes caught in midwater trawls and recorded with hydroacoustics. Growth and condition of fish was good, suggesting they were not resource limited. Fish and zooplankton assemblages differed among the three ecoregions of western Lake Superior, due to a combination of physical and limnological factors related to bathymetry and landscape position.

  17. Evaluation of the Zooplankton Community of Livingston Reservoir, Texas, as Related to Paddlefish Food Resources

    DTIC Science & Technology

    1993-12-01

    EVALUATION OF THE ZOOPLANKTON COMMUNITY OF LIVINGSTON RESERVOIR. TEXAS, AS RELATED TO PADDLEFISH FOOD RESOURCES A Thesis by CASEY KENNETH MOORE...OF LIVINGSTON RESERVOIR, TEXAS. AS RELATED TO PADDLEFISH FOOD RESOURCES A Thesis by CASEY KENNETH MOORE Submitted to Texas A&M University in partial...Fisheries Sciences iii ABSTRACT Evaluation of the Zooplankton Community of Livingston Reservoir, Texas, as Related to Paddlefish Food Resources

  18. Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton

    PubMed Central

    Corgnati, Lorenzo; Marini, Simone; Mazzei, Luca; Ottaviani, Ennio; Aliani, Stefano; Conversi, Alessandra; Griffa, Annalisa

    2016-01-01

    Marine plankton abundance and dynamics in the open and interior ocean is still an unknown field. The knowledge of gelatinous zooplankton distribution is especially challenging, because this type of plankton has a very fragile structure and cannot be directly sampled using traditional net based techniques. To overcome this shortcoming, Computer Vision techniques can be successfully used for the automatic monitoring of this group.This paper presents the GUARD1 imaging system, a low-cost stand-alone instrument for underwater image acquisition and recognition of gelatinous zooplankton, and discusses the performance of three different methodologies, Tikhonov Regularization, Support Vector Machines and Genetic Programming, that have been compared in order to select the one to be run onboard the system for the automatic recognition of gelatinous zooplankton. The performance comparison results highlight the high accuracy of the three methods in gelatinous zooplankton identification, showing their good capability in robustly selecting relevant features. In particular, Genetic Programming technique achieves the same performances of the other two methods by using a smaller set of features, thus being the most efficient in avoiding computationally consuming preprocessing stages, that is a crucial requirement for running on an autonomous imaging system designed for long lasting deployments, like the GUARD1. The Genetic Programming algorithm has been installed onboard the system, that has been operationally tested in a two-months survey in the Ligurian Sea, providing satisfactory results in terms of monitoring and recognition performances. PMID:27983638

  19. A review of zooplankton investigations of the Black Sea over the last decade

    NASA Astrophysics Data System (ADS)

    Kideys, Ahmet E.; Kovalev, Alexander V.; Shulman, Gregory; Gordina, Anna; Bingel, Ferit

    2000-03-01

    Investigations performed in the last decade indicate that there have been important changes in the zooplankton composition and structure in the Black Sea. However, contrasting events taking place in different regions of the Black Sea indicate a non-uniform structure of its ecosystem. Several fodder zooplankton species have either disappeared from or substantially decreased in number at different sampling sites of the Black Sea over the last one or two decades. Some other species adapted to thrive in eutrophic conditions have either appeared or increased in quantity. Meanwhile the biomass of the fodder zooplankton has also fluctuated considerably through the years. However, there seems to be a reverse trend in the long-term variation of fodder zooplankton between the shallow western and deep eastern areas. Over the last few decades the abundance of fish larvae has decreased significantly when compared either to past records or with larval abundances of other seas. This was shown to be due mainly to malnutrition of larvae. One of the most striking changes in the ichthyoplankton has been the shift in the spawning areas of the main fish species, the anchovy Engraulis encrasicolus from the northwestern to the southeastern Black Sea. Even the invading ctenophore Mnemiopsis were found to be starving. The condition of other species ( Calanus euxinus and Pleurobrachia pileus) disclosed the fact that cyclonic regions where chlorophyll and nutrient concentrations are high, provide better nutrition than anticyclonic regions.

  20. Predator evasion in zooplankton is suppressed by polyunsaturated fatty acid limitation.

    PubMed

    Brzeziński, Tomasz; von Elert, Eric

    2015-11-01

    Herbivorous zooplankton avoid size-selective predation by vertical migration to a deep, cold water refuge. Adaptation to low temperatures in planktonic poikilotherms depends on essential dietary lipids; the availability of these lipids often limits growth and reproduction of zooplankton. We hypothesized that limitation by essential lipids may affect habitat preferences and predator avoidance behavior in planktonic poikilotherms. We used a liposome supplementation technique to enrich the green alga Scenedesmus obliquus and the cyanobacterium Synecchococcus elongatus with the essential lipids, cholesterol and eicosapentaenoic acid (EPA), and an indoor system with a stratified water-column (plankton organ) to test whether the absence of these selected dietary lipids constrains predator avoidance (habitat preferences) in four species of the key-stone pelagic freshwater grazer Daphnia. We found that the capability of avoiding fish predation through habitat shift to the deeper and colder environment was suppressed in Daphnia unless the diet was supplemented with EPA; however, the availability of cholesterol did not affect habitat preferences of the tested taxa. Thus, their ability to access a predator-free refuge and the outcome of predator-prey interactions depends upon food quality (i.e. the availability of an essential fatty acid). Our results suggest that biochemical food quality limitation, a bottom-up factor, may affect the top-down control of herbivorous zooplankton.

  1. Acoustic Scattering Models of Zooplankton and Microstructure

    DTIC Science & Technology

    1999-09-30

    1998, a remotely operated vehicle was used to deploy acoustic transducers so that the acoustic scattering by siphonophores , a gas-bearing animal, could...their high frequency acoustics systems. 4) In addition, we have identified two types of zooplankton ( siphonophores and pteropods) that have high...Benfield, P.H. Wiebe, and D. Chu, 1999. “In situ measurements of acoustic target strengths of siphonophores ,” Proceedings of the 2nd EAA

  2. Effects of nutrients and zooplankton on the phytoplankton community structure in Marudu Bay

    NASA Astrophysics Data System (ADS)

    Tan, Kar Soon; Ransangan, Julian

    2017-07-01

    Current study was carried out to provide a better understanding on spatial and temporal variations in the phytoplankton community structure in Marudu Bay, an important nursery ground for fishery resources within the Tun Mustapha Marine Park and Coral Triangle Initiative, and their relationship with environmental variables. Samplings were conducted monthly from April 2014 to April 2015 in Marudu Bay, Malaysia. Water samples were collected for nutrients analysis, zooplankton and phytoplankton counting. Moreover, the in situ environmental parameters were also examined. The field study showed a total of forty seven phytoplankton genera, representative of 33 families were identified. The nutrient concentrations in Marudu Bay was low (mesotrophic) throughout the year, where the phytoplankton community was often dominated by Chaetoceros spp. and Bacteriastrum spp. In general, increase in nitrate concentration triggered the bloom of centric diatom, Chaetoceros spp. and Bacteriastrum spp. in Marudu Bay. However, the bloom of these phytoplankton taxa did not occur in the presence of high ammonia concentration. In addition, high abundance of zooplankton also a limiting factor of the phytoplankton blooms particularly at end of southwest monsoon. High silica concentration promoted the growth of pennate diatoms, Proboscia spp. and Thallassionema spp., but the depletion of silica quickly terminated the bloom. Interestingly, our study showed that Chaetoceros spp., tolerated silica depletion condition, but the average cell size of this taxon reduced significantly. In summary, the phytoplankton community structure in mesotrophic environment is more sensitive to the changes in zooplankton abundance, nutrient concentration and its ratio than that in nutrient rich environments. This study also recommends that bivalve farming at industrial scale is not recommended in Marudu Bay because it potentially depletes the primary productivity hence jeopardizing the availability of live food for

  3. Some ecological implications of a neem (azadirachtin) insecticide disturbance to zooplankton communities in forest pond enclosures.

    PubMed

    Kreutzweiser, David P; Sutton, Trent M; Back, Richard C; Pangle, Kevin L; Thompson, Dean G

    2004-04-28

    A neem-based insecticide, Neemix 4.5, was applied to forest pond enclosures at concentrations of 10, 17, and 28 microg l(-1) azadirachtin (the active ingredient). At these test concentrations, significant, concentration-dependent reductions in numbers of adult copepods were observed, but immature copepod and cladoceran populations were unaffected. There was no evidence of recovery of adult copepods within the sampling season (May to October). The ecological significance of this disturbance to the zooplankton community was examined by determining biomass as a measure of food availability for higher predators, plankton community respiration, dissolved oxygen (DO) concentrations, and conductivity as functional indicators of ecosystem stress, and zooplankton food web stability as a measure of effects on trophic structure. The selective removal or reduction of adult copepods was sufficient to measurably reduce total zooplankton biomass for several weeks mid-season. During the period of maximal impact (about 4-9 weeks after the applications), total plankton community respiration was significantly reduced, and this appeared to contribute to significant, concentration-dependent increases in dissolved oxygen and decreases in conductivity among treated enclosures. The reductions in adult copepods resulted in negative effects on zooplankton food web stability through eliminations of a trophic link and reduced interactions and connectance. Comparing the results here to those from a previous study with tebufenozide, which was selectively toxic to cladocerans and had little effect on food web stability, indicates that differential sensitivity among taxa can influence the ecological significance of pesticide effects on zooplankton communities.

  4. Zooplankton variability and larval striped bass foraging: Evaluating potential match/mismatch regulation

    USGS Publications Warehouse

    Chick, J.H.; Van Den Avyle, M.J.

    1999-01-01

    We quantified temporal and spatial variability of zooplankton in three potential nursery sites (river, transition zone, lake) for larval striped bass (Morone saxatilis) in Lake Marion, South Carolina, during April and May 1993-1995. In two of three years, microzooplankton (rotifers and copepod nauplii) density was significantly greater in the lake site than in the river or transition zone. Macrozooplankton (>200 ??m) composition varied among the three sites in all years with adult copepods and cladocerans dominant at the lake, and juvenile Corbicula fluminea dominant at the river and transition zone. Laboratory feeding experiments, simulating both among-site (site treatments) and within-site (density treatments) variability, were conducted in 1995 to quantify the effects of the observed zooplankton variability on foraging success of larval striped bass. A greater proportion of larvae fed in the lake than in the river or transition-zone treatments across all density treatments: mean (x), 10x and 100x. Larvae also ingested significantly more dry mass of prey in the lake treatment in both the mean and 10x density treatments. Field zooplankton and laboratory feeding data suggest that both spatial and temporal variability of zooplankton influence larval striped bass foraging. Prey density levels that supported successful foraging in our feeding experiments occurred in the lake during late April and May in 1994 and 1995 but were never observed in the river or transition zone. Because the rivers flowing into Lake Marion are regulated, it may be possible to devise flow management schemes that facilitate larval transport to the lake and thereby increase the proportion of larvae matched to suitable prey resources.

  5. Potential acidification impacts on zooplankton in CCS leakage scenarios.

    PubMed

    Halsband, Claudia; Kurihara, Haruko

    2013-08-30

    Carbon capture and storage (CCS) technologies involve localized acidification of significant volumes of seawater, inhabited mainly by planktonic species. Knowledge on potential impacts of these techniques on the survival and physiology of zooplankton, and subsequent consequences for ecosystem health in targeted areas, is scarce. The recent literature has a focus on anthropogenic greenhouse gas emissions into the atmosphere, leading to enhanced absorption of CO2 by the oceans and a lowered seawater pH, termed ocean acidification. These studies explore the effects of changes in seawater chemistry, as predicted by climate models for the end of this century, on marine biota. Early studies have used unrealistically severe CO2/pH values in this context, but are relevant for CCS leakage scenarios. Little studied meso- and bathypelagic species of the deep sea may be especially vulnerable, as well as vertically migrating zooplankton, which require significant residence times at great depths as part of their life cycle. Copyright © 2013 Elsevier Ltd. All rights reserved.

  6. Temporal Variability of Zooplankton (2000-2013) in the Levantine Sea: Significant Changes Associated to the 2005-2010 EMT-like Event?

    PubMed Central

    Ouba, Anthony; Abboud-Abi Saab, Marie; Stemmann, Lars

    2016-01-01

    In this study, we investigated, for the first time, the potential impact of environmental changes on zooplankton abundance over a fourteen year period (2000–2013) at an offshore station in the Eastern Mediterranean Sea (the Levantine basin, offshore Lebanon). Samples were collected monthly and analyzed using the semi-automated system ZooScan. Salinity, temperature and phytoplankton abundance (nano and microphytoplankton) were also measured. Results show no significant temporal trend in sea surface temperature over the years. Between 2005–2010, salinity in the upper layer (0–80 m) of the Levantine basin increased (~0.3°C). During this 5 year period, total zooplankton abundance significantly increased. These modifications were concomitant to the activation of Aegean Sea as a source of dense water formation as part of the “Eastern Mediterranean Transient-like” event. The results of the present study suggested that zooplankton benefited from enhanced phytoplankton production during the mixing years of the event. Changes in the phenology of some taxa were observed accordingly with a predominantly advanced peak of zooplankton abundance. In conclusion, long-term changes in zooplankton abundance were related to the Levantine thermohaline circulation rather than sea surface warming. Sampling must be maintained to assess the impact of long-term climate change on zooplankton communities. PMID:27459093

  7. Bacterial bioluminescence as a lure for marine zooplankton and fish.

    PubMed

    Zarubin, Margarita; Belkin, Shimshon; Ionescu, Michael; Genin, Amatzia

    2012-01-17

    The benefits of bioluminescence for nonsymbiotic marine bacteria have not been elucidated fully. One of the most commonly cited explanations, proposed more than 30 y ago, is that bioluminescence augments the propagation and dispersal of bacteria by attracting fish to consume the luminous material. This hypothesis, based mostly on the prevalence of luminous bacteria in fish guts, has not been tested experimentally. Here we show that zooplankton that contacts and feeds on the luminescent bacterium Photobacterium leiognathi starts to glow, and demonstrate by video recordings that glowing individuals are highly vulnerable to predation by nocturnal fish. Glowing bacteria thereby are transferred to the nutritious guts of fish and zooplankton, where they survive digestion and gain effective means for growth and dispersal. Using bioluminescence as bait appears to be highly beneficial for marine bacteria, especially in food-deprived environments of the deep sea.

  8. Spatio-temporal variability of the North Sea cod recruitment in relation to temperature and zooplankton.

    PubMed

    Nicolas, Delphine; Rochette, Sébastien; Llope, Marcos; Licandro, Priscilla

    2014-01-01

    The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s and early 1990s. We tested whether the observed changes in recruits distribution could be related with direct (i.e. temperature) and/or indirect (i.e. changes in the quantity and quality of zooplankton prey) effects of climate variability. The analyses were based on spatially-resolved time series, i.e. sea surface temperature (SST) from the Hadley Center and zooplankton records from the Continuous Plankton Recorder Survey. We showed that spring SST increase was the main driver for the most recent decrease in cod recruitment. The late 1990s were also characterized by relatively low total zooplankton biomass, particularly of energy-rich zooplankton such as the copepod Calanus finmarchicus, which have further contributed to the decline of North Sea cod recruitment. Long-term spatially-resolved observations were used to produce regional distribution models that could further be used to predict the abundance of North Sea cod recruits based on temperature and zooplankton food availability.

  9. Spatio-Temporal Variability of the North Sea Cod Recruitment in Relation to Temperature and Zooplankton

    PubMed Central

    Nicolas, Delphine; Rochette, Sébastien; Llope, Marcos; Licandro, Priscilla

    2014-01-01

    The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s and early 1990s. We tested whether the observed changes in recruits distribution could be related with direct (i.e. temperature) and/or indirect (i.e. changes in the quantity and quality of zooplankton prey) effects of climate variability. The analyses were based on spatially-resolved time series, i.e. sea surface temperature (SST) from the Hadley Center and zooplankton records from the Continuous Plankton Recorder Survey. We showed that spring SST increase was the main driver for the most recent decrease in cod recruitment. The late 1990s were also characterized by relatively low total zooplankton biomass, particularly of energy-rich zooplankton such as the copepod Calanus finmarchicus, which have further contributed to the decline of North Sea cod recruitment. Long-term spatially-resolved observations were used to produce regional distribution models that could further be used to predict the abundance of North Sea cod recruits based on temperature and zooplankton food availability. PMID:24551103

  10. Zooplankton Gut Passage Mobilizes Lithogenic Iron for Ocean Productivity.

    PubMed

    Schmidt, Katrin; Schlosser, Christian; Atkinson, Angus; Fielding, Sophie; Venables, Hugh J; Waluda, Claire M; Achterberg, Eric P

    2016-10-10

    Iron is an essential nutrient for phytoplankton, but low concentrations limit primary production and associated atmospheric carbon drawdown in large parts of the world's oceans [1, 2]. Lithogenic particles deriving from aeolian dust deposition, glacial runoff, or river discharges can form an important source if the attached iron becomes dissolved and therefore bioavailable [3-5]. Acidic digestion by zooplankton is a potential mechanism for iron mobilization [6], but evidence is lacking. Here we show that Antarctic krill sampled near glacial outlets at the island of South Georgia (Southern Ocean) ingest large amounts of lithogenic particles and contain 3-fold higher iron concentrations in their muscle than specimens from offshore, which confirms mineral dissolution in their guts. About 90% of the lithogenic and biogenic iron ingested by krill is passed into their fecal pellets, which contain ∼5-fold higher proportions of labile (reactive) iron than intact diatoms. The mobilized iron can be released in dissolved form directly from krill or via multiple pathways involving microbes, other zooplankton, and krill predators. This can deliver substantial amounts of bioavailable iron and contribute to the fertilization of coastal waters and the ocean beyond. In line with our findings, phytoplankton blooms downstream of South Georgia are more intensive and longer lasting during years with high krill abundance on-shelf. Thus, krill crop phytoplankton but boost new production via their nutrient supply. Understanding and quantifying iron mobilization by zooplankton is essential to predict ocean productivity in a warming climate where lithogenic iron inputs from deserts, glaciers, and rivers are increasing [7-10]. Copyright © 2016 Elsevier Ltd. All rights reserved.

  11. Cyanobacteria dominance influences resource use efficiency and community turnover in phytoplankton and zooplankton communities.

    PubMed

    Filstrup, Christopher T; Hillebrand, Helmut; Heathcote, Adam J; Harpole, W Stanley; Downing, John A

    2014-04-01

    Freshwater biodiversity loss potentially disrupts ecosystem services related to water quality and may negatively impact ecosystem functioning and temporal community turnover. We analysed a data set containing phytoplankton and zooplankton community data from 131 lakes through 9 years in an agricultural region to test predictions that plankton communities with low biodiversity are less efficient in their use of limiting resources and display greater community turnover (measured as community dissimilarity). Phytoplankton resource use efficiency (RUE = biomass per unit resource) was negatively related to phytoplankton evenness (measured as Pielou's evenness), whereas zooplankton RUE was positively related to phytoplankton evenness. Phytoplankton and zooplankton RUE were high and low, respectively, when Cyanobacteria, especially Microcystis sp., dominated. Phytoplankton communities displayed slower community turnover rates when dominated by few genera. Our findings, which counter findings of many terrestrial studies, suggest that Cyanobacteria dominance may play important roles in ecosystem functioning and community turnover in nutrient-enriched lakes. © 2014 John Wiley & Sons Ltd/CNRS.

  12. Arctic complexity: a case study on diel vertical migration of zooplankton

    PubMed Central

    Berge, Jørgen; Cottier, Finlo; Varpe, Øystein; Renaud, Paul E.; Falk-Petersen, Stig; Kwasniewski, Sawomir; Griffiths, Colin; Søreide, Janne E.; Johnsen, Geir; Aubert, Anais; Bjærke, Oda; Hovinen, Johanna; Jung-Madsen, Signe; Tveit, Martha; Majaneva, Sanna

    2014-01-01

    Diel vertical migration (DVM) of zooplankton is a global phenomenon, characteristic of both marine and limnic environments. At high latitudes, patterns of DVM have been documented, but rather little knowledge exists regarding which species perform this ecologically important behaviour. Also, in the Arctic, the vertically migrating components of the zooplankton community are usually regarded as a single sound scattering layer (SSL) performing synchronized patterns of migration directly controlled by ambient light. Here, we present evidence for hitherto unknown complexity of Arctic marine systems, where zooplankton form multiple aggregations through the water column seen via acoustics as distinct SSLs. We show that while the initiation of DVM during the autumnal equinox is light mediated, the vertical positioning of the migrants during day is linked more to the thermal characteristics of water masses than to irradiance. During night, phytoplankton biomass is shown to be the most important factor determining the vertical positioning of all migrating taxa. Further, we develop a novel way of representing acoustic data in the form of a Sound Image (SI) that enables a direct comparison of the relative importance of each potential scatterer based upon the theoretical contribution of their backscatter. Based on our comparison of locations with contrasting hydrography, we conclude that a continued warming of the Arctic is likely to result in more complex ecotones across the Arctic marine system. PMID:25221372

  13. Abundance, composition, and distribution of crustacean zooplankton in relation to hypolimnetic oxygen depletion in west-central Lake Erie

    USGS Publications Warehouse

    Heberger, Roy F.; Reynolds, James B.

    1977-01-01

    Samples of crustacean zooplankton were collected monthly in west-central Lake Erie in April and June to October 1968, and in July and August 1970, before and during periods of hypolimnetic dissolved oxygen (DO) depletion. The water column at offshore stations was thermally stratified from June through September 1968, and the hypolimnion contained no DO in mid-August of 1968 or 1970. Composition, abundance, and vertical distribution of crustacean zooplankton changed coincidentally with oxygen depletion. From July to early August, zooplankton abundance dropped 79% in 1968 and 50% in 1970. The declines were attributed largely to a sharp decrease in abundance of planktonic Cyclops bicuspidatus thomasi. Zooplankton composition shifted from mainly cyclopoid copepods in July to mainly cladocerans and copepod nauplii in middle to late August. We believe that mortality of adults and dormancy of copepodites in response to anoxia was the probable reason for the late summer decline in planktonic C. b. thomasi.

  14. Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic

    PubMed Central

    Utne, Kjell Rong; Jansen, Teunis; Huse, Geir

    2018-01-01

    The present study uses bioenergetics modeling to estimate the annual consumption of the main zooplankton groups by some of the most commercially important planktivorous fish stocks in the Northeast Atlantic, namely Norwegian spring-spawning (NSS) herring (Clupea harengus), blue whiting (Micromesistius poutassou) and NEA mackerel (Scomber scombrus). The data was obtained from scientific surveys in the main feeding area (Norwegian Sea) in the period 2005–2010. By incorporating novel information about ambient temperature, seasonal growth and changes in the diet from stomach content analyses, annual consumption of the different zooplankton groups by pelagic fish is estimated. The present study estimates higher consumption estimates than previous studies for the three species and suggests that fish might have a greater impact on the zooplankton community as foragers. This way, NEA mackerel, showing the highest daily consumption rates, and NSS herring, annually consume around 10 times their total biomass, whereas blue whiting consume about 6 times their biomass in zooplankton. The three species were estimated to consume an average of 135 million (M) tonnes of zooplankton each year, consisting of 53–85 M tonnes of copepods, 20–32 M tonnes of krill, 8–42 M tonnes of appendicularians and 0.2–1.2 M tonnes of fish, depending on the year. For NSS herring and NEA mackerel the main prey groups are calanoids and appendicularians, showing a peak in consumption during June and June–July, respectively, and suggesting high potential for inter-specific feeding competition between these species. In contrast, blue whiting maintain a low consumption rate from April to September, consuming mainly larger euphausiids. Our results suggest that the three species can coexist regardless of their high abundance, zooplankton consumption rates and overlapping diet. Accordingly, the species might have niche segregation, as they are species specific, showing annual and inter

  15. [Effects of temperature increase on zooplankton size spectra in thermal discharge seawaters near a power plant, China].

    PubMed

    Yu, Jing; Zhu, Yi Feng; Dai, Mei Xia; Lin, Xia; Mao, Shuo Qian

    2017-05-18

    Utilizing the plankton 1 (505 Μm), 2 (160 Μm), 3 (77 Μm) nets to seasonally collect zooplankton samples at 10 stations and the corresponding abundance data was obtained. Based on individual zooplankton biovolume, size groups were classified to test the changes in spatiotemporal characteristics of both Sheldon and normalized biovolume size spectra in thermal discharge seawaters near the Guohua Power Plant, so as to explore the effects of temperature increase on zooplankton size spectra in the seawaters. The results showed that the individual biovolume of zooplankton ranged from 0.00012 to 127.0 mm 3 ·ind -1 , which could be divided into 21 size groups, and corresponding logarithmic ranges were from -13.06 to 6.99. According to Sheldon size spectra, the predominant species to form main peaks of the size spectrum in different months were Copepodite larvae, Centropages mcmurrichi, Calanus sinicus, fish larvae, Sagitta bedoti, Sagitta nagae and Pleurobrachia globosa, and minor peaks mostly consisted of individuals with smaller larvae, Cyclops and Paracalanus aculeatus. In different warming sections, Copepodite larvae, fish eggs and Cyclops were mostly unaffected by the temperature increase, while the macrozooplankton such as S. bedoti, S. nagae, P. globosa, C. sinicus and Beroe cucumis had an obvious tendency to avoid the outfall of the power plant. Based on the results of normalized size spectra, the intercepts from low to high occurred in November, February, May and August, respectively. At the same time, the minimum slope was found in February, and similarly bigger slopes were observed in May and August. These results indicated that the proportion of small zooplankton was highest in February, while the proportions of the meso- and macro-zooplankton were relatively high in May and August. Among different sections, the slope in the 0.2 km section was minimum, which increased with the increase of section distance to the outfall. The result obviously demonstrated

  16. FORAGE FISH AND ZOOPLANKTON COMMUNITY COMPOSITION IN WESTERN LAKE SUPERIOR

    EPA Science Inventory

    We assessed the abundance, size, and species composition of the fish and zooplankton communities of western Lake Superior during 1996 and 1997. Data were analyzed for 3 ecoregions (Duluth-Superior (1), Apostle Islands (2), Minnesota coast (3) differing in lake bathymetry, phsiodo...

  17. Coherence of long-term variations of zooplankton in two sectors of the California Current System

    NASA Astrophysics Data System (ADS)

    Lavaniegos, Bertha E.; Ohman, Mark D.

    2007-10-01

    We analyzed long-term (56-year) variations in springtime biomass of the zooplankton of the California Current System from two primary regions sampled by CalCOFI: Southern California (SC) and Central California (CC) waters. All organisms were enumerated from the plankton samples and converted to organic carbon biomass using length-carbon relationships, then aggregated into 19 major taxa. Planktonic copepods dominate the carbon biomass in both SC (59%) and CC (46%), followed by euphausiids (18% and 25% of mean biomass in SC and CC, respectively). Pelagic tunicates, especially salps and doliolids, constituted a higher fraction of the biomass in CC (13%) than in SC (5%). There was no long-term trend detectable in total zooplankton carbon biomass, in marked contrast to a decline in zooplankton displacement volume in both regions. The difference between these biomass metrics is accounted for by a long-term decline in pelagic tunicates (particularly salps), which have a relatively high ratio of biovolume:carbon. The decline in pelagic tunicates was accompanied by a long-term increase in water column density stratification. No other taxa showed a decline over the duration of the study, apart from salps and pyrosomes in SC and doliolids in CC. Some zooplankton taxa showed compensatory increases over the same time period (ostracods, large decapods, and calycophoran siphonophores in both SC and CC; appendicularians and polychaetes in SC). Two tests for ecosystem shifts, a sequential algorithm and the cumulative sum of anomalies (CuSum) approach, failed to detect changes in 1976-1977 in total carbon biomass, displacement volume, or most individual major taxa, suggesting that aggregated biomass is an insensitive indicator of climate forcing. In contrast, both techniques revealed a cluster of step-like changes associated with the La Niña of 1999. The major El Niño’s in the past half century have consistently depressed total zooplankton biomass and biomass of many major taxa

  18. Bacterial bioluminescence as a lure for marine zooplankton and fish

    PubMed Central

    Zarubin, Margarita; Belkin, Shimshon; Ionescu, Michael; Genin, Amatzia

    2012-01-01

    The benefits of bioluminescence for nonsymbiotic marine bacteria have not been elucidated fully. One of the most commonly cited explanations, proposed more than 30 y ago, is that bioluminescence augments the propagation and dispersal of bacteria by attracting fish to consume the luminous material. This hypothesis, based mostly on the prevalence of luminous bacteria in fish guts, has not been tested experimentally. Here we show that zooplankton that contacts and feeds on the luminescent bacterium Photobacterium leiognathi starts to glow, and demonstrate by video recordings that glowing individuals are highly vulnerable to predation by nocturnal fish. Glowing bacteria thereby are transferred to the nutritious guts of fish and zooplankton, where they survive digestion and gain effective means for growth and dispersal. Using bioluminescence as bait appears to be highly beneficial for marine bacteria, especially in food-deprived environments of the deep sea. PMID:22203999

  19. 210Po/210Pb dynamics in relation to zooplankton biomass and trophic conditions during an annual cycle in northwestern Mediterranean coastal waters.

    PubMed

    Färber Lorda, Jaime; Fowler, Scott W; Miquel, Juan-Carlos; Rodriguez y Baena, Alessia; Jeffree, Ross A

    2013-01-01

    Monthly sampling in northwestern Mediterranean coastal waters was undertaken to better understand the relationship between zooplankton biomass and the cycling of the natural radionuclide (210)Po/(210)Pb pair during a one-year period (October 1995-November 1996). In conjunction with mesozooplankton collections and (210)Po/(210)Pb measurements in seawater, zooplankton and their fecal pellets, the biochemical composition of particulate organic matter (POM) was also examined at three depths (0, 20 and 50 m) as an indicator of trophic conditions. During May 1996, a strong zooplankton "bloom" was observed which was preceded by a prolonged increase in POM (protein + carbohydrates + lipids) starting at the end of March, and further demonstrated by a concomitant increase in the concentration of smaller particles, two features that are typical of mesotrophic waters. Simultaneous measurements of (210)Po in sea water and zooplankton showed an inverse trend between these two parameters during the sampling period, with the two lowest (210)Po concentrations in the dissolved phase of seawater coincident with the highest radionuclide concentrations in the zooplankton; however, this apparent relationship was not statistically significant over the entire year. Freshly excreted mesozooplankton and salp fecal pellets, which have been strongly implicated in the removal and downward transport of these radionuclides from the upper water column, contained (210)Po and (210)Pb levels ranging from 175 to 878 and 7.5-486 Bq kg(-1) dry weight, respectively. Salp pellets contained 5 and 10 times more (210)Po and (210)Pb than in fecal pellets produced by mixed zooplankton, a finding most likely related to their different feeding strategies. During the zooplankton biomass peak observed in May, the (210)Po concentration in zooplankton was at a minimum; however, in contrast to what has been reported to occur in some open sea oligotrophic waters, over the year no statistically significant inverse

  20. How Do Density Fronts Interact with Zooplankton Distributions to Create Baleen Whale Prey-Fields in Roseway Basin?

    NASA Astrophysics Data System (ADS)

    Ruckdeschel, G.; Ross, T.; Davies, K. T. A.

    2016-02-01

    On the Scotian Shelf in the northwest Atlantic, Roseway Basin is a feeding ground for several species of large baleen whales, including the highly endangered North Atlantic right whale. In this habitat, aggregations of zooplankton must be present at concentrations high enough for baleen whales to obtain an energetic benefit. Regions of highly concentrated zooplankton are formed within the habitat through various biophysical interactions, such as fontal accumulation and retention. In Roseway Basin, humpback and fin whales prey on accumulated euphausiids, while right and sei whales forage for deep layers of Calanoid copepods. Right whales are found most often along the southeastern basin margin in Roseway, and this is also where density fronts occur and are associated with zooplankton patches that can form and disaggregate at tidal scales. The temporal persistence and biophysical mechanisms behind the observed interactions of zooplankton and frontal features have not been assessed. To understand how density fronts impact zooplankton distributions at the scale of feeding whales, we deployed Slocum gliders equipped with conductivity-temperature-depth sensors and echosounders in a series of cross-isobath transects along the sloped southeastern margin of Roseway Basin during August to November 2015. By looking for the presence of density fronts that are also regions of elevated acoustic backscatter (primarily from copepods and euphausiids) and quantifying their persistence over time, we aim to determine how these biophysical interactions create whale prey-fields.

  1. Comparison of airborne lidar measurements with 420 kHz echo-sounder measurements of zooplankton.

    PubMed

    Churnside, James H; Thorne, Richard E

    2005-09-10

    Airborne lidar has the potential to survey large areas quickly and at a low cost per kilometer along a survey line. For this reason, we investigated the performance of an airborne lidar for surveys of zooplankton. In particular, we compared the lidar returns with echo-sounder measurements of zooplankton in Prince William Sound, Alaska. Data from eight regions of the Sound were compared, and the correlation between the two methods was 0.78. To obtain this level of agreement, a threshold was applied to the lidar return to remove the effects of scattering from phytoplankton.

  2. Trophic pathways of phytoplankton size classes through the zooplankton food web over the spring transition period in the north-west Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Hunt, Brian P. V.; Carlotti, François; Donoso, Katty; Pagano, Marc; D'Ortenzio, Fabrizio; Taillandier, Vincent; Conan, Pascal

    2017-08-01

    Knowledge of the relative contributions of phytoplankton size classes to zooplankton biomass is necessary to understand food-web functioning and response to climate change. During the Deep Water formation Experiment (DEWEX), conducted in the north-west Mediterranean Sea in winter (February) and spring (April) of 2013, we investigated phytoplankton-zooplankton trophic links in contrasting oligotrophic and eutrophic conditions. Size fractionated particulate matter (pico-POM, nano-POM, and micro-POM) and zooplankton (64 to >4000 μm) composition and carbon and nitrogen stable isotope ratios were measured inside and outside the nutrient-rich deep convection zone in the central Liguro-Provencal basin. In winter, phytoplankton biomass was low (0.28 mg m-3) and evenly spread among picophytoplankton, nanophytoplankton, and microphytoplankton. Using an isotope mixing model, we estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM of 28, 59, and 15%, respectively. In spring, the nutrient poor region outside the convection zone had low phytoplankton biomass (0.58 mg m-3) and was dominated by pico/nanophytoplankton. Estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM were 64, 28 and 10%, respectively, although the model did not differentiate well between pico-POM and nano-POM in this region. In the deep convection zone, spring phytoplankton biomass was high (1.34 mg m-3) and dominated by micro/nano phytoplankton. Estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM were 42, 42, and 20%, respectively, indicating that a large part of the microphytoplankton biomass may have remained ungrazed.Plain Language SummaryThe grazing of <span class="hlt">zooplankton</span> on algal phytoplankton is a critical step in the transfer of energy through all ocean food webs. Although microscopic, phytoplankton span an enormous size range. The smallest</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016DSRII.131..189J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016DSRII.131..189J"><span>The <span class="hlt">zooplankton</span> food web under East Antarctic pack ice - A stable isotope study</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jia, Zhongnan; Swadling, Kerrie M.; Meiners, Klaus M.; Kawaguchi, So; Virtue, Patti</p> <p>2016-09-01</p> <p>Understanding how sea ice serves <span class="hlt">zooplankton</span> species during the food-limited season is crucial information to evaluate the potential responses of pelagic food webs to changes in sea-ice conditions in the Southern Ocean. Stable isotope analyses (13C/12C and 15N/14N) were used to compare the dietary preferences and trophic relationships of major <span class="hlt">zooplankton</span> species under pack ice during two winter-spring transitions (2007 and 2012). During sampling, furcilia of Euphausia superba demonstrated dietary plasticity between years, herbivory when feeding on sea-ice biota, and with a more heterotrophic diet when feeding from both the sea ice and the water column. Carbon isotope signatures suggested that the pteropod Limacina helicina, small copepods Oithona spp., ostracods and amphipods relied heavily on sea-ice biota. Post larval E. superba and omnivorous krill Thysanoessa macrura consumed both water column and ice biota, but further investigations are needed to estimate the contribution from each source. Large copepods and chaetognaths overwintered on a water column-based diet. Our study suggests that warm and permeable sea ice is more likely to provide food for <span class="hlt">zooplankton</span> species under the ice than the colder ice.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PolSc..12...25M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PolSc..12...25M"><span>Meso-<span class="hlt">zooplankton</span> abundance and spatial distribution off Lützow-Holm Bay during austral summer 2007-2008</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Makabe, Ryosuke; Tanimura, Atsushi; Tamura, Takeshi; Hirano, Daisuke; Shimada, Keishi; Hashihama, Fuminori; Fukuchi, Mitsuo</p> <p>2017-06-01</p> <p>To elucidate spatial differences in mesozooplankton community structure in local scale, vertical hauls using a 60-μm mesh closing net were carried out off Lützow-Holm Bay in January 2008. All of the <span class="hlt">zooplankton</span> samples collected from three layers (0-100, 100-200, and 200-500 m) at seven stations were dominated by Oithona spp., Oncaea spp., Ctenocalanus citer, Microcalanus pygmaeus, and copepod nauplii. The cluster <span class="hlt">analysis</span> of mesozooplankton abundances showed three distinct groups according to sampling depth, which appeared to be due to the preferential vertical distribution of dominant copepods. The other cluster <span class="hlt">analysis</span> on integrated abundance upper 500 m revealed that mesozooplankton community structures at stations located on the western and eastern edges of the observation area (Cluster A) differed from those at the central stations (Cluster B). Abundance of copepod nauplii, Oithona spp., and C. citer differed between Clusters A and B, which was likely caused by differences in recruitment and early development in the dominant copepods, being associated with the timing and duration of ice edge blooms. This suggests that such heterogeneity in abundance and recruitment/development of dominant taxa was likely caused by local heterogeneity in sea ice dynamics. This may affect our understanding of <span class="hlt">zooplankton</span> distribution.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PrOce.158..224B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PrOce.158..224B"><span><span class="hlt">Diversity</span> and distribution of hyperiid amphipods along a latitudinal transect in the Atlantic Ocean</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Burridge, Alice K.; Tump, Marloes; Vonk, Ronald; Goetze, Erica; Peijnenburg, Katja T. C. A.</p> <p>2017-11-01</p> <p>As commensals and parasitoids of gelatinous plankton, hyperiid amphipods play unique and important ecological roles in pelagic food webs. Because the <span class="hlt">diversity</span> and biogeography of this group in oceanic waters is poorly known, we examined <span class="hlt">diversity</span> and distribution patterns of hyperiids along a basin-scale meridional transect in the Atlantic Ocean (Atlantic Meridional Transect cruise 22). Hyperiids were collected from epipelagic and upper mesopelagic depths at 27 stations between 39°N and 45°S. A total of 70 species in 36 genera and 17 families were identified, the majority of which belonged to the epipelagic Physocephalata infraorder. We observed maximum species and genus richness in the equatorial upwelling region (up to 35 species, 27 genera per station; 7°N-8°S), which appeared largely driven by increased <span class="hlt">diversity</span> in the superfamily Platysceloidea, as well as a significant and positive relationship between species richness and sea surface temperature. Cluster analyses of hyperiid species assemblages along the transect broadly supported a division into gyral, equatorial, transitional, and subantarctic assemblages, congruent with Longhurst's biogeochemical provinces. Steepest transitions in hyperiid species composition occurred at the southern subtropical convergence zone (34-38°S). The majority of <span class="hlt">zooplankton</span> groups show maximal <span class="hlt">diversity</span> in subtropical waters, and our observations of equatorial maxima in species and genus richness for hyperiids suggest that the mechanisms controlling <span class="hlt">diversity</span> in this group are distinct from other <span class="hlt">zooplanktonic</span> taxa. These patterns may be driven by the distribution and <span class="hlt">diversity</span> of gelatinous hosts for hyperiids, which remain poorly characterized at ocean basin scales. The data reported here provide new distributional records for epipelagic and upper mesopelagic hyperiids across six major oceanic provinces in the Atlantic Ocean.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035874','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035874"><span>An experimental <span class="hlt">analysis</span> of harmful algae-<span class="hlt">zooplankton</span> interactions and the ultimate defense</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Remmel, E.J.; Kohmescher, N.; Larson, J.H.; Hambright, K.D.</p> <p>2011-01-01</p> <p>We examined effects of the invasive, toxigenic haptophyte Prymnesium parvum on grazing rates, feeding behaviors, and life-history characteristics of clonal lineages of three daphniid <span class="hlt">zooplankton</span> species. Grazing experiments revealed similar clearance rates for P. parvum and a common green alga. Behavioral observations revealed no significant effects of P. parvum on daphniid feeding behaviors after 30 min, but major declines in appendage beat rates after 1 h. Chronic exposure (10 d) to P. parvum resulted in severe reductions in daphniid growth rates, age at first reproduction, fecundity, and survivorship at densities as low as 7750 cells mL-1. Thus, in addition to direct fish mortality during P. parvum blooms of 50,000-200,000 cells mL-1, the entire food web of an invaded system may be subjected to potentially severe negative consequences even at nonbloom densities of P. parvum. ?? 2011, by the American Society of Limnology and Oceanography, Inc.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015PrOce.134..330A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015PrOce.134..330A"><span>Migrant biomass and respiratory carbon flux by <span class="hlt">zooplankton</span> and micronekton in the subtropical northeast Atlantic Ocean (Canary Islands)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ariza, A.; Garijo, J. C.; Landeira, J. M.; Bordes, F.; Hernández-León, S.</p> <p>2015-05-01</p> <p>Diel Vertical Migration (DVM) in marine ecosystems is performed by <span class="hlt">zooplankton</span> and micronekton, promoting a poorly accounted export of carbon to the deep ocean. Major efforts have been made to estimate carbon export due to gravitational flux and to a lesser extent, to migrant <span class="hlt">zooplankton</span>. However, migratory flux by micronekton has been largely neglected in this context, due to its time-consuming and difficult sampling. In this paper, we evaluated gravitational and migratory flux due to the respiration of <span class="hlt">zooplankton</span> and micronekton in the northeast subtropical Atlantic Ocean (Canary Islands). Migratory flux was addressed by calculating the biomass of migrating components and measuring the electron transfer system (ETS) activity in <span class="hlt">zooplankton</span> and dominant species representing micronekton (Euphausia gibboides, Sergia splendens and Lobianchia dofleini). Our results showed similar biomass in both components. The main taxa contributing to DVM within <span class="hlt">zooplankton</span> were juvenile euphausiids, whereas micronekton were mainly dominated by fish, followed by adult euphausiids and decapods. The contribution to respiratory flux of <span class="hlt">zooplankton</span> (3.4 ± 1.9 mg C m-2 d-1) was similar to that of micronekton (2.9 ± 1.0 mg C m-2 d-1). In summary, respiratory flux accounted for 53% (range 23-71) of the gravitational flux measured at 150 m depth (11.9 ± 5.8 mg C m-2 d-1). However, based on larger migratory ranges and gut clearance rates, micronekton are expected to be the dominant component that contributes to carbon export in deeper waters. Micronekton estimates in this paper as well as those in existing literature, although variable due to regional differences and difficulties in calculating their biomass, suggest that carbon fluxes driven by this community are important for future models of the biological carbon pump.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012PrOce.103...80M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012PrOce.103...80M"><span>Implementation of the <span class="hlt">zooplankton</span> functional response in plankton models: State of the art, recent challenges and future directions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Morozov, Andrew; Poggiale, Jean-Christophe; Cordoleani, Flora</p> <p>2012-09-01</p> <p>The conventional way of describing grazing in plankton models is based on a <span class="hlt">zooplankton</span> functional response framework, according to which the consumption rate is computed as the product of a certain function of food (the functional response) and the density/biomass of herbivorous <span class="hlt">zooplankton</span>. A large amount of literature on experimental feeding reports the existence of a <span class="hlt">zooplankton</span> functional response in microcosms and small mesocosms, which goes a long way towards explaining the popularity of this framework both in mean-field (e.g. NPZD models) and spatially resolved models. On the other hand, the complex foraging behaviour of <span class="hlt">zooplankton</span> (feeding cycles) as well as spatial heterogeneity of food and grazer distributions (plankton patchiness) across time and space scales raise questions as to the existence of a functional response of herbivores in vivo. In the current review, we discuss limitations of the ‘classical’ <span class="hlt">zooplankton</span> functional response and consider possible ways to amend this framework to cope with the complexity of real planktonic ecosystems. Our general conclusion is that although the functional response of herbivores often does not exist in real ecosystems (especially in the form observed in the laboratory), this framework can be rather useful in modelling - but it does need some amendment which can be made based on various techniques of model reduction. We also show that the shape of the functional response depends on the spatial resolution (‘frame’) of the model. We argue that incorporating foraging behaviour and spatial heterogeneity in plankton models would not necessarily require the use of individual based modelling - an approach which is now becoming dominant in the literature. Finally, we list concrete future directions and challenges and emphasize the importance of a closer collaboration between plankton biologists and modellers in order to make further progress towards better descriptions of <span class="hlt">zooplankton</span> grazing.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA630079','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA630079"><span>Development and Applications of Technology for Sensing <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2003-09-30</p> <p><span class="hlt">zooplankton</span>-like particles. WORK COMPLETED In support of our first objective, in prior years we occupied sites in both East and West Sound at Orcas ...Island in northern Puget Sound , WA. We have also made deployments at four sites on open linear coasts, including one just north of Oceanside, CA (Red...layers. Multi-static, multi-frequency methods Most active bioacoustical methods in oceanography exclusively utilize the sound that is scattered</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSIS13A..04O','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSIS13A..04O"><span>Zooglider - an Autonomous Vehicle for Optical and Acoustic Sensing of Marine <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ohman, M. D.; Davis, R. E.; Sherman, J. T.; Grindley, K.; Whitmore, B. M.</p> <p>2016-02-01</p> <p>We will present results from early sea trials of the Zooglider, an autonomous <span class="hlt">zooplankton</span> glider designed and built by the Instrument Development Group at Scripps. The Zooglider is built upon a modified Spray glider and includes a low power camera with telecentric lens and a custom dual frequency sonar (200/1000 kHz). The imaging system quantifies <span class="hlt">zooplankton</span> as they flow through a sampling tunnel within a well-defined sampling volume. The maximum operating depth is 500 m. Other sensors include a pumped CTD and Chl-a fluorometer. The Zooglider permits in situ measurements of mesozooplankton distributions and three dimensional orientation in relation to other biotic and physical properties of the ocean water column. Zooglider development is supported by the Gordon and Betty Moore Foundation.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28822342','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28822342"><span>Responses of trophic structure and <span class="hlt">zooplankton</span> community to salinity and temperature in Tibetan lakes: Implication for the effect of climate warming.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lin, Qiuqi; Xu, Lei; Hou, Juzhi; Liu, Zhengwen; Jeppesen, Erik; Han, Bo-Ping</p> <p>2017-11-01</p> <p>Warming has pronounced effects on lake ecosystems, either directly by increased temperatures or indirectly by a change in salinity. We investigated the current status of <span class="hlt">zooplankton</span> communities and trophic structure in 45 Tibetan lakes along a 2300 m altitude and a 76 g/l salinity gradient. Freshwater to hyposaline lakes mainly had three trophic levels: phytoplankton, small <span class="hlt">zooplankton</span> and fish/Gammarus, while mesosaline to hypersaline lakes only had two: phytoplankton and large <span class="hlt">zooplankton</span>. <span class="hlt">Zooplankton</span> species richness declined significantly with salinity, but did not relate with temperature. Furthermore, the decline in species richness with salinity in lakes with two trophic levels was much less abrupt than in lakes with three trophic levels. The structural variation of the <span class="hlt">zooplankton</span> community depended on the length of the food chain, and was significantly explained by salinity as the critical environmental variable. The <span class="hlt">zooplankton</span> community shifted from dominance of copepods and small cladoceran species in the lakes with low salinity and three trophic levels to large saline filter-feeding phyllopod species in those lakes with high salinity and two trophic levels. The <span class="hlt">zooplankton</span> to phytoplankton biomass ratio was positively related with temperature in two-trophic-level systems and vice versa in three-trophic-level systems. As the Tibetan Plateau is warming about three times faster than the global average, our results imply that warming could have a considerable impact on the structure and function of Tibetan lake ecosystems, either via indirect effects of salinization/desalinization on species richness, composition and trophic structure or through direct effects of water temperature on trophic interactions. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA573551','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA573551"><span>Field Demonstration of a Broadband Acoustical Backscattering System Mounted on a REMUS-100 for Inferences of <span class="hlt">Zooplankton</span> Size and Abundance</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2012-09-30</p> <p>particularly high, and that numerical abundance of <span class="hlt">zooplankton</span> was dominated by small copepods that were relatively evenly distributed throughout the water...column. Elastic-shelled pterapods and <span class="hlt">zooplankton</span> with gas-inclusions were not observed at significant abundances. Small copepods were distributed</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23906853','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23906853"><span>Trophic transfer of microcystins through the lake pelagic food web: evidence for the role of <span class="hlt">zooplankton</span> as a vector in fish contamination.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sotton, Benoît; Guillard, Jean; Anneville, Orlane; Maréchal, Marjorie; Savichtcheva, Olga; Domaizon, Isabelle</p> <p>2014-01-01</p> <p>An in situ study was performed to investigate the role of <span class="hlt">zooplankton</span> as a vector of microcystins (MCs) from Planktothrix rubescens filaments to fish during a metalimnic bloom of P. rubescens in Lake Hallwil (Switzerland). The concentrations of MCs in P. rubescens and various <span class="hlt">zooplanktonic</span> taxa (filter-feeders and predators) were assessed in different water strata (epi-, meta- and hypolimnion) using replicated sampling over a 24-hour survey. The presence of P. rubescens in the gut content of various <span class="hlt">zooplanktonic</span> taxa (Daphnia, Bosmina and Chaoborus) was verified by targeting the cyanobacterial nucleic acids (DNA). These results highlighted that cyanobacterial cells constitute a part of food resource for herbivorous <span class="hlt">zooplanktonic</span> taxa during metalimnic bloom periods. Furthermore, presence of MCs in Chaoborus larvae highlighted the trophic transfer of MCs between herbivorous <span class="hlt">zooplankton</span> and their invertebrate predators. Our results suggest that <span class="hlt">zooplanktonic</span> herbivores by diel vertical migration (DVM) act as vectors of MCs by encapsulating grazed cyanobacteria. As a consequence, they largely contribute to the contamination of <span class="hlt">zooplanktonic</span> predators, and in fine of zooplanktivorous whitefish. Indeed, we estimated the relative contribution of three preys of the whitefish (i.e. Daphnia, Bosmina and Chaoborus) to diet contamination. We showed that Chaoborus and Daphnia were the highest contributor as MC vectors in the whitefish diet (74.6 and 20.5% of MC-LR equivalent concentrations, respectively). The transfer of MCs across the different trophic compartments follows complex trophic pathways involving various trophic levels whose relative importance in fish contamination might vary at daily and seasonal scale. © 2013.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017IJBC...2750088H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017IJBC...2750088H"><span>Cross-Diffusion Induced Turing Instability and Amplitude Equation for a Toxic-Phytoplankton-<span class="hlt">Zooplankton</span> Model with Nonmonotonic Functional Response</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Han, Renji; Dai, Binxiang</p> <p>2017-06-01</p> <p>The spatiotemporal pattern induced by cross-diffusion of a toxic-phytoplankton-<span class="hlt">zooplankton</span> model with nonmonotonic functional response is investigated in this paper. The linear stability <span class="hlt">analysis</span> shows that cross-diffusion is the key mechanism for the formation of spatial patterns. By taking cross-diffusion rate as bifurcation parameter, we derive amplitude equations near the Turing bifurcation point for the excited modes in the framework of a weakly nonlinear theory, and the stability <span class="hlt">analysis</span> of the amplitude equations interprets the structural transitions and stability of various forms of Turing patterns. Furthermore, we illustrate the theoretical results via numerical simulations. It is shown that the spatiotemporal distribution of the plankton is homogeneous in the absence of cross-diffusion. However, when the cross-diffusivity is greater than the critical value, the spatiotemporal distribution of all the plankton species becomes inhomogeneous in spaces and results in different kinds of patterns: spot, stripe, and the mixture of spot and stripe patterns depending on the cross-diffusivity. Simultaneously, the impact of toxin-producing rate of toxic-phytoplankton (TPP) species and natural death rate of <span class="hlt">zooplankton</span> species on pattern selection is also explored.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70020610','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70020610"><span>Tidally oriented vertical migration and position maintenance of <span class="hlt">zooplankton</span> in a temperate estuary</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Kimmerer, W.J.; Burau, J.R.; Bennett, W.A.</p> <p>1998-01-01</p> <p>In many estuaries, maxima in turbidity and abundance of several common species of <span class="hlt">zooplankton</span> occur in the low salinity zone (LSZ) in the range of 0.5-6 practical salinity units (psu). <span class="hlt">Analysis</span> of <span class="hlt">zooplankton</span> abundance from monitoring in 1972-1987 revealed that historical maxima in abundance of the copepod Eurytemora affinis and the mysid Neomysis mercedis, and in turbidity as determined from Secchi disk data, were close to the estimated position of 2 psu bottom salinity. The copepod Sinocalanus doerrii had a maximum slightly landward of that of E. affinis. After 1987 these maxima decreased and shifted to a lower salinity, presumably because of the effects of grazing by the introduced clam Potamocorbula amurensis. At the same time, the copepod Pseudodiaptomus forbesi, the mysid Acanthomysis sp., and amphipods became abundant with peaks at salinity around 0.2-0.5 psu. Plausible mechanisms for maintenance of these persistent abundance peaks include interactions between variation in flow and abundance, either in the vertical or horizontal plane, or higher net population growth rate in the peaks than seaward of the peaks. In spring of 1994, a dry year, we sampled in and near the LSZ using a Lagrangian sampling scheme to follow selected isohalines while sampling over several complete tidal cycles. Acoustic Doppler current profilers were used to provide detailed velocity distributions to enable us to estimate longitudinal fluxes of organisms. Stratification was weak and gravitational circulation nearly absent in the LSZ. All of the common species of <span class="hlt">zooplankton</span> migrated vertically in response to the tides, with abundance higher in the water column on the flood than on the ebb. Migration of mysids and amphipods was sufficient to override net seaward flow to produce a net landward flux of organisms. Migration of copepods, however, was insufficient to reverse or even greatly diminish the net seaward flux of organisms, implying alternative mechanisms of position maintenance.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23936054','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23936054"><span>Lack of congruence in species <span class="hlt">diversity</span> indices and community structures of planktonic groups based on local environmental factors.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Doi, Hideyuki; Chang, Kwang-Hyeon; Nishibe, Yuichiro; Imai, Hiroyuki; Nakano, Shin-ichi</p> <p>2013-01-01</p> <p>The importance of analyzing the determinants of biodiversity and community composition by using multiple trophic levels is well recognized; however, relevant data are lacking. In the present study, we investigated variations in species <span class="hlt">diversity</span> indices and community structures of the plankton taxonomic groups-<span class="hlt">zooplankton</span>, rotifers, ciliates, and phytoplankton-under a range of local environmental factors in pond ecosystems. For each planktonic group, we estimated the species <span class="hlt">diversity</span> index by using linear models and analyzed the community structure by using canonical correspondence <span class="hlt">analysis</span>. We showed that the species <span class="hlt">diversity</span> indices and community structures varied among the planktonic groups and according to local environmental factors. The observed lack of congruence among the planktonic groups may have been caused by niche competition between groups with similar trophic guilds or by weak trophic interactions. Our findings highlight the difficulty of predicting total biodiversity within a system, based upon a single taxonomic group. Thus, to conserve the biodiversity of an ecosystem, it is crucial to consider variations in species <span class="hlt">diversity</span> indices and community structures of different taxonomic groups, under a range of local conditions.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5667825','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5667825"><span>Abundance, distribution and <span class="hlt">diversity</span> of gelatinous predators along the northern Mid-Atlantic Ridge: A comparison of different sampling methodologies</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Falkenhaug, Tone; Baxter, Emily J.</p> <p>2017-01-01</p> <p>The <span class="hlt">diversity</span> and distribution of gelatinous <span class="hlt">zooplankton</span> were investigated along the northern Mid-Atlantic Ridge (MAR) from June to August 2004.Here, we present results from macrozooplankton trawl sampling, as well as comparisons made between five different methodologies that were employed during the MAR-ECO survey. In total, 16 species of hydromedusae, 31 species of siphonophores and four species of scyphozoans were identified to species level from macrozooplankton trawl samples. Additional taxa were identified to higher taxonomic levels and a single ctenophore genus was observed. Samples were collected at 17 stations along the MAR between the Azores and Iceland. A divergence in the species assemblages was observed at the southern limit of the Subpolar Frontal Zone. The catch composition of gelatinous <span class="hlt">zooplankton</span> is compared between different sampling methodologies including: a macrozooplankton trawl; a Multinet; a ringnet attached to bottom trawl; and optical platforms (Underwater Video Profiler (UVP) & Remotely Operated Vehicle (ROV)). Different sampling methodologies are shown to exhibit selectivity towards different groups of gelatinous <span class="hlt">zooplankton</span>. Only ~21% of taxa caught during the survey were caught by both the macrozooplankton trawl and the Multinet when deployed at the same station. The estimates of gelatinous <span class="hlt">zooplankton</span> abundance calculated using these two gear types also varied widely (1.4 ± 0.9 individuals 1000 m-3 estimated by the macrozooplankton trawl vs. 468.3 ± 315.4 individuals 1000 m-3 estimated by the Multinet (mean ± s.d.) when used at the same stations (n = 6). While it appears that traditional net sampling can generate useful data on pelagic cnidarians, comparisons with results from the optical platforms suggest that ctenophore <span class="hlt">diversity</span> and abundance are consistently underestimated, particularly when net sampling is conducted in combination with formalin fixation. The results emphasise the importance of considering sampling methodology</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29095891','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29095891"><span>Abundance, distribution and <span class="hlt">diversity</span> of gelatinous predators along the northern Mid-Atlantic Ridge: A comparison of different sampling methodologies.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hosia, Aino; Falkenhaug, Tone; Baxter, Emily J; Pagès, Francesc</p> <p>2017-01-01</p> <p>The <span class="hlt">diversity</span> and distribution of gelatinous <span class="hlt">zooplankton</span> were investigated along the northern Mid-Atlantic Ridge (MAR) from June to August 2004.Here, we present results from macrozooplankton trawl sampling, as well as comparisons made between five different methodologies that were employed during the MAR-ECO survey. In total, 16 species of hydromedusae, 31 species of siphonophores and four species of scyphozoans were identified to species level from macrozooplankton trawl samples. Additional taxa were identified to higher taxonomic levels and a single ctenophore genus was observed. Samples were collected at 17 stations along the MAR between the Azores and Iceland. A divergence in the species assemblages was observed at the southern limit of the Subpolar Frontal Zone. The catch composition of gelatinous <span class="hlt">zooplankton</span> is compared between different sampling methodologies including: a macrozooplankton trawl; a Multinet; a ringnet attached to bottom trawl; and optical platforms (Underwater Video Profiler (UVP) & Remotely Operated Vehicle (ROV)). Different sampling methodologies are shown to exhibit selectivity towards different groups of gelatinous <span class="hlt">zooplankton</span>. Only ~21% of taxa caught during the survey were caught by both the macrozooplankton trawl and the Multinet when deployed at the same station. The estimates of gelatinous <span class="hlt">zooplankton</span> abundance calculated using these two gear types also varied widely (1.4 ± 0.9 individuals 1000 m-3 estimated by the macrozooplankton trawl vs. 468.3 ± 315.4 individuals 1000 m-3 estimated by the Multinet (mean ± s.d.) when used at the same stations (n = 6). While it appears that traditional net sampling can generate useful data on pelagic cnidarians, comparisons with results from the optical platforms suggest that ctenophore <span class="hlt">diversity</span> and abundance are consistently underestimated, particularly when net sampling is conducted in combination with formalin fixation. The results emphasise the importance of considering sampling methodology</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62597&keyword=opc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62597&keyword=opc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span><span class="hlt">ZOOPLANKTON</span> SIZE-SPECTRA AS AN INDICATOR IN GREAT LAKES COASTAL WATERS</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p><span class="hlt">Zooplankton</span> size-spectra has the potential to be used as an indicator of ecological condition. Mean size and size-distribution are effected by planktivore pressure and therefore reflect trophic cascade interactions as well as size selective predation. We used an optical plankton ...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018WRR....54..939B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018WRR....54..939B"><span>The Interactive Effect of Multiple Stressors on Crustacean <span class="hlt">Zooplankton</span> Communities in Montane Lakes</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Brittain, Jeffrey T.; Strecker, Angela L.</p> <p>2018-02-01</p> <p>Nonnative fish introductions have altered thousands of naturally fishless montane lakes, resulting in cascading food web repercussions. Nitrogen deposition has been recognized as an anthropogenic contributor to acidification and eutrophication of freshwater ecosystems, which may affect the abundance and composition of planktonic communities. This study identified responses of <span class="hlt">zooplankton</span> communities from two lakes (fish present versus absent) in Mount Rainier National Park to manipulations simulating an episodic disturbance of acidification and eutrophication via nitrogen addition in mesocosms. <span class="hlt">Zooplankton</span> communities from lakes with different food web structure (i.e., fish present or absent) responded differently to the singular effects of acid and nitrogen addition. For instance, <span class="hlt">zooplankton</span> biomass decreased in the acid treatment of the fishless lake experiment, but increased in response to acid in the fish-present experiment. In contrast, the combination of acid and nitrogen often resulted in weak responses for both lake types, resulting in nonadditive effects, i.e., the net effect of the stressors was in the opposite direction than predicted, which is known as a reversal or "ecological surprise." This experiment demonstrates the difficulty in predicting the interactive effects of multiple stressors on aquatic communities, which may pose significant challenges for habitat restoration through fish removal.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li class="active"><span>13</span></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_13 --> <div id="page_14" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="261"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29804250','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29804250"><span><span class="hlt">Zooplankton</span> sensitivity and phytoplankton regrowth for ballast water treatment with advanced oxidation processes.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>García-Garay, Juan; Franco-Herrera, Andrés; Machuca-Martinez, Fiderman</p> <p>2018-05-26</p> <p>The ballasting and de-ballasting of ships are two necessary operations with ballast water that provide stability for safe navigation. Empty ships must ballast tanks with water, which contains living organisms and subsequently carries them away from their original distribution. De-ballasting represents an input of still viable <span class="hlt">zooplankton</span>, phytoplankton, and microorganisms in the destination port, leading to the introduction of alien species, and consequently, the introduction of organisms will alter the local biodiversity. Ballast water treatment is necessary to comply with the International Maritime Organization (IMO) for the maximum viable organisms permitted. It is known that UVC eliminates microorganisms, but there are few studies on the other taxonomical groups, such as phytoplankton and <span class="hlt">zooplankton</span>. The advance oxidation processes (AOPs) with UV-C can be a good alternative to manage the problem of ballast water, primarily for microorganisms. However, for larger organisms, there is more resistance, and, a stage with filtration (by physical filtration or hydrocyclone) is usually required. The filter can fail, or certain <span class="hlt">zooplankton</span> organisms can escape across the filter and go to the AOPs or UVC reactor. According to the taxonomic group, there can be a different sensitivity to the treatment, and one could survive and generate a risk. The AOPs tested were natural solar radiation (RAD), UV/H 2 O 2 , UV/TiO 2 , UV/TiO 2 /H 2 O 2 , and UV/TiO 2 /H 2 O 2 /RAD. Natural sea water was pumped and treated with the AOPs. The vital <span class="hlt">zooplankton</span> organisms counted were polychaetes, cladocerans, ostracods, nauplii and calanoid, cyclopoid, and harpacticoid copepods. For the phytoplankton, the abundance was estimated, and the photosystem II efficiency was determined. To evaluate the phytoplankton regrowth after the treatments, the treated water was stored and populations counted for 20 days. The most effective treatment for the <span class="hlt">zooplankton</span> groups was UVC/H 2 O 2 . Regarding the</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016PrOce.140...69K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016PrOce.140...69K"><span>Carbon and nitrogen stable isotope ratios of pelagic <span class="hlt">zooplankton</span> elucidate ecohydrographic features in the oligotrophic Red Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kürten, Benjamin; Al-Aidaroos, Ali M.; Kürten, Saskia; El-Sherbiny, Mohsen M.; Devassy, Reny P.; Struck, Ulrich; Zarokanellos, Nikolaos; Jones, Burton H.; Hansen, Thomas; Bruss, Gerd; Sommer, Ulrich</p> <p>2016-01-01</p> <p>Although <span class="hlt">zooplankton</span> occupy key roles in aquatic biogeochemical cycles, little is known about the pelagic food web and trophodynamics of <span class="hlt">zooplankton</span> in the Red Sea. Natural abundance stable isotope <span class="hlt">analysis</span> (SIA) of carbon (δ13C) and N (δ15N) is one approach to elucidating pelagic food web structures and diet assimilation. Integrating the combined effects of ecological processes and hydrography, ecohydrographic features often translate into geographic patterns in δ13C and δ15N values at the base of food webs. This is due, for example, to divergent 15N abundances in source end-members (deep water sources: high δ15N, diazotrophs: low δ15N). Such patterns in the spatial distributions of stable isotope values were coined isoscapes. Empirical data of atmospheric, oceanographic, and biological processes, which drive the ecohydrographic gradients of the oligotrophic Red Sea, are under-explored and some rather anticipated than proven. Specifically, five processes underpin Red Sea gradients: (a) monsoon-related intrusions of nutrient-rich Indian Ocean water; (b) basin scale thermohaline circulation; (c) mesoscale eddy activity that causes up-welling of deep water nutrients into the upper layer; (d) the biological fixation of atmospheric nitrogen (N2) by diazotrophs; and (e) the deposition of dust and aerosol-derived N. This study assessed relationships between environmental samples (nutrients, chlorophyll a), oceanographic data (temperature, salinity, current velocity [ADCP]), particulate organic matter (POM), and net-phytoplankton, with the δ13C and δ15N values of <span class="hlt">zooplankton</span> collected in spring 2012 from 16°28‧ to 26°57‧N along the central axis of the Red Sea. The δ15N of bulk POM and most <span class="hlt">zooplankton</span> taxa increased from North (Duba) to South (Farasan). The potential contribution of deep water nutrient-fueled phytoplankton, POM, and diazotrophs varied among sites. Estimates suggested higher diazotroph contributions in the North, a greater contribution of</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001DSRII..48.1063H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001DSRII..48.1063H"><span>Diel changes in the near-surface biomass of <span class="hlt">zooplankton</span> and the carbon content of vertical migrants</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hays, Graeme C.; Harris, Roger P.; Head, Robert N.</p> <p></p> <p><span class="hlt">Zooplankton</span> biomass and the carbon content of vertical migrants were measured in the NE Atlantic (36.5°N, 19.2°W) between 11 and 18 July 1996 as part of the Plankton Reactivity in the Marine Environment (PRIME) programme. The increase in <span class="hlt">zooplankton</span> biomass near the surface (0-100 m) at night compared to during the day suggested that diel vertical migration was an important feature at this site. For three species of vertically migrant copepods, Pleuromamma pisekii, P. gracilis and P. abdominalis, the carbon content of individuals collected at dusk was significantly less than for individuals collected at dawn, with this reduction being 6.2, 7.3 and 14.8%, respectively. This dawn-dusk reduction in carbon content is consistent with the diel pattern of feeding and fasting exhibited by vertical migrants and supports the suggestion that migrating <span class="hlt">zooplankton</span> will cause an active export of carbon from the surface layers.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1987PrOce..19..353P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1987PrOce..19..353P"><span>Interactions of phytoplankton, <span class="hlt">zooplankton</span> and microorganisms</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Pomeroy, L. R.; Paffenhöfer, G.-A.; Yoder, J. A.</p> <p></p> <p>We present evidence that there are significant interactions between heterotrophic microorganisms, doliolids and Fritillaria within intrusions of nutrient-rich Gulf Stream water stranding on the continental shelf. During the summer of 1981 cold, nutrient-rich water from below the surface of the Gulf Stream was repeatedly intruded and stranded on the continental shelf off northeastern Florida. On August 6 old, stranded Gulf Stream water depleted of nitrate occupied the lower layer on the outer shelf. The upper water was continental shelf water, older but of undefined age. On August 6 free-living bacteria were >10 6ml -1 everywhere at all depths, an order of magnitude greater than normal bacterial numbers on the northeastern Florida continental shelf. Over 10 days the numbers of free bacteria doubled while bacteria attached to particles increased by a factor of four. The adenylate/chlorophyll ratio showed that phytoplankton dominated the lower layers of intruded water, while the surface water became increasingly dominated by heterotrophic microorganisms (bacteria and protozoa) over 10 days. There were significant, negative correlations between bacteria and doliolids and between bacteria and Fritillaria. Regions of maximum bacterial numbers did not coincide with locations of salp swarms. The increased numbers of bacteria at all depths in a highly stratified system in which most phytoplankton are in the lower layer suggests a <span class="hlt">diverse</span> source of bacterial growth substrates, some of which involve <span class="hlt">zooplankton</span> as intermediaries. Production of autotrophs is more than twice that of microheterotrophs on average, but because of their differential distribution, microheterotrophs are the dominant biomass in much of the surface water and may be significant in energy flux to metazoan consumers as well as competitors for mutually useable sources of nutrition.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22437379','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22437379"><span><span class="hlt">Zooplankton</span> community resilience and aquatic environmental stability on aquaculture practices: a study using net cages.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dias, J D; Simões, N R; Bonecker, C C</p> <p>2012-02-01</p> <p>Fish farming in net cages causes changes in environmental conditions. We evaluated the resilience of <span class="hlt">zooplankton</span> concerning this activity in Rosana Reservoir (Paranapanema River, PR-SP). Samples were taken near the net cages installed at distances upstream and downstream, before and after net cage installation. The resilience was estimated by the decrease in the groups' abundance after installing the net cages. The <span class="hlt">zooplankton</span> community was represented by 106 species. The most abundant species were Synchaeta pectinata, S. oblonga, Conochilus coenobasis, Polyarthra dolichoptera and C. unicornis (Rotifera), Ceriodaphnia cornuta, Moina minuta, Bosmina hagmanni and C. silvestrii (Cladocera) and Notodiaptomus amazonicus (Copepoda). The resilience of microcrustaceans was affected in the growing points as this activity left the production environment for longer, delaying the natural ability of community responses. Microcrustaceans groups, mainly calanoid and cyclopoid copepods, had a different return rate. The net cage installation acted as a stress factor on the <span class="hlt">zooplankton</span> community. Management strategies that cause fewer risks to the organisms and maximize energy flow may help in maintaining system stability.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28623024','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28623024"><span>Functional <span class="hlt">diversity</span> of aquatic ciliates.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Weisse, Thomas</p> <p>2017-10-01</p> <p>This paper first reviews the concept of functional <span class="hlt">diversity</span> in general terms and then applies it to free-living aquatic ciliates. Ciliates are extremely versatile organisms and display an enormous functional <span class="hlt">diversity</span> as key elements of pelagic food webs, acting as predators of bacteria, algae, other protists and even some metazoans. Planktonic ciliates are important food for <span class="hlt">zooplankton</span>, and mixotrophic and functionally autotrophic species may significantly contribute to primary production in the ocean and in lakes. The co-occurrence of many ciliate species in seemingly homogenous environments indicates a wide range of their ecological niches. Variation in space and time may foster co-occurrence and prevent violating the competitive exclusion principle among ciliates using the same resources. Considering that many ciliates may be dormant and/or rare in many habitats, ciliate species <span class="hlt">diversity</span> must be higher than can be deduced from simple sampling techniques; molecular methods of identification clearly point to this hidden <span class="hlt">diversity</span>. From a functional point of view, the question is how much of this <span class="hlt">diversity</span> represents redundancy. A key challenge for future research is to link the ecophysiological performance of naturally co-occurring ciliates to their functional genes. To this end, more experimental research is needed with with functionally different species. Copyright © 2017 The Author. Published by Elsevier GmbH.. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70011713','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70011713"><span><span class="hlt">Zooplankton</span> fecal pellets link fossil fuel and phosphate deposits</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Porter, K.G.; Robbins, E.I.</p> <p>1981-01-01</p> <p>Fossil <span class="hlt">zooplankton</span> fecal pellets found in thinly bedded marine and lacustrine black shales associated with phosphate, oil, and coal deposits, link the deposition of organic matter and biologically associated minerals with planktonic ecosystems. The black shales were probably formed in the anoxic basins of coastal marine waters, inland seas, and rift valley lakes where high productivity was supported by runoff, upwelling, and outwelling. Copyright ?? 1981 AAAS.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4492990','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4492990"><span>Estimating In Situ <span class="hlt">Zooplankton</span> Non-Predation Mortality in an Oligo-Mesotrophic Lake from Sediment Trap Data: Caveats and Reality Check</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Dubovskaya, Olga P.; Tang, Kam W.; Gladyshev, Michail I.; Kirillin, Georgiy; Buseva, Zhanna; Kasprzak, Peter; Tolomeev, Aleksandr P.; Grossart, Hans-Peter</p> <p>2015-01-01</p> <p>Background Mortality is a main driver in <span class="hlt">zooplankton</span> population biology but it is poorly constrained in models that describe <span class="hlt">zooplankton</span> population dynamics, food web interactions and nutrient dynamics. Mortality due to non-predation factors is often ignored even though anecdotal evidence of non-predation mass mortality of <span class="hlt">zooplankton</span> has been reported repeatedly. One way to estimate non-predation mortality rate is to measure the removal rate of carcasses, for which sinking is the primary removal mechanism especially in quiescent shallow water bodies. Objectives and Results We used sediment traps to quantify in situ carcass sinking velocity and non-predation mortality rate on eight consecutive days in 2013 for the cladoceran Bosmina longirostris in the oligo-mesotrophic Lake Stechlin; the outcomes were compared against estimates derived from in vitro carcass sinking velocity measurements and an empirical model correcting in vitro sinking velocity for turbulence resuspension and microbial decomposition of carcasses. Our results show that the latter two approaches produced unrealistically high mortality rates of 0.58-1.04 d-1, whereas the sediment trap approach, when used properly, yielded a mortality rate estimate of 0.015 d-1, which is more consistent with concurrent population abundance data and comparable to physiological death rate from the literature. Ecological implications <span class="hlt">Zooplankton</span> carcasses may be exposed to water column microbes for days before entering the benthos; therefore, non-predation mortality affects not only <span class="hlt">zooplankton</span> population dynamics but also microbial and benthic food webs. This would be particularly important for carbon and nitrogen cycles in systems where recurring mid-summer decline of <span class="hlt">zooplankton</span> population due to non-predation mortality is observed. PMID:26146995</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28898955','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28898955"><span>Aging of microplastics promotes their ingestion by marine <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Vroom, Renske J E; Koelmans, Albert A; Besseling, Ellen; Halsband, Claudia</p> <p>2017-12-01</p> <p>Microplastics (<5 mm) are ubiquitous in the marine environment and are ingested by <span class="hlt">zooplankton</span> with possible negative effects on survival, feeding, and fecundity. The majority of laboratory studies has used new and pristine microplastics to test their impacts, while aging processes such as weathering and biofouling alter the characteristics of plastic particles in the marine environment. We investigated <span class="hlt">zooplankton</span> ingestion of polystyrene beads (15 and 30 μm) and fragments (≤30 μm), and tested the hypothesis that microplastics previously exposed to marine conditions (aged) are ingested at higher rates than pristine microplastics. Polystyrene beads were aged by soaking in natural local seawater for three weeks. Three <span class="hlt">zooplankton</span> taxa ingested microplastics, excluding the copepod Pseudocalanus spp., but the proportions of individuals ingesting plastic and the number of particles ingested were taxon and life stage specific and dependent on plastic size. All stages of Calanus finmarchicus ingested polystyrene fragments. Aged microbeads were preferred over pristine ones by females of Acartia longiremis as well as juvenile copepodites CV and adults of Calanus finmarchicus. The preference for aged microplastics may be attributed to the formation of a biofilm. Such a coating, made up of natural microbes, may contain similar prey as the copepods feed on in the water column and secrete chemical exudates that aid chemodetection and thus increase the attractiveness of the particles as food items. Much of the ingested plastic was, however, egested within a short time period (2-4 h) and the survival of adult Calanus females was not affected in an 11-day exposure. Negative effects of microplastics ingestion were thus limited. Our findings emphasize, however, that aging plays an important role in the transformation of microplastics at sea and ingestion by grazers, and should thus be considered in future microplastics ingestion studies and estimates of microplastics</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22325448','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22325448"><span>Neustonic microplastic and <span class="hlt">zooplankton</span> in the North Western Mediterranean Sea.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Collignon, Amandine; Hecq, Jean-Henri; Glagani, François; Voisin, Pierre; Collard, France; Goffart, Anne</p> <p>2012-04-01</p> <p>Neustonic microplastic and <span class="hlt">zooplankton</span> abundance was determined in the North Western Mediterranean Sea during a summer cruise between July 9th and August 6th 2010, with a break between July 22 th and 25th due to a strong wind event. Ninety percent of the 40 stations contained microplastic particles (size 0.3-5mm) of various compositions: e.g., filaments, polystyrene, thin plastic films. An average concentration of 0.116 particles/m(2) was observed. The highest abundances (>0.36 particles/m(2)) were observed in shelf stations. The neustonic plastic particles concentrations were 5 times higher before than after the strong wind event which increased the mixing and the vertical repartition of plastic particles in the upper layers of the water column. The values rise in the same order of magnitude than in the North Pacific Gyre. The average ratio between microplastics and mesozooplankton weights was 0.5 for the whole survey and might induce a potential confusion for <span class="hlt">zooplankton</span> feeders. Copyright © 2012 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29869213','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29869213"><span>The response of <span class="hlt">zooplankton</span> communities to the 2016 extreme hydrological cycle in floodplain lakes connected to the Yangtze River in China.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhang, Kun; Xu, Mei; Wu, Qili; Lin, Zhi; Jiang, Fangyuan; Chen, Huan; Zhou, Zhongze</p> <p>2018-06-04</p> <p>The Huayanghe Lakes play an important role in the Yangtze floodplain in China and had extremely high water levels during the summer of 2016. Monitoring data was collected in an effort to understand the impact of this change on the crustacean <span class="hlt">zooplankton</span> composition and abundance and the biomass variation in the Huayanghe Lakes between a regular hydrological cycle (RHC) and an extreme hydrological cycle (EHC). The crustacean <span class="hlt">zooplankton</span> community composition, abundance, and biomass in the floodplain lakes were markedly affected by the water-level disturbance. The number of species was lower in the RHC, but the mean density and biomass decreased from 93.84 ± 13.29 ind./L and 6.11 ± 0.89 mg/L, respectively, in the RHC to 66.62 ± 10.88 ind./L and 1.22 ± 0.26 mg/L, respectively, in the EHC. Pearson correlations and redundancy analyses revealed the environmental factors with the most significant impact on the crustacean <span class="hlt">zooplankton</span> community differed between the RHC and EHC cycles. Little previous information exists on the <span class="hlt">zooplankton</span> in these lakes, and the present study provides data on the <span class="hlt">zooplankton</span> composition, abundance, and biomass, both at baseline and in response to hydrological changes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29081040','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29081040"><span>The synergetic effects of turbulence and turbidity on the <span class="hlt">zooplankton</span> community structure in large, shallow Lake Taihu.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhou, Jian; Qin, Boqiang; Han, Xiaoxia</p> <p>2018-01-01</p> <p>Climate change is predicted to influence the heat budget of aquatic ecosystems and, in turn, affect the stability of the water column leading to increased turbulence coupled with enhanced turbidity. However, the synergetic effects of turbulence and turbidity on <span class="hlt">zooplankton</span> community structure remain to be understood in large, shallow lakes. To determine the possible synergetic effects of these factors on <span class="hlt">zooplankton</span> communities, a 15-day mesocosm experiment was carried out and tested under four turbulence and turbidity regimes namely control (ɛ = 0, 7.6 ± 4.2 NTU), low (ɛ = 6.01 × 10 -8  m 2  s -3 , 19.4 ± 8.6 NTU), medium (ɛ = 2.95 × 10 -5  m 2  s -3 , 55.2 ± 14.4 NTU), and high (ɛ = 2.39 × 10 -4  m 2  s -3 , 741.6 ± 105.2 NTU) conditions, which were comparable to the natural conditions in Lake Taihu. Results clearly showed the negative effects of turbulence and turbidity on <span class="hlt">zooplankton</span> survival, which also differed among taxa. Specifically, increased turbulence and turbidity levels influenced the competition among <span class="hlt">zooplankton</span> species, which resulted to the shift from being large body crustacean-dominated (copepods and cladocerans) to rotifer-dominated community after 3 days. The shift could be associated with the decrease in vulnerability of crustaceans in such environments. Our findings suggested that changes in the level of both turbidity and turbulence in natural aquatic systems would have significant repercussions on the <span class="hlt">zooplankton</span> communities, which could contribute to the better understanding of community and food web dynamics in lake ecosystems exposed to natural mixing/disturbances.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70173606','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70173606"><span>Hydroxide stabilization as a new tool for ballast disinfection: Efficacy of treatment on <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Moffitt, Christine M.; Watten, Barnaby J.; Barenburg, Amber; Henquinet, Jeffrey</p> <p>2015-01-01</p> <p>Effective and economical tools are needed for treating ship ballast to meet new regulatory requirements designed to reduce the introduction of invasive aquatic species from ship traffic. We tested the efficacy of hydroxide stabilization as a ballast disinfection tool in replicated, sequential field trials on board the M/V Ranger III in waters of Lake Superior. Ballast water was introduced into each of four identical 1,320 L stainless steel tanks during a simulated ballasting operation. Two tanks were treated with NaOH to elevate the pH to 11.7 and the remaining two tanks were held as controls without pH alteration. After retention on board for 14–18 h, CO2-rich gas recovered from one of two diesel propulsion engines was sparged into tanks treated with NaOH for 2 h to force conversion of NaOH ultimately to sodium bicarbonate, thereby lowering pH to about 7.1. Prior to gas sparging, the engine exhaust was treated by a unique catalytic converter/wet scrubber process train to remove unwanted combustion byproducts and to provide cooling. The contents of each tank were then drained and filtered through 35-µm mesh plankton nets to collect all <span class="hlt">zooplankton</span>. The composition and relative survival of <span class="hlt">zooplankton</span> in each tank were evaluated by microscopy. <span class="hlt">Zooplankton</span> populations were dominated by rotifers, but copepods and cladocerans were also observed. Hydroxide stabilization was 100% effective in killing all <span class="hlt">zooplankton</span> present at the start of the tests. Our results suggest hydroxide stabilization has potential to be an effective and practical tool to disinfect ship ballast. Further, using CO2 released from the ship engine reduces emissions and the neutralized by product, sodium bicarbonate, can have beneficial impacts on the aquatic environment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70158599','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70158599"><span>Seasonal dynamics of <span class="hlt">zooplankton</span> in Columbia–Snake River reservoirs,with special emphasis on the invasive copepod Pseudodiaptomus forbesi</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Emerson, Joshua E.; Bollens, Stephen M.; Counihan, Timothy D.</p> <p>2015-01-01</p> <p>The Asian copepod Pseudodiaptomus forbesi has recently become established in the Columbia River. However, little is known about its ecology and effects on invaded ecosystems. We undertook a 2-year (July 2009 to June 2011) field study of the mesozooplankton in four reservoirs in the Columbia and Snake Rivers, with emphasis on the relation of the seasonal variation in distribution and abundance of P. forbesi to environmental variables. Pseudodiaptomus forbesi was abundant in three reservoirs; the <span class="hlt">zooplankton</span> community of the fourth reservoir contained no known non-indigenous taxa. The composition and seasonal succession of <span class="hlt">zooplankton</span> were similar in the three invaded reservoirs: a bloom of rotifers occurred in spring, native cyclopoid and cladoceran species peaked in abundance in summer, and P. forbesi was most abundant in late summer and autumn. In the uninvaded reservoir, total <span class="hlt">zooplankton</span> abundance was very low year-round. Multivariate ordination indicated that temperature and dissolved oxygen were strongly associated with <span class="hlt">zooplankton</span> community structure, with P. forbesi appearing to exhibit a single generation per year . The broad distribution and high abundance of P. forbesi in the Columbia–Snake River System could result in ecosystem level effects in areas intensively managed to improve conditions for salmon and other commercially and culturally important fish species. </p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA248282','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA248282"><span>Distribution and Taxonomy of <span class="hlt">Zooplankton</span> in the Alboran Sea and Adjacent Western Mediterranean: A Literature Survey and Field Guide</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1991-09-01</p> <p>Distribution List for Technical Report Exchange I Attn: Stella Sanchez-Wade Pell Marine Science Library Documents Section University of Rhode IslandU...partly on the geographic distribution of marine laboratories on the coasts of these seas. Upwelling regions near Messina, Naples and Nice in the...into three main sections . The first considers gjneral patterns of <span class="hlt">zooplankton</span> distribution. This is intended as an overview of hydrography, <span class="hlt">zooplankton</span></p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/10488436','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/10488436"><span>Impact of moderate silver carp biomass gradient on <span class="hlt">zooplankton</span> communities in a eutrophic reservoir. Consequences for the use of silver carp in biomanipulation.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Domaizon, I; Dévaux, J</p> <p>1999-07-01</p> <p>We examined the impacts of moderate gradient silver carp biomass (five levels from 0 to 36 g.m-3, i.e. about 0-792 kg.ha-1) on <span class="hlt">zooplankton</span> communities of the eutrophic Villerest reservoir (France). During our mesocosm experiment changes in <span class="hlt">zooplankton</span> assemblages were dependent on silver carp biomass. In the fishless and low fish biomass treatments, <span class="hlt">zooplankton</span> abundance increased through time, owing to a peak in cladoceran density, but decreased (mainly cladocerans) at highest fish biomass. Copepods and rotifers were less affected at the highest fish biomass and dominated <span class="hlt">zooplankton</span> communities. We highlighted that the presence of high silver carp biomass could lead to changes in phytoplankton assemblage via the impact on herbivorous <span class="hlt">zooplankton</span>. Since silver carp efficiently graze on particles > 20 microns, the suppression of herbivorous cladocerans could result in an increase in small size algae (< 20 microns) abundance since these species would be released from grazers as well as competitors (large algae grazed by silver carp) and nutrients levels would be enhanced by fish internal loading. Our results showed that the use of low silver carp biomass (< 200 kg.ha-1) would allow us to minimize these negative effects.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1000408','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1000408"><span>Effects of alewife predation on <span class="hlt">zooplankton</span> populations in Lake Michigan</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Wells, LaRue</p> <p>1970-01-01</p> <p>The <span class="hlt">zooplankton</span> populations in southeastern Lake Michigan underwent striking, size-related changes between 1954 and 1966. Forms that decline sharply were the largest cladocerans (Leptodora kindtii, Daphnia galeata, and D. retrocurva), the largest calanoid copepods (Limnocalanus macrurus, Epischura lacustris, and Diaptomus sicilis), and the largest cyclopoid copepod (Mesocyclops edax). Two of these, D. galeata and M. edax (both abundant in 1954), became extremely rare. Certain medium-sized or small species increased in numbers: Daphnia longiremis, Holopedium gibberum, Polyphemus pediculus, Bosmina longirostris, Bosmina coregoni, Ceriodaphnia sp., Cyclops bicuspidatus, Cyclops vernalis, and Diaptomus ashlandi. Evidence is strong that the changes were due to selective predation by alewives. The alewife was uncommon in southeastern Lake Michigan in 1954 but had increased to enormous proportions by 1966; there was a massive dieoff in spring 1967, and abundance remained relatively low in 1968. The composition of <span class="hlt">zooplankton</span> populations in 1968 generally had shifted back toward that of 1954, although D. galeata and M. edax remained rare. The average size, and size at onset of maturity, of D. retrocurva decreased noticeably between 1954 and 1966 but increased between 1966 and 1968.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA598594','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA598594"><span>Field Demonstration of a Broadband Acoustical Backscattering System Mounted on a REMUS-100 for Inferences of <span class="hlt">Zooplankton</span> Size and Abundancy</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2011-09-30</p> <p>the Rayleigh-to-geometric scattering transition is within the frequency band of the WHOI broadband system (e.g., copepods ), and either larger fluid...that numerical abundance of <span class="hlt">zooplankton</span> was dominated by small copepods that were relatively evenly distributed throughout the water-column...indication in either the MONESS or the VPR that the acoustic scattering layer was correlated to an increased abundance of <span class="hlt">zooplankton</span>. Small copepods</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017CSR...132...58G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017CSR...132...58G"><span>Plankton dynamics and <span class="hlt">zooplankton</span> carcasses in a mid-latitude estuary and their contributions to the local particulate organic carbon pool</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Giesecke, R.; Vallejos, T.; Sanchez, M.; Teiguiel, K.</p> <p>2017-01-01</p> <p>Estuaries are among the most productive aquatic ecosystems in coastal areas. Their productivity is linked to the formation of fronts generating mixing and retention of nutrients that can be used by autotrophs. Estuaries exhibit strong thermoclines and haloclines that may significantly affect <span class="hlt">zooplankton</span> survival, while producing carcasses that could act as an alternative pathway of particulate organic carbon recycling. We investigated the in situ abundance of dead mero- and holozooplankton along the Valdivia River estuary, south-central Chile, during contrasting fresh water discharge conditions (summer, winter and spring), including the potential contribution of <span class="hlt">zooplankton</span> carcasses to the particulate organic carbon standing stock along the estuary. <span class="hlt">Zooplankton</span> samples were collected at four stations along the estuary during high tide at the surface, in the pycnocline and below the pycnocline. During autumn and winter the <span class="hlt">zooplankton</span> community was mostly dominated by copepods, while during summer barnacle nauplii outnumbered copepods fourfold on average. During this study 29.5%±1.8% S.E. of the net-captured <span class="hlt">zooplankton</span> community, including Acartia tonsa, Paracalanus spp., Oikopleura spp., copepod nauplii, Podon spp. and barnacle nauplii, appeared to have been dead at collection. Highest overall mortality occurred in winter (44±3.1% S.E.), with lower mortality during spring (26±3.8% S.E.) and summer (19±2.7% S.E.). The instantaneous mortality of copepods (Paracalanus spp. and A. tonsa) and copepod naupliar stages was always greater at the surface, associated with brackish water, while dead barnacle nauplii were usually distributed homogenously in the water column. The <span class="hlt">zooplankton</span> carcass standing stock averaged 0.2 mg C m-3 (in spring and winter) contributing to 0.03-0.22% of the POC produced in the estuary, while in summer carcasses reached up to 2.99 mg C m-3 with a contribution up to 0.87% of the POC. The summer contribution is linked to the presence of</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2002DSRI...49.2035R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2002DSRI...49.2035R"><span>Acoustic backscatter measurements with a 153 kHz ADCP in the northeastern Gulf of Mexico: determination of dominant <span class="hlt">zooplankton</span> and micronekton scatterers</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ressler, Patrick H.</p> <p>2002-11-01</p> <p>A 153 kHz narrowband acoustic Doppler current profiler (ADCP) was used to measure volume backscattering strength ( Sv) during a deepwater oceanographic survey of cetacean and seabird habitat in the northeastern Gulf of Mexico. Sv was positively related to <span class="hlt">zooplankton</span> and micronekton biomass (wet displacement volume) in 'sea-truth' net hauls made with a 1 m 2 Multiple Opening-Closing Net Environmental Sensing System (MOCNESS). A subset of these MOCNESS tows was used to explore the relationship between the numerical densities of various taxonomic categories of <span class="hlt">zooplankton</span> and the ADCP backscatter signal. Crustaceans, small fish, and fragments of non-gas-bearing siphonophores in the net samples all showed significant, positive correlations with the acoustic signal, while other types of gelatinous <span class="hlt">zooplankton</span>, pteropod and atlantid molluscs, and gas-filled siphonophore floats showed no significant correlation with Sv. Previously published acoustic scattering models for <span class="hlt">zooplankton</span> were used to calculate expected scattering for several general <span class="hlt">zooplankton</span> types and sizes for comparison with the field data. Even though gelatinous material often made up a large fraction of the total biomass, crustaceans, small fish, and pteropods were most likely the important scatterers. Since only crustacean and small fish densities were significantly correlated with Sv, it is suggested that Sv at 153 kHz can be used as a relative proxy for the abundance of these organisms in the Gulf of Mexico.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_14 --> <div id="page_15" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="281"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29883873','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29883873"><span>Modeling species richness and abundance of phytoplankton and <span class="hlt">zooplankton</span> in radioactively contaminated water bodies.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Shuryak, Igor</p> <p>2018-06-05</p> <p>Water bodies polluted by the Mayak nuclear plant in Russia provide valuable information on multi-generation effects of radioactive contamination on freshwater organisms. For example, lake Karachay was probably the most radioactive lake in the world: its water contained ∼2 × 10 7 Bq/L of radionuclides and estimated dose rates to plankton exceeded 5 Gy/h. We performed quantitative modeling of radiation effects on phytoplankton and <span class="hlt">zooplankton</span> species richness and abundance in Mayak-contaminated water bodies. Due to collinearity between radioactive contamination, water body size and salinity, we combined these variables into one (called HabitatFactors). We employed a customized machine learning approach, where synthetic noise variables acted as benchmarks of predictor performance. HabitatFactors was the only predictor that outperformed noise variables and, therefore, we used it for parametric modeling of plankton responses. Best-fit model predictions suggested 50% species richness reduction at HabitatFactors values corresponding to dose rates of 10 4 -10 5  μGy/h for phytoplankton, and 10 3 -10 4  μGy/h for <span class="hlt">zooplankton</span>. Under conditions similar to those in lake Karachay, best-fit models predicted 81-98% species richness reductions for various taxa (Cyanobacteria, Bacillariophyta, Chlorophyta, Rotifera, Cladocera and Copepoda), ∼20-300-fold abundance reduction for total <span class="hlt">zooplankton</span>, but no abundance reduction for phytoplankton. Rotifera was the only taxon whose fractional abundance increased with contamination level, reaching 100% in lake Karachay, but Rotifera species richness declined with contamination level, as in other taxa. Under severe radioactive and chemical contamination, one species of Cyanobacteria (Geitlerinema amphibium) dominated phytoplankton, and rotifers from the genus Brachionus dominated <span class="hlt">zooplankton</span>. The modeling approaches proposed here are applicable to other radioecological data sets. The results provide quantitative information</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25367396','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25367396"><span>Combined effects of <span class="hlt">zooplankton</span> grazing and dispersal on the <span class="hlt">diversity</span> and assembly mechanisms of bacterial metacommunities.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Berga, Mercè; Östman, Örjan; Lindström, Eva S; Langenheder, Silke</p> <p>2015-07-01</p> <p>Effects of dispersal and the presence of predators on <span class="hlt">diversity</span>, assembly and functioning of bacterial communities are well studied in isolation. In reality, however, dispersal and trophic interactions act simultaneously and can therefore have combined effects, which are poorly investigated. We performed an experiment with aquatic metacommunities consisting of three environmentally different patches and manipulated dispersal rates among them as well as the presence or absence of the keystone species Daphnia magna. Daphnia magna reduced both local and regional <span class="hlt">diversity</span>, whereas dispersal increased local <span class="hlt">diversity</span> but decreased beta-<span class="hlt">diversity</span> having no net effect on regional <span class="hlt">diversity</span>. Dispersal modified the assembly mechanisms of bacterial communities by increasing the degree of determinism. Additionally, the combination of the D. magna and dispersal increased the importance of deterministic processes, presumably because predator-tolerant taxa were spread in the metacommunity via dispersal. Moreover, the presence of D. magna affected community composition, increased community respiration rates but did not affect bacterial production or abundance, whereas dispersal slightly increased bacterial production. In conclusion, our study suggests that predation by a keystone species such as D. magna and dispersal additively influence bacterial <span class="hlt">diversity</span>, assembly processes and ecosystem functioning. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61267&keyword=copepod&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61267&keyword=copepod&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>SIMULATING TEMPORAL VARIATIONS IN NUTRIENT, PHYTOPLANKTON, AND <span class="hlt">ZOOPLANKTON</span> ON THE INNER OREGON SHELF</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The objective of this study is to use a numerical model to examine the linkages between physical processes and temporal variability in the plankton dynamics in a coastal upwelling system. We used a nutrient-phytoplankton-<span class="hlt">zooplankton</span> model coupled to a two-dimensional circulation...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20584098','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20584098"><span>Prey dispersal rate affects prey species composition and trait <span class="hlt">diversity</span> in response to multiple predators in metacommunities.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Howeth, Jennifer G; Leibold, Mathew A</p> <p>2010-09-01</p> <p>1. Recent studies indicate that large-scale spatial processes can alter local community structuring mechanisms to determine local and regional assemblages of predators and their prey. In metacommunities, this may occur when the functional <span class="hlt">diversity</span> represented in the regional predator species pool interacts with the rate of prey dispersal among local communities to affect prey species <span class="hlt">diversity</span> and trait composition at multiple scales. 2. Here, we test for effects of prey dispersal rate and spatially and temporally heterogeneous predation from functionally dissimilar predators on prey structure in pond mesocosm metacommunities. An experimental metacommunity consisted of three pond mesocosm communities supporting two differentially size-selective invertebrate predators and their <span class="hlt">zooplankton</span> prey. In each metacommunity, two communities maintained constant predation and supported either Gyrinus sp. (Coleoptera) or Notonecta ungulata (Hemiptera) predators generating a spatial prey refuge while the third community supported alternating predation from Gyrinus sp. and N. ungulata generating a temporal prey refuge. Mesocosm metacommunities were connected at either low (0.7% day(-1)) or high (10% day(-1)) planktonic prey dispersal. The <span class="hlt">diversity</span>, composition and body size of <span class="hlt">zooplankton</span> prey were measured at local and regional (metacommunity) scales. 3. Metacommunities experiencing the low prey dispersal rate supported the greatest regional prey species <span class="hlt">diversity</span> (H') and evenness (J'). Neither dispersal rate nor predation regime affected local prey <span class="hlt">diversity</span> or evenness. The spatial prey refuge at low dispersal maintained the largest difference in species composition and body size <span class="hlt">diversity</span> between communities under Gyrinus and Notonecta predation, suggesting that species sorting was operating at the low dispersal rate. There was no effect of dispersal rate on species <span class="hlt">diversity</span> or body size distribution in the temporal prey refuge. 4. The frequency distribution, but not</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28369846','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28369846"><span>Habitat size modulates the influence of heterogeneity on species richness patterns in a model <span class="hlt">zooplankton</span> community.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Schuler, Matthew S; Chase, Jonathan M; Knight, Tiffany M</p> <p>2017-06-01</p> <p>Habitat heterogeneity is a primary mechanism influencing species richness. Despite the general expectation that increased heterogeneity should increase species richness, there is considerable variation in the observed relationship, including many studies that show negative effects of heterogeneity on species richness. One mechanism that can create such disparate results is the predicted trade-off between habitat area and heterogeneity, sometimes called the area-heterogeneity-trade-off (AHTO) hypothesis. The AHTO hypothesis predicts positive effects of heterogeneity on species richness in large habitats, but negative effects in small habitats. We examined the interplay between habitat size and habitat heterogeneity in experimental mesocosms that mimic freshwater ponds, and measured responses in a species-rich <span class="hlt">zooplankton</span> community. We used the AHTO hypothesis and related mechanisms to make predictions about how heterogeneity would affect species richness and <span class="hlt">diversity</span> in large compared to small habitats. We found that heterogeneity had a positive influence on species richness in large, but not small habitats, and that this likely resulted because habitat specialists were able to persist only when habitat size was sufficiently large, consistent with the predictions of the AHTO hypothesis. Our results emphasize the importance of considering context (e.g., habitat size in this case) when investigating the relative importance of ecological drivers of <span class="hlt">diversity</span>, like heterogeneity. © 2017 by the Ecological Society of America.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70042197','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70042197"><span>Seasonal <span class="hlt">zooplankton</span> dynamics in Lake Michigan: disentangling impacts of resource limitation, ecosystem engineering, and predation during a critical ecosystem transition</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Vanderploeg, Henry A.; Pothoven, Steven A.; Fahnenstiel, Gary L.; Cavaletto, Joann F.; Liebig, James R.; Stow, Craig Stow; Nalepa, Thomas F.; Madenjian, Charles P.; Bunnell, David B.</p> <p>2012-01-01</p> <p>We examined seasonal dynamics of <span class="hlt">zooplankton</span> at an offshore station in Lake Michigan from 1994 to 2003 and 2007 to 2008. This period saw variable weather, declines in planktivorous fish abundance, the introduction and expansion of dreissenid mussels, and a slow decline in total phosphorus concentrations. After the major expansion of mussels into deep water (2007–2008), chlorophyll in spring declined sharply, Secchi depth increased markedly in all seasons, and planktivorous fish biomass declined to record-low levels. Overlaying these dramatic ecosystem-level changes, the <span class="hlt">zooplankton</span> community exhibited complex seasonal dynamics between 1994–2003 and 2007–2008. Phenology of the <span class="hlt">zooplankton</span> maximum was affected by onset of thermal stratification, but there was no other discernable effect due to temperature. Interannual variability in <span class="hlt">zooplankton</span> biomass during 1994 and 2003 was strongly driven by planktivorous fish abundance, particularly age-0 and age-1 alewives. In 2007–2008, there were large decreases in Diacyclops thomasi and Daphnia mendotae possibly caused by food limitation as well as increased predation and indirect negative effects from increases in Bythotrephes longimanus abundance and in foraging efficiency associated with increased light penetration. The Bythotrephes increase was likely driven in part by decreased predation from yearling and older alewife. While there was a major decrease in epilimnetic–metalimnetic herbivorous cladocerans in 2007–2008, there was an increase in large omnivorous and predacious calanoid copepods, especially those in the hypolimnion. Thus, changes to the <span class="hlt">zooplankton</span> community are the result of cascading, synergistic interactions, including a shift from vertebrate to invertebrate planktivory and mussel ecosystem impacts on light climate and chlorophyll.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29614408','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29614408"><span>Mixture of commercial herbicides based on 2,4-D and glyphosate mixture can suppress the emergence of <span class="hlt">zooplankton</span> from sediments.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Portinho, Jorge L; Nielsen, Daryl L; Daré, Luana; Henry, Raoul; Oliveira, Régis C; Branco, Ciro C Z</p> <p>2018-07-01</p> <p>It is generally assumed that <span class="hlt">zooplankton</span> can recolonize lakes that have been exposed to pesticides, via their dormant egg banks. Hitherto, few studies have evaluated the relative importance of dormant egg bank recruitment in the re-establishment of <span class="hlt">zooplankton</span> communities in the presence of pesticide. This study investigated the effects of commercial products Bratt ® (a.i. 2,4-D), Roundup ® (a.i. glyphosate) and their mixture on the emergence (abundance and taxon richness) of dormant <span class="hlt">zooplankton</span> egg banks from natural lake sediment. Sediment samples were collected from the surface sediment (<10 cm depth) in four lakes in Southeast São Paulo, Brazil. We performed a hatching experiment, in which natural lake sediments containing dormant eggs were exposed separately to Bratt ® (applied concentrations ranging from 0.30 to 20 mg L -1 ), Roundup ® (0.28-8.5 mg L -1 ), and combined mixtures of all concentrations, plus one control (non-exposure to formulated herbicides) for a period of 28 days. All tested concentrations of Bratt ® , Roundup ® and their mixture reduced the abundance and taxon richness of emerging <span class="hlt">zooplankton</span> (except 2 mg L -1 of Bratt ® ). This effect was more pronounced in rotifers. In comparison, there were no negative effects on the emergence of microcrustaceans. These findings suggest that commercial products Bratt ® , Roundup ® and their mixture can suppress the emergence of rotifers, thereby influencing <span class="hlt">zooplankton</span> recruitment potential in lakes impacted by the presence of these commercial herbicides. Our results stress the importance of the need for additional studies to assess the effects of pesticides on dormant egg banks. Copyright © 2018 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRII.135...27P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRII.135...27P"><span>Spatial heterogeneity in <span class="hlt">zooplankton</span> summer distribution in the eastern Chukchi Sea in 2012-2013 as a result of large-scale interactions of water masses</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Pinchuk, Alexei I.; Eisner, Lisa B.</p> <p>2017-01-01</p> <p>Interest in the Arctic shelf ecosystems has increased in recent years as the climate has rapidly warmed and sea ice declined. These changing conditions prompted the broad-scale multidisciplinary Arctic Ecosystem integrated survey (Arctic Eis) aimed at systematic, comparative analyses of interannual variability of the shelf ecosystem. In this study, we compared <span class="hlt">zooplankton</span> composition and geographical distribution in relation to water properties on the eastern Chukchi and northern Bering Sea shelves during the summers of 2012 and 2013. In 2012, waters of Pacific origin prevailed over the study area carrying expatriate oceanic species (e.g. copepods Neocalanus spp., Eucalanus bungii) from the Bering Sea outer shelf well onto the northeastern Chukchi shelf. In contrast, in 2013, <span class="hlt">zooplankton</span> of Pacific origin was mainly distributed over the southern Chukchi shelf, suggesting a change of advection pathways into the Arctic. These changes also manifested in the emergence of large lipid-rich Arctic <span class="hlt">zooplankton</span> (e.g. Calanus hyperboreus) on the northeastern Chukchi shelf in 2013. The predominant copepod Calanus glacialis was composed of two distinct populations originating from the Bering Sea and from the Arctic, with the Arctic population expanding over a broader range in 2013. The observed interannual variability in <span class="hlt">zooplankton</span> distribution on the Chukchi Sea shelf may be explained by previously described systematic oceanographic patterns derived from long-term observations. Variability in oceanic circulation and related <span class="hlt">zooplankton</span> distributions (e.g. changes in southwestward advection of C. hyperboreus) may impact keystone predators such as Arctic Cod (Boreogadus saida) that feed on energy-rich <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29029024','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29029024"><span><span class="hlt">Diverse</span>PathsJ: <span class="hlt">diverse</span> shortest paths for bioimage <span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Uhlmann, Virginie; Haubold, Carsten; Hamprecht, Fred A; Unser, Michael</p> <p>2018-02-01</p> <p>We introduce a formulation for the general task of finding <span class="hlt">diverse</span> shortest paths between two end-points. Our approach is not linked to a specific biological problem and can be applied to a large variety of images thanks to its generic implementation as a user-friendly ImageJ/Fiji plugin. It relies on the introduction of additional layers in a Viterbi path graph, which requires slight modifications to the standard Viterbi algorithm rules. This layered graph construction allows for the specification of various constraints imposing <span class="hlt">diversity</span> between solutions. The software allows obtaining a collection of <span class="hlt">diverse</span> shortest paths under some user-defined constraints through a convenient and user-friendly interface. It can be used alone or be integrated into larger image <span class="hlt">analysis</span> pipelines. http://bigwww.epfl.ch/algorithms/diversepathsj. michael.unser@epfl.ch or fred.hamprecht@iwr.uni-heidelberg.de. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26970874','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26970874"><span>Changes of concentrations and possibility of accumulation of bisphenol A and alkylphenols, depending on biomass and composition, in <span class="hlt">zooplankton</span> of the Southern Baltic (Gulf of Gdansk).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Staniszewska, Marta; Nehring, Iga; Mudrak-Cegiołka, Stella</p> <p>2016-06-01</p> <p>The focus of the present study was to find the relationship between concentrations of bisphenol A (BPA), 4-tert-octylphenol (OP) and 4-nonylphenol (NP) in <span class="hlt">zooplankton</span> and seasonal changes in the composition and biomass of particular <span class="hlt">zooplankton</span> taxa in the Gulf of Gdansk (Southern Baltic) in the years 2011-2012. Assays of BPA, OP and NP in water and <span class="hlt">zooplankton</span> samples were performed using the HPLC/FL system. High mean concentrations of the studied compounds, determined in spring (405.9 (BPA); 25.7 (OP); 111.2 (NP) ng g(-1) dw), can be linked to the high proportion of meroplankton in that season. Rotifera also had an influence on the rise in concentrations of the studied compounds but to a lesser degree, while the lowest concentrations (determined in summer) can be associated with the high participation of Copepoda and Cladocera in <span class="hlt">zooplankton</span> biomass. It was also observed that juvenile forms can be more susceptible to accumulating endocrine disrupting compounds (EDCs). This is indicated by the positive correlation between BPA concentration in <span class="hlt">zooplankton</span> and the proportion of Copepoda nauplii biomass in spring (r = 0.90; p < 0.05). In most cases, greater <span class="hlt">zooplankton</span> biomass accumulated higher concentrations and loads of the studied compounds. With biomass growth (to 123.32 μg m(-3)), the bioconcentration factor also rose (to max 46.1·10(3)), demonstrating that unlike typical hydrophobic compounds the studied EDCs do not become "diluted" in <span class="hlt">zooplankton</span> biomass. The highest BPA concentrations from all compounds may be connected with anthropogenic sources located in the coastal zone. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUSMOS23B..16M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUSMOS23B..16M"><span><span class="hlt">Zooplankton</span> Structure of the La Paz Bay southern Gulf of California and their Relation with the Hydrography during the summer 2004</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mojica-Ramirez, E.; Monreal-Gomez, M. A.; Salas-de-Leon, D. A.</p> <p>2007-05-01</p> <p>Physical and biological data were gathered in Bay of La Paz, Southern Gulf of California, in summer, 2004. These include hydrographical data, ADP currents, backscattering signals, in vivo natural fluorescence, as well as, <span class="hlt">zooplankton</span> samples. The topography of the 15°C shows a dome in the central part of the bay that becomes deeper towards the periphery suggesting the existence of a cyclonic eddy. The 35 salinity topography shows an uplift of 35 m. The eddy has a north-south diameter of approximately 35 km and cover almost all the bay. The <span class="hlt">zooplankton</span> samples reveal the existence of 23 groups the most abundant were cladocera, copepods, siphonophores, chaetognaths and larvae of crustaceans. The <span class="hlt">zooplankton</span> biomass presents higher values in the periphery of the eddy indicating an influence of the cyclonic circulation in their distribution.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19263883','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19263883"><span>Recovery after local extinction: factors affecting re-establishment of alpine lake <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Knapp, Roland A; Sarnelle, Orlando</p> <p>2008-12-01</p> <p>The introduction of fishes into naturally fishless mountain lakes often results in the extirpation of large-bodied <span class="hlt">zooplankton</span> species. The ability to predict whether or not particular species will recover following fish removal is critically important for the design and implementation of lake restoration efforts but is currently not possible because of a lack of information on what factors affect recovery. The objective of this study was to identify the factors influencing recovery probability in two large-bodied <span class="hlt">zooplankton</span> species following fish removal. We predicted that (1) Daphnia melanica would have a higher probability of recovery than Hesperodiaptomus shoshone due to differences in reproductive mode (D. melanica is parthenogenetic, H. shoshone is obligately sexual), (2) recovery probability would be a decreasing function of fish residence time due to the negative relationship between fish residence time and size of the egg bank, and (3) recovery probability would be an increasing function of lake depth as a consequence of a positive relationship between lake depth and egg bank size. To test these predictions, we sampled contemporary <span class="hlt">zooplankton</span> populations and collected paleolimnological data from 44 naturally fishless lakes that were stocked with trout for varying lengths of time before reverting to a fishless condition. D. melanica had a significantly higher probability of recovery than did H. shoshone (0.82 vs. 0.54, respectively). The probability of recovery for H. shoshone was also significantly influenced by lake depth, fish residence time, and elevation, but only elevation influenced the probability of recovery in D. melanica. These results are consistent with between-species differences in reproductive mode combined with the much greater longevity of diapausing eggs in D. melanica than in H. shoshone. Our data also suggest that H. shoshone will often fail to recover in lakes with fish residence times exceeding 50 years.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27920375','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27920375"><span>Eco-evolutionary dynamics in urbanized landscapes: evolution, species sorting and the change in <span class="hlt">zooplankton</span> body size along urbanization gradients.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Brans, Kristien I; Govaert, Lynn; Engelen, Jessie M T; Gianuca, Andros T; Souffreau, Caroline; De Meester, Luc</p> <p>2017-01-19</p> <p>Urbanization causes both changes in community composition and evolutionary responses, but most studies focus on these responses in isolation. We performed an integrated <span class="hlt">analysis</span> assessing the relative contribution of intra- and interspecific trait turnover to the observed change in <span class="hlt">zooplankton</span> community body size in 83 cladoceran communities along urbanization gradients quantified at seven spatial scales (50-3200 m radii). We also performed a quantitative genetic <span class="hlt">analysis</span> on 12 Daphnia magna populations along the same urbanization gradient. Body size in <span class="hlt">zooplankton</span> communities generally declined with increasing urbanization, but the opposite was observed for communities dominated by large species. The contribution of intraspecific trait variation to community body size turnover with urbanization strongly varied with the spatial scale considered, and was highest for communities dominated by large cladoceran species and at intermediate spatial scales. Genotypic size at maturity was smaller for urban than for rural D. magna populations and for animals cultured at 24°C compared with 20°C. While local genetic adaptation likely contributed to the persistence of D. magna in the urban heat islands, buffering for the phenotypic shift to larger body sizes with increasing urbanization, community body size turnover was mainly driven by non-genetic intraspecific trait change.This article is part of the themed issue 'Human influences on evolution, and the ecological and societal consequences'. © 2016 The Author(s).</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5182426','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5182426"><span>Eco-evolutionary dynamics in urbanized landscapes: evolution, species sorting and the change in <span class="hlt">zooplankton</span> body size along urbanization gradients</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Souffreau, Caroline</p> <p>2017-01-01</p> <p>Urbanization causes both changes in community composition and evolutionary responses, but most studies focus on these responses in isolation. We performed an integrated <span class="hlt">analysis</span> assessing the relative contribution of intra- and interspecific trait turnover to the observed change in <span class="hlt">zooplankton</span> community body size in 83 cladoceran communities along urbanization gradients quantified at seven spatial scales (50–3200 m radii). We also performed a quantitative genetic <span class="hlt">analysis</span> on 12 Daphnia magna populations along the same urbanization gradient. Body size in <span class="hlt">zooplankton</span> communities generally declined with increasing urbanization, but the opposite was observed for communities dominated by large species. The contribution of intraspecific trait variation to community body size turnover with urbanization strongly varied with the spatial scale considered, and was highest for communities dominated by large cladoceran species and at intermediate spatial scales. Genotypic size at maturity was smaller for urban than for rural D. magna populations and for animals cultured at 24°C compared with 20°C. While local genetic adaptation likely contributed to the persistence of D. magna in the urban heat islands, buffering for the phenotypic shift to larger body sizes with increasing urbanization, community body size turnover was mainly driven by non-genetic intraspecific trait change. This article is part of the themed issue ‘Human influences on evolution, and the ecological and societal consequences’. PMID:27920375</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28545095','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28545095"><span>Feeding on dispersed vs. aggregated particles: The effect of <span class="hlt">zooplankton</span> feeding behavior on vertical flux.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Koski, Marja; Boutorh, Julia; de la Rocha, Christina</p> <p>2017-01-01</p> <p><span class="hlt">Zooplankton</span> feeding activity is hypothesized to attenuate the downward flux of elements in the ocean. We investigated whether the <span class="hlt">zooplankton</span> community composition could influence the flux attenuation, due to the differences of feeding modes (feeding on dispersed vs. aggregated particles) and of metabolic rates. We fed 5 copepod species-three calanoid, one harpacticoid and one poecilamastoid-microplankton food, in either dispersed or aggregated form and measured rates of respiration, fecal pellet production and egg production. Calanoid copepods were able to feed only on dispersed food; when their food was introduced as aggregates, their pellet production and respiration rates decreased to rates observed for starved individuals. In contrast, harpacticoids and the poecilamastoid copepod Oncaea spp. were able to feed only when the food was in the form of aggregates. The sum of copepod respiration, pellet production and egg production rates was equivalent to a daily minimum carbon demand of ca. 10% body weight-1 for all non-feeding copepods; the carbon demand of calanoids feeding on dispersed food was 2-3 times greater, and the carbon demand of harpacticoids and Oncaea spp. feeding on aggregates was >7 times greater, than the resting rates. The <span class="hlt">zooplankton</span> species composition combined with the type of available food strongly influences the calculated carbon demand of a copepod community, and thus also the attenuation of vertical carbon flux.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5435449','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5435449"><span>Feeding on dispersed vs. aggregated particles: The effect of <span class="hlt">zooplankton</span> feeding behavior on vertical flux</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Boutorh, Julia; de la Rocha, Christina</p> <p>2017-01-01</p> <p><span class="hlt">Zooplankton</span> feeding activity is hypothesized to attenuate the downward flux of elements in the ocean. We investigated whether the <span class="hlt">zooplankton</span> community composition could influence the flux attenuation, due to the differences of feeding modes (feeding on dispersed vs. aggregated particles) and of metabolic rates. We fed 5 copepod species—three calanoid, one harpacticoid and one poecilamastoid–microplankton food, in either dispersed or aggregated form and measured rates of respiration, fecal pellet production and egg production. Calanoid copepods were able to feed only on dispersed food; when their food was introduced as aggregates, their pellet production and respiration rates decreased to rates observed for starved individuals. In contrast, harpacticoids and the poecilamastoid copepod Oncaea spp. were able to feed only when the food was in the form of aggregates. The sum of copepod respiration, pellet production and egg production rates was equivalent to a daily minimum carbon demand of ca. 10% body weight-1 for all non-feeding copepods; the carbon demand of calanoids feeding on dispersed food was 2–3 times greater, and the carbon demand of harpacticoids and Oncaea spp. feeding on aggregates was >7 times greater, than the resting rates. The <span class="hlt">zooplankton</span> species composition combined with the type of available food strongly influences the calculated carbon demand of a copepod community, and thus also the attenuation of vertical carbon flux. PMID:28545095</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28851143','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28851143"><span>Exposure and effects of sediment-spiked fludioxonil on macroinvertebrates and <span class="hlt">zooplankton</span> in outdoor aquatic microcosms.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yin, Xiao H; Brock, Theo C M; Barone, Lidia E; Belgers, J Dick M; Boerwinkel, Marie-Claire; Buijse, Laura; van Wijngaarden, René P A; Hamer, Mick; Roessink, Ivo</p> <p>2018-01-01</p> <p>Information from effects of pesticides in sediments at an ecosystem level, to validate current and proposed risk assessment procedures, is scarce. A sediment-spiked outdoor freshwater microcosm experiment was conducted with fludioxonil (lipophilic, non-systemic fungicide) to study exposure dynamics and treatment-related responses of benthic and pelagic macroinvertebrates and <span class="hlt">zooplankton</span>. Besides blank control and solvent control systems the experiment had six different treatment levels (1.7-614mga.s./kg dry sediment) based around the reported 28-d No Observed Effect Concentration (NOEC) for Chironomus riparius (40mga.s./kg dry sediment). Twelve systems were available per treatment of which four were sacrificed on each of days 28, 56 and 84 after microcosm construction. Fludioxonil persisted in the sediment and mean measured concentrations were 53-82% of the initial concentration after 84days. The dissipation rate increased with the treatment level. Also exposure concentrations in overlying water were long-term, with highest concentrations 28days after initiation of the experiment. Sediment-dwelling Oligochaeta and pelagic Rotifera and Cladocera showed the most pronounced treatment-related declines. The most sensitive sediment-dwelling oligochaete was Dero digitata (population NOEC 14.2mga.s./kg dry sediment). The same NOEC was calculated for the sediment-dwelling macroinvertebrate community. The most sensitive <span class="hlt">zooplankton</span> species was the cladoceran Diaphanosoma brachyurum (NOEC of 1.6μga.s./L in overlying water corresponding to 5.0mga.s./kg dry sediment). At the two highest treatments several rotifer taxa showed a pronounced decrease, while the <span class="hlt">zooplankton</span> community-level NOEC was 5.6μga.s./L (corresponding to 14.2mga.s./kg dry sediment). <span class="hlt">Zooplankton</span> taxa calanoid Copepoda and Daphnia gr. longispina showed a pronounced treatment-related increase (indirect effects). Consequently, an assessment factor of 10 to the chronic laboratory NOECs of Chironomus riparius</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29691934','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29691934"><span>Temperature gradient affects differentiation of gene expression and SNP allele frequencies in the dominant Lake Baikal <span class="hlt">zooplankton</span> species.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bowman, Larry L; Kondrateva, Elizaveta S; Timofeyev, Maxim A; Yampolsky, Lev Y</p> <p>2018-06-01</p> <p>Local adaptation and phenotypic plasticity are main mechanisms of organisms' resilience in changing environments. Both are affected by gene flow and are expected to be weak in <span class="hlt">zooplankton</span> populations inhabiting large continuous water bodies and strongly affected by currents. Lake Baikal, the deepest and one of the coldest lakes on Earth, experienced epilimnion temperature increase during the last 100 years, exposing Baikal's <span class="hlt">zooplankton</span> to novel selective pressures. We obtained a partial transcriptome of Epischura baikalensis (Copepoda: Calanoida), the dominant component of Baikal's <span class="hlt">zooplankton</span>, and estimated SNP allele frequencies and transcript abundances in samples from regions of Baikal that differ in multiyear average surface temperatures. The strongest signal in both SNP and transcript abundance differentiation is the SW-NE gradient along the 600+ km long axis of the lake, suggesting isolation by distance. SNP differentiation is stronger for nonsynonymous than synonymous SNPs and is paralleled by differential survival during a laboratory exposure to increased temperature, indicating directional selection operating on the temperature gradient. Transcript abundance, generally collinear with the SNP differentiation, shows samples from the warmest, less deep location clustering together with the southernmost samples. Differential expression is more frequent among transcripts orthologous to candidate thermal response genes previously identified in model arthropods, including genes encoding cytoskeleton proteins, heat-shock proteins, proteases, enzymes of central energy metabolism, lipid and antioxidant pathways. We conclude that the pivotal endemic <span class="hlt">zooplankton</span> species in Lake Baikal exists under temperature-mediated selection and possesses both genetic variation and plasticity to respond to novel temperature-related environmental pressures. © 2018 John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME54A0915L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME54A0915L"><span>Drake Passage-Antarctic Peninsula Ecosystem Research: Spring and Fall <span class="hlt">Zooplankton</span> and Seabird Assemblages</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Loeb, V. J.; Chereskin, T. K.; Santora, J. A.</p> <p>2016-02-01</p> <p>Acoustic Doppler Current Profiler (ADCP) records from multiple "L.M. Gould" supply transits of Drake Passage from 1999 to present demonstrate spatial and temporal (diel, seasonal, annual and longer term) variability in acoustics backscattering. Acoustics backscattering strength in the upper water column corresponds to <span class="hlt">zooplankton</span> and nekton biomass that relates to seabird and mammal distribution and abundance. Recent results indicate that interannual variability in backscattering strength is correlated to climate indices. The interpretation of these ecological changes is severely limited because the sound scatterers previously had not been identified and linkages to upper trophic level predators are unknown. Net-tows, depth-referenced underwater videography and seabird/mammal visual surveys during spring 2014 and fall 2015 transits provided information on the taxonomic-size composition, distribution, aggregation and behavioral patterns of dominant ADCP backscattering organisms and relate these to higher level predator populations. The distribution and composition of <span class="hlt">zooplankton</span> species and seabird assemblages conformed to four biogeographic regions. Areas of elevated secondary productivity coincided with increased ADCP target strength with highest concentrations off Patagonia and Antarctic Peninsula and secondary peaks around the Polar Front. Small sized <span class="hlt">zooplankton</span> taxa dominated north of the Polar Front while larger taxa dominated to the south. Regionally important prey items likely are: copepods, amphipods, small euphausiids and fish (Patagonia); copepods, myctophids, shelled pteropods and squid (Polar Front); large euphausiids (Antarctic Peninsula). This study demonstrates that biological observations during "L.M. Gould" supply transits greatly augment the value of routinely collected ADCP and XBT data and provide basic information relevant to the impacts of climate change in this rapidly warming portion of the Southern Ocean</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME44B0859N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME44B0859N"><span>Fine-scale distribution of <span class="hlt">zooplankton</span> is linked to phytoplankton species composition and abundance in a North Norwegian fjord system</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Norrbin, F.; Priou, P. D.; Varela, A. P.</p> <p>2016-02-01</p> <p>We studied the influence of dense layers of phytoplankton and aggregates on shaping the vertical distribution of <span class="hlt">zooplankton</span> in a North Norwegian fjord using a Video Plankton Recorder (VPR). This instrument provided fine-scale vertical distribution (cm-m scale) of planktonic organisms as well as aggregates of marine snow in relation to environmental conditions. At the height - later stage of the spring phytoplankton bloom in May, the outer part of the fjord was dominated by Phaeocystis pouchetii, while diatoms (Chaetoceros spp.) were dominating in the innermost basin. Small copepods species like Pseudocalanus spp., Microsetella norvegica, and Oithona spp. prevailed over larger copepod species in the inner part of the fjord whereas the outer part was dominated by large copepods like Calanus finmarchicus. While the <span class="hlt">zooplankton</span> where spread out over the water column during the early stage of the bloom, in May they were linked to the phytoplankton vertical distribution and in the winter situation they were found in deeper waters. Herbivorous <span class="hlt">zooplankton</span> species were affected by phytoplankton species composition; C. finmarchicus and Pseudocalanus spp. avoided the dense layer of P. pouchetii while herbivorous <span class="hlt">zooplankton</span> matched the distribution of the diatom-dominated bloom. Small, omnivorous copepod species like Microsetella sp., Oithona sp. and Pseudocalanus sp. were often associated with dense layers of snow aggregates. This distribution may provide a shelter from predators as well as a food source. Natural or anthropogenic-induced changes in phytoplankton composition and aggregate distribution may thus influence food-web interactions.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_15 --> <div id="page_16" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="301"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=233339&keyword=nursery&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=233339&keyword=nursery&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span><span class="hlt">Zooplankton</span> Linkages between Rivers and Great Lakes: Case Study from the St. Louis River</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>In this case study, we characterized the spatial and seasonal distribution and abundance of <span class="hlt">zooplankton</span> within the hydrologically complex drowned river mouth of the St. Louis River, the second largest tributary to Lake Superior and an important fish nursery. We hypothesize that z...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015BGD....1218315H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015BGD....1218315H"><span>Dead zone or oasis in the open ocean? <span class="hlt">Zooplankton</span> distribution and migration in low-oxygen modewater eddies</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hauss, H.; Christiansen, S.; Schütte, F.; Kiko, R.; Edvam Lima, M.; Rodrigues, E.; Karstensen, J.; Löscher, C. R.; Körtzinger, A.; Fiedler, B.</p> <p>2015-11-01</p> <p>The eastern tropical North Atlantic (ETNA) features a mesopelagic oxygen minimum zone (OMZ) at approximately 300-600 m depth. Here, oxygen concentrations rarely fall below 40 μmol O2 kg-1, but are thought to decline in the course of climate change. The recent discovery of mesoscale eddies that harbour a shallow suboxic (< 5 μmol O2 kg-1) OMZ just below the mixed layer could serve to identify <span class="hlt">zooplankton</span> groups that may be negatively or positively affected by on-going ocean deoxygenation. In spring 2014, a detailed survey of a suboxic anticyclonic modewater eddy (ACME) was carried out near the Cape Verde Ocean Observatory (CVOO), combining acoustic and optical profiling methods with stratified multinet hauls and hydrography. The multinet data revealed that the eddy was characterized by an approximately 1.5-fold increase in total area-integrated <span class="hlt">zooplankton</span> abundance. A marked reduction in acoustic target strength (derived from shipboard ADCP, 75kHz) within the shallow OMZ at nighttime was evident. Acoustic scatterers were avoiding the depth range between about 85 to 120 m, where oxygen concentrations were lower than approximately 20 μmol O2 kg-1, indicating habitat compression to the oxygenated surface layer. This observation is confirmed by time-series observations of a moored ADCP (upward looking, 300 kHz) during an ACME transit at the CVOO mooring in 2010. Nevertheless, part of the diurnal vertical migration (DVM) from the surface layer to the mesopelagic continued through the shallow OMZ. Based upon vertically stratified multinet hauls, Underwater Vision Profiler (UVP5) and ADCP data, four strategies have been identified followed by <span class="hlt">zooplankton</span> in response to the eddy OMZ: (i) shallow OMZ avoidance and compression at the surface (e.g. most calanoid copepods, euphausiids), (ii) migration to the shallow OMZ core during daytime, but paying O2 debt at the surface at nighttime (e.g. siphonophores, Oncaea spp., eucalanoid copepods), (iii) residing in the shallow</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010PrOce..87...72K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010PrOce..87...72K"><span>The impact of different hydrographic conditions and <span class="hlt">zooplankton</span> communities on provisioning Little Auks along the West coast of Spitsbergen</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kwasniewski, Slawomir; Gluchowska, Marta; Jakubas, Dariusz; Wojczulanis-Jakubas, Katarzyna; Walkusz, Wojciech; Karnovsky, Nina; Blachowiak-Samolyk, Katarzyna; Cisek, Malgorzata; Stempniewicz, Lech</p> <p>2010-10-01</p> <p>Composition and abundance of <span class="hlt">zooplankton</span> were studied simultaneously with feeding ecology of planktivorous Little Auks ( Alle alle) in two different sea shelf areas of West Spitsbergen, Norway, in summer 2007. <span class="hlt">Zooplankton</span> was collected adjacent to bird colonies in Magdalenefjorden (influenced by Atlantic West Spitsbergen Current) and Hornsund (dominated by the Arctic Sørkapp Current). In spite of different hydrological situations, the abundance of prey preferred by Little Auks, Arctic Calanus glacialis copepodids stage V, among <span class="hlt">zooplankton</span> was similar in both localities. However, there was much more of Atlantic Calanus finmarchicus on the shelf outside Magdalenefjorden compared to Hornsund, resulting in different abundance ratios of Arctic to Atlantic copepods in the two areas (1:14 and 1:1, respectively). Even greater differences between the two areas occurred in the ratio of C. glacialis CV to other zooplankters, amounting to 1:40 in Magdalenefjorden and 1:6 in Hornsund. In both Little Auk colonies food brought by parents to their chicks contained mainly C. glacialis CV, albeit the proportion of this copepod in meals was significantly higher in Hornsund. Meals delivered to Little Auk chicks in Hornsund had also higher <span class="hlt">zooplankton</span> numbers, biomass and energy content. In Magdalenefjorden, on the other hand, a higher number of feedings and longer duration of foraging trips were recorded. These differences became more apparent with increasing energy requirements of the fast growing nestlings. This was probably a consequence of lower relative abundance of the Little Auks’ preferred prey in the sea adjacent to Magdalenefjorden colony. It seems that searching for the preferred food items, such as C. glacialis, among abundant but less favored C. finmarchicus, may require more time and energy demanding foraging behavior. As a consequence, foraging effort of the Little Auk parents from Magdalenefjorden was higher, and feeding efficiency lower, than those of birds from</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018ECSS..200..335C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018ECSS..200..335C"><span>Estuarine and marine diets of out-migrating Chinook Salmon smolts in relation to local <span class="hlt">zooplankton</span> populations, including harmful blooms</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chittenden, C. M.; Sweeting, R.; Neville, C. M.; Young, K.; Galbraith, M.; Carmack, E.; Vagle, S.; Dempsey, M.; Eert, J.; Beamish, R. J.</p> <p>2018-01-01</p> <p>Changes in food availability during the early marine phase of wild Chinook Salmon (O. tshawytscha) are being investigated as a cause of their recent declines in the Salish Sea. The marine survival of hatchery smolts, in particular, has been poor. This part of the Salish Sea Marine Survival Project examined the diet of young out-migrating Chinook Salmon for four consecutive years in the Cowichan River estuary and in Cowichan Bay, British Columbia, Canada. Local <span class="hlt">zooplankton</span> communities were monitored during the final year of the study in the Cowichan River estuary, Cowichan Bay, and eastward to the Salish Sea to better understand the bottom-up processes that may be affecting Chinook Salmon survival. Rearing environment affected body size, diet, and distribution in the study area. Clipped smolts (hatchery-reared) were larger than the unclipped smolts (primarily naturally-reared), ate larger prey, spent very little time in the estuary, and disappeared from the bay earlier, likely due to emigration or mortality. Their larger body size may be a disadvantage for hatchery smolts if it necessitates their leaving the estuary prematurely to meet energy needs; the onset of piscivory began at a forklength of approximately 74 mm, which was less than the average forklength of the clipped fish in this study. The primary <span class="hlt">zooplankton</span> bloom occurred during the last week of April/first week of May 2013, whereas the main release of hatchery-reared Chinook Salmon smolts occurs each year in mid-May-this timing mismatch may reduce their survival. Gut fullness was correlated with <span class="hlt">zooplankton</span> biomass; however, both the clipped and unclipped smolts were not observed in the bay until the bloom of harmful Noctiluca was finished-20 days after the maximum recorded <span class="hlt">zooplankton</span> abundance. Jellyfish medusa flourished in nearshore areas, becoming less prevalent towards the deeper waters of the Salish Sea. The sizable presence of Noctiluca and jellyfish in the <span class="hlt">zooplankton</span> blooms may be repelling</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24197798','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24197798"><span>Effects of a new molt-inducing insecticide, tebufenozide, on <span class="hlt">zooplankton</span> communities in lake enclosures.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kreutzweiser, D P; Thomas, D R</p> <p>1995-10-01</p> <p>: A potent ecdysone agonist, tebufenozide, has recently been developed as a molt-inducing insecticide to control defoliating lepidopterans. As part of continuing research efforts to assess the effectiveness and environmental safety of this material for insect pest management in Canadian forests, tebufenozide (RH-5992-2F) was applied to large lake enclosures and the effects on <span class="hlt">zooplankton</span> communities were evaluated. There were significant treatment effects at all test concentrations (0.07-0.66 mg L(-1) tebufenozide). Concentration-dependent reductions in the abundance of cladocerans indicated that there were direct toxic effects of tebufenozide on this group of macrozooplankton. There were no indications of direct toxic effects on copepods. Significant increases in abundance of rotifers in treated enclosures at the three higher test concentrations were coincident with reductions in cladocerans and indicated secondary effects of the insecticide on the abundance of microzooplankton. There were no significant differences among treated and control enclosures in chlorophyll a concentrations, indicating that tebufenozide did not have direct effects on phytoplankton biomass, nor did the alterations in the <span class="hlt">zooplankton</span> communities of treated enclosures have measurable secondary effects on phytoplankton biomass. Daytime dissolved oxygen concentrations were significantly higher in treated enclosures than in controls, indicating that the perturbation to biotic communities of some treated enclosures was sufficient to induce measurable changes in system-level functional attributes. Recovery of <span class="hlt">zooplankton</span> communities in the enclosures occurred within 1-2 months at 0.07 and 0.13 mg l(-1) and by the following summer (12-13 months) at 0.33 and 0.66 mg l(-1).</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016CorRe..35..495L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016CorRe..35..495L"><span>Can heterotrophic uptake of dissolved organic carbon and <span class="hlt">zooplankton</span> mitigate carbon budget deficits in annually bleached corals?</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Levas, Stephen; Grottoli, Andréa G.; Schoepf, Verena; Aschaffenburg, Matthew; Baumann, Justin; Bauer, James E.; Warner, Mark E.</p> <p>2016-06-01</p> <p>Annual coral bleaching events due to increasing sea surface temperatures are predicted to occur globally by the mid-century and as early as 2025 in the Caribbean, and severely impact coral reefs. We hypothesize that heterotrophic carbon (C) in the form of <span class="hlt">zooplankton</span> and dissolved organic carbon (DOC) is a significant source of C to bleached corals. Thus, the ability to utilize multiple pools of fixed carbon and/or increase the amount of fixed carbon acquired from one or more pools of fixed carbon (defined here as heterotrophic plasticity) could underlie coral acclimatization and persistence under future ocean-warming scenarios. Here, three species of Caribbean coral— Porites divaricata, P. astreoides, and Orbicella faveolata—were experimentally bleached for 2.5 weeks in two successive years and allowed to recover in the field. <span class="hlt">Zooplankton</span> feeding was assessed after single and repeat bleaching, while DOC fluxes and the contribution of DOC to the total C budget were determined after single bleaching, 11 months on the reef, and repeat bleaching. <span class="hlt">Zooplankton</span> was a large C source for P. astreoides, but only following single bleaching. DOC was a source of C for single-bleached corals and accounted for 11-36 % of daily metabolic demand (CHARDOC), but represented a net loss of C in repeat-bleached corals. In repeat-bleached corals, DOC loss exacerbated the negative C budgets in all three species. Thus, the capacity for heterotrophic plasticity in corals is compromised under annual bleaching, and heterotrophic uptake of DOC and <span class="hlt">zooplankton</span> does not mitigate C budget deficits in annually bleached corals. Overall, these findings suggest that some Caribbean corals may be more susceptible to repeat bleaching than to single bleaching due to a lack of heterotrophic plasticity, and coral persistence under increasing bleaching frequency may ultimately depend on other factors such as energy reserves and symbiont shuffling.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035978','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035978"><span>Strong evidence for terrestrial support of <span class="hlt">zooplankton</span> in small lakes based on stable isotopes of carbon, nitrogen, and hydrogen</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Cole, J.J.; Carpenter, S.R.; Kitchell, J.; Pace, M.L.; Solomon, C.T.; Weidel, B.</p> <p>2011-01-01</p> <p>Cross-ecosystem subsidies to food webs can alter metabolic balances in the receiving (subsidized) system and free the food web, or particular consumers, from the energetic constraints of local primary production. Although cross-ecosystem subsidies between terrestrial and aquatic systems have been well recognized for benthic organisms in streams, rivers, and the littoral zones of lakes, terrestrial subsidies to pelagic consumers are more difficult to demonstrate and remain controversial. Here, we adopt a unique approach by using stable isotopes of H, C, and N to estimate terrestrial support to <span class="hlt">zooplankton</span> in two contrasting lakes. <span class="hlt">Zooplankton</span> (Holopedium, Daphnia, and Leptodiaptomus) are comprised of ???20-40% of organic material of terrestrial origin. These estimates are as high as, or higher than, prior measures obtained by experimentally manipulating the inorganic 13C content of these lakes to augment the small, natural contrast in 13C between terrestrial and algal photosynthesis. Our study gives credence to a growing literature, which we review here, suggesting that significant terrestrial support of pelagic crustaceans (<span class="hlt">zooplankton</span>) is widespread.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3033307','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3033307"><span>Strong evidence for terrestrial support of <span class="hlt">zooplankton</span> in small lakes based on stable isotopes of carbon, nitrogen, and hydrogen</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Cole, Jonathan J.; Carpenter, Stephen R.; Kitchell, Jim; Pace, Michael L.; Solomon, Christopher T.; Weidel, Brian</p> <p>2011-01-01</p> <p>Cross-ecosystem subsidies to food webs can alter metabolic balances in the receiving (subsidized) system and free the food web, or particular consumers, from the energetic constraints of local primary production. Although cross-ecosystem subsidies between terrestrial and aquatic systems have been well recognized for benthic organisms in streams, rivers, and the littoral zones of lakes, terrestrial subsidies to pelagic consumers are more difficult to demonstrate and remain controversial. Here, we adopt a unique approach by using stable isotopes of H, C, and N to estimate terrestrial support to <span class="hlt">zooplankton</span> in two contrasting lakes. <span class="hlt">Zooplankton</span> (Holopedium, Daphnia, and Leptodiaptomus) are comprised of ≈20–40% of organic material of terrestrial origin. These estimates are as high as, or higher than, prior measures obtained by experimentally manipulating the inorganic 13C content of these lakes to augment the small, natural contrast in 13C between terrestrial and algal photosynthesis. Our study gives credence to a growing literature, which we review here, suggesting that significant terrestrial support of pelagic crustaceans (<span class="hlt">zooplankton</span>) is widespread. PMID:21245299</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26905979','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26905979"><span>Microplastics Alter the Properties and Sinking Rates of <span class="hlt">Zooplankton</span> Faecal Pellets.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cole, Matthew; Lindeque, Penelope K; Fileman, Elaine; Clark, James; Lewis, Ceri; Halsband, Claudia; Galloway, Tamara S</p> <p>2016-03-15</p> <p>Plastic debris is a widespread contaminant, prevalent in aquatic ecosystems across the globe. <span class="hlt">Zooplankton</span> readily ingest microscopic plastic (microplastic, < 1 mm), which are later egested within their faecal pellets. These pellets are a source of food for marine organisms, and contribute to the oceanic vertical flux of particulate organic matter as part of the biological pump. The effects of microplastics on faecal pellet properties are currently unknown. Here we test the hypotheses that (1) faecal pellets are a vector for transport of microplastics, (2) polystyrene microplastics can alter the properties and sinking rates of <span class="hlt">zooplankton</span> egests and, (3) faecal pellets can facilitate the transfer of plastics to coprophagous biota. Following exposure to 20.6 μm polystyrene microplastics (1000 microplastics mL(-1)) and natural prey (∼1650 algae mL(-1)) the copepod Calanus helgolandicus egested faecal pellets with significantly (P < 0.001) reduced densities, a 2.25-fold reduction in sinking rates, and a higher propensity for fragmentation. We further show that microplastics, encapsulated within egests of the copepod Centropages typicus, could be transferred to C. helgolandicus via coprophagy. Our results support the proposal that sinking faecal matter represents a mechanism by which floating plastics can be vertically transported away from surface waters.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1999DSRII..46.2081M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1999DSRII..46.2081M"><span>Diel variations of the bathymetric distribution of <span class="hlt">zooplankton</span> groups and biomass in Cap-Ferret Canyon, France</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Maycas, Encarna Ribera; Bourdillon, André; Macquart-Moulin, Claude; Passelaigue, Françoise; Patriti, Gilbert</p> <p>1999-10-01</p> <p>The bathymetric distribution, abundance and diel vertical migrations (DVM) of <span class="hlt">zooplankton</span> were investigated along the axis of the Cap-Ferret Canyon (Bay of Biscay, French Atlantic coast) by a consecutive series of synchronous net hauls that sampled the whole water column (0-2000 m in depth) during a diel cycle. The distribution of appendicularians (maximum 189 individuals m -3), cladocerans (maximum 287 individuals m -3), copepods (copepods<4 mm, maximum 773 individuals m -3, copepods>4 mm, maximum 13 individuals m -3), ostracods (maximum 8 individuals m -3), siphonophores (maximum >2 individuals m -3) and peracarids (maximum >600 individuals 1000 m -3) were analysed and represented by isoline diagrams. The biomass of total <span class="hlt">zooplankton</span> (maximum 18419 μg C m -3, 3780 μg N m -3) and large copepods (>4 mm maximum 2256 μg C m -3, 425 μg N m -3) also were determined. Vertical migration was absent or affected only the epipelagic zone for appendicularians, cladocerans, small copepods and siphonophores. Average amplitude of vertical migration was about 400-500 m for ostracods, some hyperiids and mysids, and large copepods, which were often present in the epipelagic, mesopelagic, and bathypelagic zones. Large copepods can constitute more than 80% of the biomass corresponding to total <span class="hlt">zooplankton</span>. They may play an important role in the active vertical transfer of carbon and nitrogen.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFMOS23A1983H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFMOS23A1983H"><span><span class="hlt">Zooplankton</span> Responses to Low-Oxygen Condition upon a Shallow Oxygen Minimum Zone in the Upwelling Region off Chile</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hidalgo, P.; Escribano, R.</p> <p>2015-12-01</p> <p>A shallow oxygen minimum zone (OMZ) is a critical component in the coastal upwelling ecosystem off Chile. This OMZ causes oxygen-deficient water entering the photic layer and affecting plankton communities having low tolerance to hypoxia. Variable, and usually species-dependent, responses of <span class="hlt">zooplankton</span> to hypoxia condition can be found. Most dominant species avoid hypoxia by restricting their vertical distribution, while others can temporarily enter and even spent part of their life cycle within the OMZ. Whatever the case, low-oxygen conditions appear to affect virtually all vital rates of <span class="hlt">zooplankton</span>, such as mortality, fecundity, development and growth and metabolism, and early developmental stages seem more sensitive, with significant consequences for population and community dynamics. For most study cases, these effects are negative at individual and population levels. Observations and predictions upon increasing upwelling intensity over the last 20-30 years indicate a gradual shoaling of the OMZ, and so that an expected enhancement of these negative effects of hypoxia on the <span class="hlt">zooplankton</span> community. Unknown processes of adaptation and community-structure adjustments are expected to take place with uncertain consequences for the food web of this highly productive eastern boundary current ecosystem.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010DSRII..57.2157W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010DSRII..57.2157W"><span>Deep-sea sampling on CMarZ cruises in the Atlantic Ocean - an Introduction</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wiebe, Peter H.; Bucklin, Ann; Madin, Laurence; Angel, Martin V.; Sutton, Tracey; Pagés, Francesc; Hopcroft, Russell R.; Lindsay, Dhugal</p> <p>2010-12-01</p> <p>The deep-sea <span class="hlt">zooplankton</span> assemblage is hypothesized to have high species <span class="hlt">diversity</span>, with low abundances of each species. However, even rare species may have huge population sizes and play a critical role in the dynamics of deep-sea environments. The Census of Marine <span class="hlt">Zooplankton</span> (CMarZ) study sought to accurately assess <span class="hlt">zooplankton</span> <span class="hlt">diversity</span> in the mesopelagic and bathypelagic zones of the subtropical/tropical of the northwest and eastern sections of the Atlantic Ocean using integrated morphological and molecular <span class="hlt">analysis</span> of large-volume samples to depths of 5,000 m. The field surveys in April 2006 and November 2007 included scientists and students associated with the CMarZ. The cruise field work entailed at-sea <span class="hlt">analysis</span> of samples and identification of specimens by expert taxonomists, with at-sea DNA sequencing to determine a barcode (i.e., a short DNA sequence for species recognition) for selected species. Environmental data and <span class="hlt">zooplankton</span> samples were collected with 1-m 2 and 10-m 2 opening/closing MOCNESS (0-1000 m and 1000-5000 m, respectively), and with either a 0.25-m 2 MOCNESS or a 0.5-m 2 Multi-net above 1000 m. More than 500 species were identified and more than 1000 specimens placed in a queue for barcoding on each cruise; several hundred species were barcoded at sea. For several taxonomic groups, a significant fraction of the region's known species were collected and identified. For example, in the northwest Atlantic 93 of 140 known ostracod species for the Atlantic Ocean were collected, 6 undescribed species were found, and the first DNA barcode for a planktonic ostracod was obtained. The deployment of trawls with fine-mesh nets to sample large volumes at great depths for small <span class="hlt">zooplankton</span> confirmed that there is considerable species <span class="hlt">diversity</span> at depth, with more species yet to be discovered.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28849296','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28849296"><span>River discharge as a major driving force on spatial and temporal variations in <span class="hlt">zooplankton</span> biomass and community structure in the Godavari estuary India.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Venkataramana, V; Sarma, V V S S; Matta Reddy, Alavala</p> <p>2017-08-28</p> <p>Variability in horizontal <span class="hlt">zooplankton</span> biomass distribution was investigated over 13 months in the Godavari estuary, along with physical (river discharge, temperature, salinity), chemical (nutrients, particulate organic matter), biological (phytoplankton biomass), and geological (suspended matter) properties to examine the influencing factors on their spatial and temporal variabilities. The entire estuary was filled with freshwater during peak discharge period and salinity near zero, increased to ~ 34 psu during dry period with relatively high nutrient levels during former than the latter period. Due to low flushing time (< 1 day) and high suspended load (> 500 mg L -1 ) during peak discharge period, picoplankton (cyanophyceae) contributed significantly to the phytoplankton biomass (Chl-a) whereas microplankton and nanoplankton (bacillariophyceae, and chlorophyceae) during moderate and mostly microplankton during dry period. <span class="hlt">Zooplankton</span> biomass was the lowest during peak discharge period and increased during moderate followed by dry period. The <span class="hlt">zooplankton</span> abundance was controlled by dead organic matter during peak discharge period, while both phytoplankton biomass and dead organic matter during moderate discharge and mostly phytoplankton biomass during dry period. This study suggests that significant modification of physico-chemical properties by river discharge led to changes in phytoplankton composition and dead organic matter concentrations that alters biomass, abundance, and composition of <span class="hlt">zooplankton</span> in the Godavari estuary.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29126632','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29126632"><span>An estimate of the percentage of non-predatory dead variability in coastal <span class="hlt">zooplankton</span> of the southern Humboldt Current System.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Krautz, M C; Hernández-Miranda, E; Veas, R; Bocaz, P; Riquelme, P; Quiñones, R A</p> <p>2017-12-01</p> <p>Non-predatory dead variability in <span class="hlt">zooplankton</span> remains poorly quantified worldwide. Here, we make the first estimation of the percentage of dead organisms in coastal <span class="hlt">zooplankton</span> communities in the Humboldt Current System (HCS) under in situ conditions. The study was conducted in four coastal sites of the southern HCS (between 36 and 37°S) over a period of one year. Percentages of dead organisms were based on the classification as live or dead of 158,220 holoplankton and 17,591 meroplankton individuals using neutral red staining technique. The percentage of dead organisms in total-<span class="hlt">zooplankton</span> was between 4.3% in Coronel Bay (summer) and 76.9% in Llico (autumn). The percentage of dead total-holoplankton varied from 4.2% (Itata River Mouth; autumn) to 77.6% (Llico; autumn), while the percentage of dead total-meroplankton ranged from 1.5% to 56.8% in Coronel Bay and Coliumo Bay, respectively. The most abundant taxa analyzed were the copepods Acartia sp., Paracalanus sp., Calanoides sp., Cladocera, Polychaeta, and the eggs of anchoveta Engraulis ringens. Among these taxa, there was a high degree of interspecific variability in the estimation of the dead organisms. The Pearson correlation shows significant relationships between maximum temperature, and minimum salinity, with the percentage of dead individuals of Acartia sp. and Paracalanus sp. Environmental factors explaining those relationships were: the El Niño 2015-2016 event, and freshwater river runoff. The use of vital staining to estimate non-predatory death for total-<span class="hlt">zooplankton</span> and selected sentinel species is a promising tool to establish baselines to evaluate natural perturbations (e.g. ENSO), and anthropogenic alterations in coastal pelagic ecosystems. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3213101','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3213101"><span>Long Distance Dispersal of <span class="hlt">Zooplankton</span> Endemic to Isolated Mountaintops - an Example of an Ecological Process Operating on an Evolutionary Time Scale</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Vanschoenwinkel, Bram; Mergeay, Joachim; Pinceel, Tom; Waterkeyn, Aline; Vandewaerde, Hanne; Seaman, Maitland; Brendonck, Luc</p> <p>2011-01-01</p> <p>Recent findings suggest a convergence of time scales between ecological and evolutionary processes which is usually explained in terms of rapid micro evolution resulting in evolution on ecological time scales. A similar convergence, however, can also emerge when slow ecological processes take place on evolutionary time scales. A good example of such a slow ecological process is the colonization of remote aquatic habitats by passively dispersed <span class="hlt">zooplankton</span>. Using variation at the protein coding mitochondrial COI gene, we investigated the balance between mutation and migration as drivers of genetic <span class="hlt">diversity</span> in two Branchipodopsis fairy shrimp species (Crustacea, Anostraca) endemic to remote temporary rock pool clusters at the summit of isolated mountaintops in central South Africa. We showed that both species colonized the region almost simultaneously c. 0.8 My ago, but exhibit contrasting patterns of regional genetic <span class="hlt">diversity</span> and demographic history. The haplotype network of the common B. cf. wolfi showed clear evidence of 11 long distance dispersal events (up to 140 km) with five haplotypes that are shared among distant inselbergs, as well as some more spatially isolated derivates. Similar patterns were not observed for B. drakensbergensis presumably since this rarer species experienced a genetic bottleneck. We conclude that the observed genetic patterns reflect rare historic colonization events rather than frequent ongoing gene flow. Moreover, the high regional haplotype <span class="hlt">diversity</span> combined with a high degree of haplotype endemicity indicates that evolutionary- (mutation) and ecological (migration) processes in this system operate on similar time scales. PMID:22102865</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1008603','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1008603"><span>Temperature effects on stocks and stability of a phytoplankton-<span class="hlt">zooplankton</span> model and the dependence on light and nutrients</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Norberg, J.; DeAngelis, D.L.</p> <p>1997-01-01</p> <p>A model of a closed phytoplankton—<span class="hlt">zooplankton</span> ecosystem was analyzed for effects of temperature on stocks and stability and the dependence of these effects on light and total nutrient concentration of the system. An <span class="hlt">analysis</span> of the steady state equations showed that the effect of temperature on <span class="hlt">zooplankton</span> and POM biomass was levelled when primary production is nutrient limited. Temperature increase had a generally negative effect on all biomasses at high nutrient levels due to increased maintenance costs. Nutrient limitation of net primary production is the main factor governing the effect of stocks and flows as well as the stability of the system. All components of the system, except for phytoplankton biomass, are proportional to net production and thus to the net effect of light on photosynthesis. However, temperature determines the slope of that relationship. The resilience of the system was measured by calculating the eigenvalues of the steady state. Under oligotrophic conditions, the system can be stable, but an increase in temperature can cause instability or a decrease in resilience. This conclusion is discussed in the face of recent models that take spatial heterogeneity into account and display far more stable behavior, in better agreement to empirical data. Using simulations, we found that the amplitude of fluctuations of the herbivore stock increases with temperature while the mean biomass and minimum values decrease in comparison with steady state predictions</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2006DSRI...53.1203H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2006DSRI...53.1203H"><span>The seasonal succession of <span class="hlt">zooplankton</span> in the Southern Ocean south of Australia, part II: The Sub-Antarctic to Polar Frontal Zones</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hunt, Brian P. V.; Hosie, Graham W.</p> <p>2006-07-01</p> <p>Between October 2001 and March 2002 six transects were completed at monthly intervals in the Sub-Antarctic Zone (SAZ) and Inter-Sub-Antarctic Front Zone (ISAFZ)/Polar Frontal Zone (PFZ) in the Southern Ocean south of Australia. <span class="hlt">Zooplankton</span> were collected with a Continuous Plankton Recorder and NORPAC net and multivariate <span class="hlt">analysis</span> was used to analyse the seasonal succession of communities. Despite strong, seasonally consistent, biogeographic differences between the SAZ and ISAFZ/PFZ, community structure in all zones was dominated by a suite of common taxa. These included the ubiquitous Oithona similis, foraminiferans and appendicularians (Core taxa), occurring in >97% of samples and contributing an average of 75% to total sample abundance, and Calanus simillimus, Rhincalanus gigas, Ctenocalanus citer, Clausocalanus brevipes, Clausocalanus laticeps, Oithona frigida, Limacina spp. and chaetognaths (Summer taxa), present in >57% of samples and occurring at seasonally high densities. Because of the dominance of the Core and Summer taxa, the seasonal succession was most clearly evident as a change in <span class="hlt">zooplankton</span> densities. In October densities averaged <15 ind m -3, rising to 52 ind m -3 (max=92 ind m -3) in November, and subsequently increasing slowly through to January (ave=115 ind m -3; max=255 ind m -3). Densities peaked abruptly in February (ave=634 ind m -3; max=1593 ind m -3), and remained relatively high in March (ave=193 ind m -3; max=789 ind m -3). A latitudinal lag in seasonal development was observed with peak densities occurring first in the SAZ (February) and then in the ISAFZ/PFZ (March). The seasonal community succession was strongly influenced by species population cycles. The role of <span class="hlt">zooplankton</span> in biogeochemical cycling in the SAZ and ISAFZ/PFZ was discussed in the light of past sediment trap data collected from the study area.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=331157&keyword=HUMAN+AND+RESOURCE&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=331157&keyword=HUMAN+AND+RESOURCE&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Development of a Multimetric Indicator of Pelagic <span class="hlt">Zooplankton</span> Assemblage Condition for the 2012 National Lakes Assessment</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>We used <span class="hlt">zooplankton</span> data collected for the 2012 National Lakes Assessment (NLA) to develop multimetric indices (MMIs) for five aggregated ecoregions of the conterminous USA (Coastal Plains, Eastern Highlands, Plains, Upper Midwest, and Western Mountains and Xeric [“West&rsq...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28850765','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28850765"><span>Ocean acidification alters <span class="hlt">zooplankton</span> communities and increases top-down pressure of a cubozoan predator.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hammill, Edd; Johnson, Ellery; Atwood, Trisha B; Harianto, Januar; Hinchliffe, Charles; Calosi, Piero; Byrne, Maria</p> <p>2018-01-01</p> <p>The composition of local ecological communities is determined by the members of the regional community that are able to survive the abiotic and biotic conditions of a local ecosystem. Anthropogenic activities since the industrial revolution have increased atmospheric CO 2 concentrations, which have in turn decreased ocean pH and altered carbonate ion concentrations: so called ocean acidification (OA). Single-species experiments have shown how OA can dramatically affect <span class="hlt">zooplankton</span> development, physiology and skeletal mineralization status, potentially reducing their defensive function and altering their predatory and antipredatory behaviors. This means that increased OA may indirectly alter the biotic conditions by modifying trophic interactions. We investigated how OA affects the impact of a cubozoan predator on their <span class="hlt">zooplankton</span> prey, predominantly Copepoda, Pleocyemata, Dendrobranchiata, and Amphipoda. Experimental conditions were set at either current (pCO 2 370 μatm) or end-of-the-century OA (pCO 2 1,100 μatm) scenarios, crossed in an orthogonal experimental design with the presence/absence of the cubozoan predator Carybdea rastoni. The combined effects of exposure to OA and predation by C. rastoni caused greater shifts in community structure, and greater reductions in the abundance of key taxa than would be predicted from combining the effect of each stressor in isolation. Specifically, we show that in the combined presence of OA and a cubozoan predator, populations of the most abundant member of the <span class="hlt">zooplankton</span> community (calanoid copepods) were reduced 27% more than it would be predicted based on the effects of these stressors in isolation, suggesting that OA increases the susceptibility of plankton to predation. Our results indicate that the ecological consequences of OA may be greater than predicted from single-species experiments, and highlight the need to understand future marine global change from a community perspective. © 2017 John Wiley & Sons</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016JMS...162...18R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016JMS...162...18R"><span>High frequency mesozooplankton monitoring: Can imaging systems and automated sample <span class="hlt">analysis</span> help us describe and interpret changes in <span class="hlt">zooplankton</span> community composition and size structure — An example from a coastal site</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Romagnan, Jean Baptiste; Aldamman, Lama; Gasparini, Stéphane; Nival, Paul; Aubert, Anaïs; Jamet, Jean Louis; Stemmann, Lars</p> <p>2016-10-01</p> <p>The present work aims to show that high throughput imaging systems can be useful to estimate mesozooplankton community size and taxonomic descriptors that can be the base for consistent large scale monitoring of plankton communities. Such monitoring is required by the European Marine Strategy Framework Directive (MSFD) in order to ensure the Good Environmental Status (GES) of European coastal and offshore marine ecosystems. Time and cost-effective, automatic, techniques are of high interest in this context. An imaging-based protocol has been applied to a high frequency time series (every second day between April 2003 to April 2004 on average) of <span class="hlt">zooplankton</span> obtained in a coastal site of the NW Mediterranean Sea, Villefranche Bay. One hundred eighty four mesozooplankton net collected samples were analysed with a Zooscan and an associated semi-automatic classification technique. The constitution of a learning set designed to maximize copepod identification with more than 10,000 objects enabled the automatic sorting of copepods with an accuracy of 91% (true positives) and a contamination of 14% (false positives). Twenty seven samples were then chosen from the total copepod time series for detailed visual sorting of copepods after automatic identification. This method enabled the description of the dynamics of two well-known copepod species, Centropages typicus and Temora stylifera, and 7 other taxonomically broader copepod groups, in terms of size, biovolume and abundance-size distributions (size spectra). Also, total copepod size spectra underwent significant changes during the sampling period. These changes could be partially related to changes in the copepod assemblage taxonomic composition and size distributions. This study shows that the use of high throughput imaging systems is of great interest to extract relevant coarse (i.e. total abundance, size structure) and detailed (i.e. selected species dynamics) descriptors of <span class="hlt">zooplankton</span> dynamics. Innovative</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_16 --> <div id="page_17" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="321"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28472138','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28472138"><span>Ecological value of macrophyte cover in creating habitat for microalgae (diatoms) and <span class="hlt">zooplankton</span> (rotifers and crustaceans) in small field and forest water bodies.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Celewicz-Gołdyn, Sofia; Kuczyńska-Kippen, Natalia</p> <p>2017-01-01</p> <p>Due to their small area and shallow depth ponds are usually treated as a single sampling unit, while various microhabitats offer different environmental conditions. Thus, we tested the effect of different habitat types typically found within small ponds on the microalgae and <span class="hlt">zooplankton</span> communities. We found that submerged macrophytes have the strongest impact on microalgae and <span class="hlt">zooplankton</span> communities out of all the analysed habitats. Some epontic diatoms (e.g. Fragilaria dilatata, Cymbella affinis) and littoral-associated <span class="hlt">zooplankton</span> species (e.g. Simocephalus vetulus, Lecane bulla) were significantly related to elodeids. However, pelagic species (e.g. bosminids) preferred less complex helophytes, which suggests that the most heterogeneous elodeid habitats were not an anti-predator shelter for cladocerans. Selection of different macrophyte types by taxonomically various organisms suggests that it is not only macrophyte cover that is desired for healthy aquatic environment but that a level of habitat mosaic is required to ensure the well-being of aquatic food webs. Species-specific preferences for different types of macrophytes indicate the high ecological value of macrophyte cover in ponds and a potential direction for the management of small water bodies towards maintaining a great variation of aquatic plants. Moreover, the type of surrounding landscape, reflecting human-induced disturbance (28 field ponds) and natural catchment (26 forest ponds), significantly influenced only <span class="hlt">zooplankton</span>, while diatoms were affected indirectly through the level of conductivity. Nutrient overload (higher content of TRP) and increased conductivity in the field landscape contributed to a rise in microalgae (e.g. Amphora pediculus, Gomphonema parvulum) and <span class="hlt">zooplankton</span> (e.g. Thermocyclops oithonoides, Eubosmina coregoni) abundance. An awareness of the responses of both components of plankton communities to environmental factors is necessary for maintaining the good state of small</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015BGeo...12.1955M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015BGeo...12.1955M"><span>The contribution of <span class="hlt">zooplankton</span> faecal pellets to deep-carbon transport in the Scotia Sea (Southern Ocean)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Manno, C.; Stowasser, G.; Enderlein, P.; Fielding, S.; Tarling, G. A.</p> <p>2015-03-01</p> <p>The northern Scotia Sea contains the largest seasonal uptake of atmospheric carbon dioxide yet measured in the Southern Ocean. This study examines one of the main routes by which this carbon fluxes to the deep ocean: through the production of faecal pellets (FPs) by the <span class="hlt">zooplankton</span> community. Deep sediment traps were deployed at two sites with contrasting ocean productivity regimes (P3, naturally iron-fertilized, and P2, iron-limited) within the same water mass. The magnitude and seasonal pattern of particulate organic carbon (POC) and FPs in the traps was markedly different between the two sites. Maximum fluxes at P3 (22.91 mg C m-2 d-1; 2534 FP m-2 d1) were 1 order of magnitude higher than at P2 (4.01 mg C m-2 d-1; 915 FP m-2 d1, with flux at P3 exhibiting a double seasonal peak, compared to a single flatter peak at P2. The maximum contribution of FP carbon to the total amount of POC was twice as high at P3 (91%) compared to P2 (40%). The dominant FP category at P3 varied between round, ovoidal, cylindrical and tabular over the course of the year, while, at P2, ovoidal FPs were consistently dominant, always making up more than 60% of the FP assemblage. There was also a difference in the FP state between the two sites, with FPs being relatively intact at P3, while FPs were often fragmented with broken peritrophic membranes at P2. The exception was ovoidal FPs, which were relatively intact at both sites. Our observations suggest that there was a community shift from a herbivorous to an omnivorous diet from spring through to autumn at P3, while detritivores had a higher relative importance over the year at P2. Furthermore, the flux was mainly a product of the vertically migrating <span class="hlt">zooplankton</span> community at P3, while the FP flux was more likely to be generated by deeper-dwelling <span class="hlt">zooplankton</span> feeding on recycled material at P2. The results demonstrate that the feeding behaviour and vertical distribution of the <span class="hlt">zooplankton</span> community plays a critical role in controlling</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME51B..07H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME51B..07H"><span>a Comparison of Morphological Taxonomy and Next Generation DNA Sequencing for the Assessment of <span class="hlt">Zooplankton</span> <span class="hlt">Diversity</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Harvey, J.; Fisher, J. L.; Johnson, S.; Morgan, S.; Peterson, W. T.; Satterthwaite, E. V.; Vrijenhoek, R. C.</p> <p>2016-02-01</p> <p>Our ability to accurately characterize the <span class="hlt">diversity</span> of planktonic organisms is affected by both the methods we use to collect water samples and our approaches to assessing sample contents. Plankton nets collect organisms from high volumes of water, but integrate sample contents along the net's path. In contrast, plankton pumps collect water from discrete depths. Autonomous underwater vehicles (AUVs) can collect water samples with pinpoint accuracy from physical features such as upwelling fronts or biological features such as phytoplankton blooms, but sample volumes are necessarily much smaller than those possible with nets. Characterization of plankton <span class="hlt">diversity</span> and abundances in water samples may also vary with the assessment method we apply. Morphological taxonomy provides visual identification and enumeration of organisms via microscopy, but is labor intensive. Next generation DNA sequencing (NGS) shows great promise for assessing plankton <span class="hlt">diversity</span> in water samples but accurate assessment of relative abundances may not be possible in all cases. Comparison of morphological taxonomy to molecular approaches is necessary to identify areas of overlap and also areas of disagreement between these methods. We have compared morphological taxonomic assessments to mitochondrial COI and nuclear 28S ribosomal RNA NGS results for plankton net samples collected in Monterey bay, California. We have made a similar comparison for plankton pump samples, and have also applied our NGS methods to targeted, small volume water samples collected by an AUV. Our goal is to communicate current results and lessons learned regarding application of traditional taxonomy and novel molecular approaches to the study of plankton <span class="hlt">diversity</span> in spatially and temporally variable, coastal marine environments.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23313091','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23313091"><span><span class="hlt">Analysis</span> of artifacts suggests DGGE should not be used for quantitative <span class="hlt">diversity</span> <span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Neilson, Julia W; Jordan, Fiona L; Maier, Raina M</p> <p>2013-03-01</p> <p>PCR-denaturing gradient gel electrophoresis (PCR-DGGE) is widely used in microbial ecology for the <span class="hlt">analysis</span> of comparative community structure. However, artifacts generated during PCR-DGGE of mixed template communities impede the application of this technique to quantitative <span class="hlt">analysis</span> of community <span class="hlt">diversity</span>. The objective of the current study was to employ an artificial bacterial community to document and analyze artifacts associated with multiband signatures and preferential template amplification and to highlight their impacts on the use of this technique for quantitative <span class="hlt">diversity</span> <span class="hlt">analysis</span>. Six bacterial species (three Betaproteobacteria, two Alphaproteobacteria, and one Firmicutes) were amplified individually and in combinations with primers targeting the V7/V8 region of the 16S rRNA gene. Two of the six isolates produced multiband profiles demonstrating that band number does not correlate directly with α-<span class="hlt">diversity</span>. <span class="hlt">Analysis</span> of the multiple bands from one of these isolates confirmed that both bands had identical sequences which lead to the hypothesis that the multiband pattern resulted from two distinct structural conformations of the same amplicon. In addition, consistent preferential amplification was demonstrated following pairwise amplifications of the six isolates. DGGE and real time PCR <span class="hlt">analysis</span> identified primer mismatch and PCR inhibition due to 16S rDNA secondary structure as the most probable causes of preferential amplification patterns. Reproducible DGGE community profiles generated in this study confirm that PCR-DGGE provides an excellent high-throughput tool for comparative community structure <span class="hlt">analysis</span>, but that method-specific artifacts preclude its use for accurate comparative <span class="hlt">diversity</span> <span class="hlt">analysis</span>. Copyright © 2013 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26600511','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26600511"><span>Genetic <span class="hlt">diversity</span> and relationship <span class="hlt">analysis</span> of Gossypium arboreum accessions.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Liu, F; Zhou, Z L; Wang, C Y; Wang, Y H; Cai, X Y; Wang, X X; Zhang, Z S; Wang, K B</p> <p>2015-11-19</p> <p>Simple sequence repeat techniques were used to identify the genetic <span class="hlt">diversity</span> of 101 Gossypium arboreum accessions collected from India, Vietnam, and the southwest of China (Guizhou, Guangxi, and Yunnan provinces). Twenty-six pairs of SSR primers produced a total of 103 polymorphic loci with an average of 3.96 polymorphic loci per primer. The average of the effective number of alleles, Nei's gene <span class="hlt">diversity</span>, and Shannon's information index were 0.59, 0.2835, and 0.4361, respectively. The <span class="hlt">diversity</span> varied among different geographic regions. The result of principal component <span class="hlt">analysis</span> was consistent with that of unweighted pair group method with arithmetic mean clustering <span class="hlt">analysis</span>. The 101 G. arboreum accessions were clustered into 2 groups.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015EGUGA..17.1764S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015EGUGA..17.1764S"><span>Influence of Acid Mine Drainage (AMD) on recent phyto- and <span class="hlt">zooplankton</span> in "the Anthropogenic Lake District" in south-west Poland</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sienkiewicz, Elwira; Gasiorowski, Michal</p> <p>2015-04-01</p> <p>In south-west Poland (central Europe) many the post-mining lakes formed so-called "the Anthropogenic Lake District". Areas, where water comes in contact with lignite beds characterized by high concentration of sulfide minerals are called Acid Mine Drainage (AMD). Pyrite oxidation and other sulfide compounds caused release sulfuric acids and heavy metal ions. These processes caused decline of water pH, sometimes to extremely low pH < 2.8. Presently, pit lakes located in south-west Poland have water pH ranged between 2.7 and 8.9. Differences of water reaction in the mine lakes depend on many factors, such as bedrock buffer capacity, geological structure of carboniferous area, exploitation technique of lignite, methods of filling and water supply of reservoirs and their age. During the evolution of lakes' ecosystems, sulfate-iron-calcium type of waters occurring in acid lakes will transform in alkaline hydrogen-carbonate-calcium type of waters. Due to the different time of the completion of lignite exploitation, lakes' age varied between forty and over one hundred years. Studies showed that younger lakes are more acidic in compare to older. To estimate impact of AMD we analyzed recent <span class="hlt">diversity</span> of diatoms and Cladocera remains and water chemistry from extremely acidic, relatively young lakes and from alkaline, older water bodies. As we expected, flora and fauna from acidic lakes have shown very low <span class="hlt">diversity</span> and species richness. Among diatoms, Eunotia exigua (Bréb. ex Kütz.) Rabenhorst and/or E. paludosa Grunow were dominated taxa, while fauna Cladocera did not occurred in lakes with water pH < 3. On this area, exploitation of lignite continued up to 1973. Older lakes were formed in the region where the mine started work in 1880 and lignite mining stopped in 1926. Measurements of pH value in situ point to neutral or alkaline water, but because of the possibility of hysteresis phenomenon, the studies of phyto- and <span class="hlt">zooplankton</span> have shown if there has already been a</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18214885','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18214885"><span>Determination of lead in samples of <span class="hlt">zooplankton</span>, water, and sediments in a Mexican reservoir: evidence for lead biomagnification in lower/intermediate trophic levels?</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Rubio-Franchini, Isidoro; Mejía Saavedra, Jesús; Rico-Martínez, Roberto</p> <p>2008-08-01</p> <p>We have determined lead concentration of water, sediment, and <span class="hlt">zooplankton</span> samples of El Niágara, a reservoir in Aguascalientes, Mexico. Our results include the first report of bioconcentration factor (BCF) obtained in an actual ecosystem (as opposed to the experimental setups in the laboratory) for a rotifer species; Asplanchna brigthwellii (BCF ca. 49 300). The BCF of this predatory <span class="hlt">zooplanktonic</span> species (A. brigthwellii) are up to four times greater than those of two grazing <span class="hlt">zooplanktonic</span> species (Daphnia similis and Moina micrura). In this contaminated reservoir that lacks fishes, Asplanchna, and Culex sp. together with ducks and other bigger invertebrates might represent the top predators. Our data suggest that biomagnification of lead through at least one trophic level can occur in freshwater systems. Biomagnification in A. brigthwellii might be explained in part by predation of this voracious predator on young of the herbivorous cladoceran, M. micrura. Our findings stand opposite to the current theoretical framework where lead biomagnification occurs only in lower trophic levels.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4810817','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4810817"><span>The impact of Cenozoic cooling on assemblage <span class="hlt">diversity</span> in planktonic foraminifera</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Pearson, Paul N.; Dunkley Jones, Tom; Farnsworth, Alexander; Lunt, Daniel J.; Markwick, Paul; Purvis, Andy</p> <p>2016-01-01</p> <p>The Cenozoic planktonic foraminifera (PF) (calcareous <span class="hlt">zooplankton</span>) have arguably the most detailed fossil record of any group. The quality of this record allows models of environmental controls on macroecology, developed for Recent assemblages, to be tested on intervals with profoundly different climatic conditions. These analyses shed light on the role of long-term global cooling in establishing the modern latitudinal <span class="hlt">diversity</span> gradient (LDG)—one of the most powerful generalizations in biogeography and macroecology. Here, we test the transferability of environment-<span class="hlt">diversity</span> models developed for modern PF assemblages to the Eocene epoch (approx. 56–34 Ma), a time of pronounced global warmth. Environmental variables from global climate models are combined with Recent environment–<span class="hlt">diversity</span> models to predict Eocene richness gradients, which are then compared with observed patterns. The results indicate the modern LDG—lower richness towards the poles—developed through the Eocene. Three possible causes are suggested for the mismatch between statistical model predictions and data in the Early Eocene: the environmental estimates are inaccurate, the statistical model misses a relevant variable, or the intercorrelations among facets of diversity—e.g. richness, evenness, functional diversity—have changed over geological time. By the Late Eocene, environment–<span class="hlt">diversity</span> relationships were much more similar to those found today. PMID:26977064</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4732815','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4732815"><span>Comparative <span class="hlt">Analysis</span> of Genome <span class="hlt">Diversity</span> in Bullmastiff Dogs</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Mortlock, Sally-Anne; Khatkar, Mehar S.; Williamson, Peter</p> <p>2016-01-01</p> <p>Management and preservation of genomic <span class="hlt">diversity</span> in dog breeds is a major objective for maintaining health. The present study was undertaken to characterise genomic <span class="hlt">diversity</span> in Bullmastiff dogs using both genealogical and molecular <span class="hlt">analysis</span>. Genealogical <span class="hlt">analysis</span> of <span class="hlt">diversity</span> was conducted using a database consisting of 16,378 Bullmastiff pedigrees from year 1980 to 2013. Additionally, a total of 188 Bullmastiff dogs were genotyped using the 170,000 SNP Illumina CanineHD Beadchip. Genealogical parameters revealed a mean inbreeding coefficient of 0.047; 142 total founders (f); an effective number of founders (fe) of 79; an effective number of ancestors (fa) of 62; and an effective population size of the reference population of 41. Genetic <span class="hlt">diversity</span> and the degree of genome-wide homogeneity within the breed were also investigated using molecular data. Multiple-locus heterozygosity (MLH) was equal to 0.206; runs of homozygosity (ROH) as proportion of the genome, averaged 16.44%; effective population size was 29.1, with an average inbreeding coefficient of 0.035, all estimated using SNP Data. Fine-scale population structure was analysed using NETVIEW, a population <span class="hlt">analysis</span> pipeline. Visualisation of the high definition network captured relationships among individuals within and between subpopulations. Effects of unequal founder use, and ancestral inbreeding and selection, were evident. While current levels of Bullmastiff heterozygosity, inbreeding and homozygosity are not unusual, a relatively small effective population size indicates that a breeding strategy to reduce the inbreeding rate may be beneficial. PMID:26824579</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28617290','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28617290"><span>Micro-<span class="hlt">zooplankton</span> grazing as a means of fecal bacteria removal in stormwater BMPs.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Burtchett, Jade M; Mallin, Michael A; Cahoon, Lawrence B</p> <p>2017-06-01</p> <p>A priority for environmental managers is control of stormwater runoff pollution, especially fecal microbial pollution. This research was designed to determine if fecal bacterial grazing by micro-<span class="hlt">zooplankton</span> is a significant control on fecal bacteria in aquatic best management practices (BMPs); if grazing differs between a wet detention pond and a constructed wetland; and if environmental factors enhance grazing. Both 3-day grazing tests and 24-h dilution assays were used to determine grazing differences between the two types of BMP. Micro-<span class="hlt">zooplankton</span> grazing was a stronger bacteria removal mechanism in stormwater wetlands rich in aquatic vegetation compared to a standard wet detention pond, although grazing was important in detention ponds as well. Our experiments indicated that the majority of grazers that fed on fecal bacteria were <20 μm in size. Grazing rates were positively correlated with fecal coliform abundance and increased water temperatures. Enumeration of grazers demonstrated that protozoans were significantly more abundant among wetland vegetation than in open water, and open wetland waters contained more flagellates and dinoflagellates than open wet detention pond waters. Grazing on fecal bacteria in BMPs is enhanced by aquatic vegetation, and grazing in aquatic BMPs in warmer climates should be greater than in cooler climates.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4408034','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4408034"><span>Phytoplankton Composition and Abundance in Restored Maltański Reservoir under the Influence of Physico-Chemical Variables and <span class="hlt">Zooplankton</span> Grazing Pressure</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Kozak, Anna; Gołdyn, Ryszard; Dondajewska, Renata</p> <p>2015-01-01</p> <p>In this paper we present the effects of environmental factors and <span class="hlt">zooplankton</span> food pressure on phytoplankton in the restored man-made Maltański Reservoir (MR). Two methods of restoration: biomanipulation and phosphorus inactivation have been applied in the reservoir. Nine taxonomical groups of phytoplankton represented in total by 183 taxa were stated there. The richest groups in respect of taxa number were green algae, cyanobacteria and diatoms. The diatoms, cryptophytes, chrysophytes, cyanobacteria, green algae and euglenophytes dominated in terms of abundance and/or biomass. There were significant changes among environmental parameters resulting from restoration measures which influenced the phytoplankton populations in the reservoir. These measures led to a decrease of phosphorus concentration due to its chemical inactivation and enhanced <span class="hlt">zooplankton</span> grazing as a result of planktivorous fish stocking. The aim of the study is to analyse the reaction of phytoplankton to the restoration measures and, most importantly, to determine the extent to which the qualitative and quantitative composition of phytoplankton depends on variables changing under the influence of restoration in comparison with other environmental variables. We stated that application of restoration methods did cause significant changes in phytoplankton community structure. The abundance of most phytoplankton taxa was negatively correlated with large <span class="hlt">zooplankton</span> filter feeders, and positively with <span class="hlt">zooplankton</span> predators and concentrations of ammonium nitrogen and partly of phosphates. However, restoration was insufficient in the case of decreasing phytoplankton abundance. The effects of restoration treatments were of less importance for the abundance of phytoplankton than parameters that were independent of the restoration. This was due to the continuous inflow of large loads of nutrients from the area of the river catchment. PMID:25906352</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25906352','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25906352"><span>Phytoplankton Composition and Abundance in Restored Maltański Reservoir under the Influence of Physico-Chemical Variables and <span class="hlt">Zooplankton</span> Grazing Pressure.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kozak, Anna; Gołdyn, Ryszard; Dondajewska, Renata</p> <p>2015-01-01</p> <p>In this paper we present the effects of environmental factors and <span class="hlt">zooplankton</span> food pressure on phytoplankton in the restored man-made Maltański Reservoir (MR). Two methods of restoration: biomanipulation and phosphorus inactivation have been applied in the reservoir. Nine taxonomical groups of phytoplankton represented in total by 183 taxa were stated there. The richest groups in respect of taxa number were green algae, cyanobacteria and diatoms. The diatoms, cryptophytes, chrysophytes, cyanobacteria, green algae and euglenophytes dominated in terms of abundance and/or biomass. There were significant changes among environmental parameters resulting from restoration measures which influenced the phytoplankton populations in the reservoir. These measures led to a decrease of phosphorus concentration due to its chemical inactivation and enhanced <span class="hlt">zooplankton</span> grazing as a result of planktivorous fish stocking. The aim of the study is to analyse the reaction of phytoplankton to the restoration measures and, most importantly, to determine the extent to which the qualitative and quantitative composition of phytoplankton depends on variables changing under the influence of restoration in comparison with other environmental variables. We stated that application of restoration methods did cause significant changes in phytoplankton community structure. The abundance of most phytoplankton taxa was negatively correlated with large <span class="hlt">zooplankton</span> filter feeders, and positively with <span class="hlt">zooplankton</span> predators and concentrations of ammonium nitrogen and partly of phosphates. However, restoration was insufficient in the case of decreasing phytoplankton abundance. The effects of restoration treatments were of less importance for the abundance of phytoplankton than parameters that were independent of the restoration. This was due to the continuous inflow of large loads of nutrients from the area of the river catchment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001PhDT.......107R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001PhDT.......107R"><span>Acoustic estimates of <span class="hlt">zooplankton</span> and micronekton biomass in cyclones and anticyclones of the northeastern Gulf of Mexico</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ressler, Patrick Henry</p> <p>2001-12-01</p> <p>In the Gulf of Mexico (GOM), coarse to mesoscale eddies can enhance the supply of limiting nutrients into the euphotic zone, elevating primary production. This leads to 'oases' of enriched standing stocks of <span class="hlt">zooplankton</span> and micronekton in otherwise oligotrophic deepwater (>200 m bottom depth). A combination of acoustic volume backscattering (Sv) measurements with an acoustic Doppler current profiler (ADCP) and concurrent net sampling of <span class="hlt">zooplankton</span> and micronekton biomass in GOM eddy fields between October 1996 and November 1998 confirmed that cyclones and flow confluences were areas of locally enhanced Sv and standing stock biomass. Net samples were used both to 'sea-truth' the acoustic measurements and to assess the influence of taxonomic composition on measured Sv. During October 1996 and August 1997, a mesoscale (200--300 km diameter) cyclone-anticyclone pair in the northeastern GOM was surveyed as part of a cetacean (whale and dolphin) and seabird habitat, study. Acoustic estimates of biomass in the upper 10--50 m of the water column showed that the cyclone and flow confluence were enriched relative to anticyclonic Loop Current Eddies during both years. Cetacean and seabird survey results reported by other project researchers imply that these eddies provide preferential habitat because they foster locally higher concentrations of higher-trophic-level prey. Sv measurements in November 1997 and 1998 showed that coarse scale eddies (30--150 km diameter) probably enhanced nutrients and S, in the deepwater GOM within 100 km of the Mississippi delta, an area suspected to be important habitat for cetaceans and seabirds. Finally, Sv, data collected during November-December 1997 and October-December 1998 from a mooring at the head of DeSoto Canyon in the northeastern GOM revealed temporal variability at a single location: characteristic temporal decorrelation scales were 1 day (diel vertical migration of <span class="hlt">zooplankton</span> and micronekton) and 5 days (advective processes). A</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005ASAJ..118R1908L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005ASAJ..118R1908L"><span>Lessons learned from multifrequency acoustic studies of <span class="hlt">zooplankton</span> and micronekton in the western Antarctic Peninsula and the Gulf of Maine</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lavery, Andone C.; Lawson, Gareth L.; Wiebe, Peter H.</p> <p>2005-09-01</p> <p>A series of acoustic surveys of <span class="hlt">zooplankton</span> and micronekton have been performed in the Gulf of Maine (GOM), off the northeast United States, and along the western Antarctic Peninsula (WAP). Similar techniques were used to survey these regions, including multifrequency acoustic backscatter (43, 120, 200, 420, 1000 kHz), MOCNESS, CTD, VPR, and in some instances physical microstructure measurements. The GOM is characterized by heterogeneous <span class="hlt">zooplankton</span> communities in which biomass is dominated by abundant millimeter sized copepods, but the scattering is frequently dominated by a smaller number of strong scatterers, such as shelled pteropods and gas-bearing siphonophores. Heterogeneous <span class="hlt">zooplankton</span> communities are also observed in the WAP, but patches of comparatively large (40 mm) Antarctic krill are present and often dominate the scattering. In both regions, striking patterns are evident in the backscatter that can be related to the biological community structure and physical processes. Differences in community structure, however, strongly affect the quantitative inferences that can be made based on the acoustic data. Combining direct biological and environmental information with recently developed scattering models has allowed dominant scatterers to be identified and inferences to be made regarding the physical factors influencing backscatter variability, though only under limited conditions. Highlights from these studies and lessons learned regarding our ability to interpret multifrequency acoustics are presented.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014BGD....1116105M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014BGD....1116105M"><span>The contribution of <span class="hlt">zooplankton</span> faecal pellets to deep carbon transport in the Scotia Sea (Southern Ocean)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Manno, C.; Stowasser, G.; Enderlein, P.; Fielding, S.; Tarling, G. A.</p> <p>2014-11-01</p> <p>The northern Scotia Sea contains the largest seasonal uptake of atmospheric carbon dioxide yet measured in the Southern Ocean. This study examines one of the main routes by which this carbon fluxes to the deep ocean, through the production of faecal pellets (FPs) by the <span class="hlt">zooplankton</span> community. Deep sediment traps were deployed in two sites with contrasting ocean productivity regimes (P3, naturally iron-fertilized and P2, iron-limited), within the same water mass. The magnitude and seasonal pattern of particulate organic carbon (POC) and FPs in the traps was markedly different between the two sites. Maximum fluxes at P3 (22.91 mg C m-2 d-1; 2534 × 10 FP m-2 d-1) were an order of magnitude higher than at P2 (4.01 mg C m-2 d-1; 915 × 10 FP m-2 d-1), with flux at P3 exhibiting a double seasonal peak, compared to a single flatter peak at P2. The maximum contribution of FP carbon to the total amount of POC was twice as high at P3 (91%) compared to P2 (40%). The dominant FP category at P3 varied between round, ovoidal, cylindrical and tabular over the course of the year while, at P2, ovoidal FPs were consistently dominant, always making up more than 60% of the FP assemblage. There was also a difference in the FP state between the two sites, with FPs being relatively intact at P3, while FPs were often fragmented with broken peritrophic membranes at P2. The exception was ovoidal FPs, which were relatively intact at both sites. Our observations suggest that there was community shift from an herbivorous to an omnivorous diet from spring through to autumn at P3 while detritivores had a higher relative importance over the year at P2. Furthermore, the flux was mainly a product of the vertically migrating <span class="hlt">zooplankton</span> community at P3 while the FP flux was more likely to be generated by deeper-dwelling <span class="hlt">zooplankton</span> feeding on recycled material at P2. The results demonstrate that the feeding behavior and vertical distribution of the <span class="hlt">zooplankton</span> community plays a critical role in</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PolSc..12...46T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PolSc..12...46T"><span>Intra-annual seasonal variability of surface <span class="hlt">zooplankton</span> distribution patterns along a 110°E transect of the Southern Ocean in the austral summer of 2011/12</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Takahashi, Kunio T.; Hosie, Graham W.; Odate, Tsuneo</p> <p>2017-06-01</p> <p>Seasonal cycles can provide insight into the interactions between <span class="hlt">zooplankton</span> and the environment. However, few intra-annual seasonal studies have been undertaken in the Southern Ocean. We investigated the composition, distribution, and abundance of micro- and meso-<span class="hlt">zooplankton</span> along the 110°E meridian with three transects in December 2011, January and March 2012 using a Continuous Plankton Recorder. High <span class="hlt">zooplankton</span> abundance was recorded in the Polar Frontal Zone (PFZ) and the Antarctic Zone (AZ) in both day and night at all transects with 179.0-300.9 ind. m-3. The small copepods Oithona similis, Ctenocalanus citer, and copepodites indet (copepod indeterminable) were dominant in the PFZ and AZ communities. Total <span class="hlt">zooplankton</span> abundance was comparatively consistent among transects. Nighttime abundance levels remained high in the AZ in March with high abundance of copepodites indet. This seasonal fluctuation appeared to be influenced by recruitment of new populations. Most core species/taxa, except for O. similis, C. citer, and foraminiferans in the AZ area in early January, exhibited a diel decrease in abundance. A multi-ship intra-annual seasonal survey will help detect their various regional and/or seasonal distribution patterns, and the impacts of environmental change on Southern Ocean pelagic ecosystems.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=188412&keyword=laser&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=188412&keyword=laser&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Lake Superior <span class="hlt">Zooplankton</span> Biomass Predictions from LOPC Tow Surveys Compare Well with a Probability Based Net Survey</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>We conducted a probability-based sampling of Lake Superior in 2006 and compared the <span class="hlt">zooplankton</span> biomass estimate with laser optical plankton counter (LOPC) predictions. The net survey consisted of 52 sites stratified across three depth zones (0-30, 30-150, >150 m). The LOPC tow...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1311842','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1311842"><span>The impact of applied behavior <span class="hlt">analysis</span> on <span class="hlt">diverse</span> areas of research.</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Kazdin, A E</p> <p>1975-01-01</p> <p>The impact of applied behavior <span class="hlt">analysis</span> on various disciplines and areas of research was assessed through two major analyses. First, the relationship of applied behavior <span class="hlt">analysis</span> to the general area of "behavior modification" was evaluated by examining the citation characteristics of journal articles in JABA and three other behavior-modification journals. Second, the penetration of applied behavior <span class="hlt">analysis</span> into <span class="hlt">diverse</span> areas and disciplines, including behavior modification, psychiatry, clinical psychology, education, special education, retardation, speech and hearing, counselling, and law enforcement and correction was assessed. Twenty-five journals representing <span class="hlt">diverse</span> research areas were evaluated from 1968 to 1974 to assess the extent to which operant techniques were applied for therapeutic, rehabilitative, and educative purposes and the degree to which methodological desiderata of applied behavior <span class="hlt">analysis</span> were met. The analyses revealed <span class="hlt">diverse</span> publication outlets for applied behavior <span class="hlt">analysis</span> in various disciplines. PMID:1184488</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=311262&keyword=noise&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=311262&keyword=noise&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Development of a <span class="hlt">Zooplankton</span> Assemblage Indicator for the 2012 National Lakes Assessment: Performance in the Western U.S.</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>We used <span class="hlt">zooplankton</span> count data collected as part of the 2012 National Lakes Assessment (NLA) to develop candidate metrics and multimetric indices (MMIs) for five aggregated ecoregions of the conterminous USA (Coastal Plains, Eastern Highlands, Plains, Upper Midwest, and Western M...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008DSRII..55.1636W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008DSRII..55.1636W"><span>Changes in fecal pellet characteristics with depth as indicators of <span class="hlt">zooplankton</span> repackaging of particles in the mesopelagic zone of the subtropical and subarctic North Pacific Ocean</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wilson, Stephanie E.; Steinberg, Deborah K.; Buesseler, Ken O.</p> <p>2008-07-01</p> <p>We investigated how fecal pellet characteristics change with depth in order to quantify the extent of particle repackaging by mesopelagic <span class="hlt">zooplankton</span> in two contrasting open-ocean systems. Material from neutrally buoyant sediment traps deployed in the summer of 2004 and 2005 at 150, 300, and 500 m was analyzed from both a mesotrophic (Japanese time-series station K2) and an oligotrophic (Hawaii Ocean Time series—HOT station ALOHA) environment in the Pacific Ocean as part of the VERtical Transport In the Global Ocean (VERTIGO) project. We quantified changes in the flux, size, shape, and color of particles recognizable as <span class="hlt">zooplankton</span> fecal pellets to determine how these parameters varied with depth and location. Flux of K2 fecal pellet particulate organic carbon (POC) at 150 and 300 m was four to five times higher than at ALOHA, and at all depths, fecal pellets were two to five times larger at K2, reflective of the disparate <span class="hlt">zooplankton</span> community structure at the two sites. At K2, the proportion of POC flux that consisted of fecal pellets generally decreased with depth from 20% at 150 m to 5% at 500 m, whereas at ALOHA this proportion increased with depth (and was more variable) from 14% to 35%. This difference in the fecal fraction of POC with increasing depth is hypothesized to be due to differences in the extent of <span class="hlt">zooplankton</span>-mediated fragmentation (coprohexy) and in <span class="hlt">zooplankton</span> community structure between the two locations. Both regions provided indications of sinking particle repackaging and <span class="hlt">zooplankton</span> carnivory in the mesopelagic. At ALOHA, this was reflected in a significant increase in the mean flux of larvacean fecal pellets from 150 to 500 m of 3-46 μg C m -2 d -1, respectively, and at K2 a large peak in larvacean mean pellet flux at 300 m of 3.1 mg C m -2 d -1. Peaks in red pellets produced by carnivores occurred at 300 m at K2, and a variety of other fecal pellet classes showed significant changes in their distribution with depth. There was also</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_17 --> <div id="page_18" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="341"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016BGeo...13.1977H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016BGeo...13.1977H"><span>Dead zone or oasis in the open ocean? <span class="hlt">Zooplankton</span> distribution and migration in low-oxygen modewater eddies</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hauss, Helena; Christiansen, Svenja; Schütte, Florian; Kiko, Rainer; Edvam Lima, Miryam; Rodrigues, Elizandro; Karstensen, Johannes; Löscher, Carolin R.; Körtzinger, Arne; Fiedler, Björn</p> <p>2016-04-01</p> <p>The eastern tropical North Atlantic (ETNA) features a mesopelagic oxygen minimum zone (OMZ) at approximately 300-600 m depth. Here, oxygen concentrations rarely fall below 40 µmol O2 kg-1, but are expected to decline under future projections of global warming. The recent discovery of mesoscale eddies that harbour a shallow suboxic (< 5 µmol O2 kg-1) OMZ just below the mixed layer could serve to identify <span class="hlt">zooplankton</span> groups that may be negatively or positively affected by ongoing ocean deoxygenation. In spring 2014, a detailed survey of a suboxic anticyclonic modewater eddy (ACME) was carried out near the Cape Verde Ocean Observatory (CVOO), combining acoustic and optical profiling methods with stratified multinet hauls and hydrography. The multinet data revealed that the eddy was characterized by an approximately 1.5-fold increase in total area-integrated <span class="hlt">zooplankton</span> abundance. At nighttime, when a large proportion of acoustic scatterers is ascending into the upper 150 m, a drastic reduction in mean volume backscattering (Sv) at 75 kHz (shipboard acoustic Doppler current profiler, ADCP) within the shallow OMZ of the eddy was evident compared to the nighttime distribution outside the eddy. Acoustic scatterers avoided the depth range between approximately 85 to 120 m, where oxygen concentrations were lower than approximately 20 µmol O2 kg-1, indicating habitat compression to the oxygenated surface layer. This observation is confirmed by time series observations of a moored ADCP (upward looking, 300 kHz) during an ACME transit at the CVOO mooring in 2010. Nevertheless, part of the diurnal vertical migration (DVM) from the surface layer to the mesopelagic continued through the shallow OMZ. Based upon vertically stratified multinet hauls, Underwater Vision Profiler (UVP5) and ADCP data, four strategies followed by <span class="hlt">zooplankton</span> in response to in response to the eddy OMZ have been identified: (i) shallow OMZ avoidance and compression at the surface (e.g. most calanoid</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61097&keyword=Albuquerque&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61097&keyword=Albuquerque&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>ANNUAL CYCLE OF PERIPHYTON, <span class="hlt">ZOOPLANKTON</span>, AND WATER QUALITY PARAMETERS ALONG A 5 STATION TRANSECT OF ESCAMBIA BAY, FL</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Phytoplankton, <span class="hlt">zooplankton</span> and water quality parameters were monitored monthly along a 5-station transect in Escambia Bay (Pensacola, FL) from fall 1999 to fall 2000. To provide insight into nutrient processing in Escambia Bay and effects of grazers on phytoplankton community st...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19657169','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19657169"><span>Pilot study on control of phytoplankton by <span class="hlt">zooplankton</span> coupling with filter-feeding fish in surface water.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ma, Hua; Cui, Fuyi; Liu, Zhiquan; Fan, Zhenqiang</p> <p>2009-01-01</p> <p>A pilot-scale facility was originally designed to control phytoplankton in algae-laden reservoir water characterized by summer cyanobacteria blooms (mainly Microcystis flos-aquae). The system made good use of the different food habits of Daphnia magna and silver carp. <span class="hlt">Zooplankton</span> (Daphnia magna), filter-feeding fish (silver carp), and <span class="hlt">zooplankton</span> (Daphnia magna) were stocked in three separated tanks in sequence, respectively. Thus, single-cell phytoplankton and some Microcystis flos-aquae in small size were first grazed by Daphnia magna in the first tank, and in the second tank phytoplankton larger than 10 microm were filtered by silver carp, and the concentration of the remaining phytoplankton was further reduced to a rather low level by Daphnia magna in the third tank. The results showed that the system had good removal efficiencies of phytoplankton and chlorophyll a, 86.85% and 59.41%, respectively, and permanganate consumption (COD(Mn)) and turbidity were lowered as well. A high phytoplankton removal efficiency and low cost indicated that the system had a good advantage in pre-treating algae-laden source water in drinking water works.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1991ECSS...32..597L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1991ECSS...32..597L"><span>The effect of Kingston Harbour outflow on the <span class="hlt">zooplankton</span> populations of Hellshire, south-east coast, Jamaica</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lindo, Mona K.</p> <p>1991-06-01</p> <p><span class="hlt">Zooplankton</span> sampling was conducted at 16 stations located at the mouth of Kingston Harbour and throughout the Hellshire area from November 1985 to March 1987. Parameters examined included total biomass, total numbers and numbers of numerically important <span class="hlt">zooplankton</span> species. Maximum values were recorded west of the Harbour mouth (station 1) and these gradually decreased with distance from the Harbour especially at the 'offshore' stations, producing a gradient effect in this area. Mean biomass and abundance for the period sampled ranged from 14 g m -3 and 16 313 individuals m -3 at the western side of the Harbour mouth to 0·4 g m -3 and 172 individuals m -3 at Wreck Reef. Stations within the bays of Hellshire occasionally had values similar to those recorded at the mouth of Kingston Harbour and here there was less evidence of a gradual decline. Considerable monthly fluctuation occurred in these parameters but there was no discernible seasonal pattern. Copepods dominated the population at most stations and the sergestid Lucifer faxoni also proved an important member at the western Harbour mouth station.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21155782','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21155782"><span>Feeding ecology of pelagic fish species in the Gulf of Riga (Baltic Sea): the importance of changes in the <span class="hlt">zooplankton</span> community.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lankov, A; Ojaveer, H; Simm, M; Põllupüü, M; Möllmann, C</p> <p>2010-12-01</p> <p>The feeding ecology of four pelagic fish species was studied in relation to their prey availability in the Gulf of Riga (Baltic Sea) during the summer 1999-2006. The <span class="hlt">zooplankton</span> community was dominated by the cladoceran Bosmina longispina, rotifers Keratella cochlearis and K. quadrata and the copepod Eurytemora affinis, with the highest interannual variability in abundance recorded for B. longispina. The last influenced the diet of adult sprat Sprattus sprattus, juvenile smelt Osmerus eperlanus and three-spined stickleback Gasterosteus aculeatus as these were strongly selecting for B. longispina. The fish feeding activity did not match the abundance dynamics of their preferred prey, suggesting that fishes may switch to consume other prey in case the preferred diet was limited. A considerable dietary overlap indicated high potential competition between pelagic fish species. While herring Clupea harengus membras and G. aculeatus were relying on very different food, the diets of young O. eperlanus and G. aculeatus were very similar. Interannual variability in <span class="hlt">zooplankton</span> composition and abundance significantly affected the diet composition of fishes, but those changes were insufficient to exert a consistent influence upon fish feeding activity and total amounts of <span class="hlt">zooplankton</span> consumed. © 2010 The Authors. Journal of Fish Biology © 2010 The Fisheries Society of the British Isles.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1000682','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1000682"><span>Relationship of lake herring (Coregonus artedi) gill raker characteristics to retention probabilities of <span class="hlt">zooplankton</span> prey</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Link, Jason; Hoff, Michael H.</p> <p>1998-01-01</p> <p>We measured morphometric and meristic parameters of gill rakers from the first gill arch of 36 adult lake herring (Coregonus artedi) from Lake Superior that ranged in length from 283–504 mm. These data, coupled with the mean of the smallest two body dimensions (length, width, or breadth) of various <span class="hlt">zooplankton</span> prey, allowed us to calculate retention probabilities for <span class="hlt">zooplankton</span> taxa that are common in Lake Superior. The mean of the smallest two body dimensions was positively correlated with body length for cladocerans and copepods. The large cladoceran, Daphnia g. mendotae, is estimated to be retained at a greater probability (74%) than smaller cladocerans (18%-38%). The same is true for the large copepod, Limnocalanus macrurus (60%), when compared to smaller copepods (6–38%). Copepods have a lower probability of being retained than cladocerans of similar length. Lake herring gill rakers and total filtering area are also positively correlated with fish total length. These data provide further evidence that lake herring are primarily planktivores in Lake Superior, and our data show that lake herring can retain a broad range of prey sizes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27728988','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27728988"><span><span class="hlt">Analysis</span> of mitochondrial genetic <span class="hlt">diversity</span> of Ustilago maydis in Mexico.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Jiménez-Becerril, María F; Hernández-Delgado, Sanjuana; Solís-Oba, Myrna; González Prieto, Juan M</p> <p>2018-01-01</p> <p>The current understanding of the genetic <span class="hlt">diversity</span> of the phytopathogenic fungus Ustilago maydis is limited. To determine the genetic <span class="hlt">diversity</span> and structure of U. maydis, 48 fungal isolates were analyzed using mitochondrial simple sequence repeats (SSRs). Tumours (corn smut or 'huitlacoche') were collected from different Mexican states with <span class="hlt">diverse</span> environmental conditions. Using bioinformatic tools, five microsatellites were identified within intergenic regions of the U. maydis mitochondrial genome. SSRMUM4 was the most polymorphic marker. The most common repeats were hexanucleotides. A total of 12 allelic variants were identified, with a mean of 2.4 alleles per locus. An estimate of the genetic <span class="hlt">diversity</span> using <span class="hlt">analysis</span> of molecular variance (AMOVA) revealed that the highest variance component is within states (84%), with moderate genetic differentiation between states (16%) (F ST  = 0.158). A dendrogram generated using the unweighted paired-grouping method with arithmetic averages (UPGMA) and the Bayesian <span class="hlt">analysis</span> of population structure grouped the U. maydis isolates into two subgroups (K = 2) based on their shared SSRs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA108840','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA108840"><span>Community Structure and Standing Stock of Epibenthic <span class="hlt">Zooplankton</span> at Five Sites in Grays Harbor, Washington</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1981-09-01</p> <p>4 GRAYS HARBOR AND CHEHALIS RIVER IMPROVEMENTS TO NAVIGATION ENVIRONMENTAL STUDIES COMMUNITY STRUCTURE AND STANDING © STOCK OF EPIBENTHIC... FISHERIES RESEARCH INSTITUTE %r UNIVERSITY OF WASHINGTON B of Engineers SEPTEMBER 1981 Seattle District(DISTRIBUTION STATEM EN T. -A-8-1 2 7 Approved...PERIOD COVERED Community Structure and Standing Stock of Final May 7. 1981 Epibenthic <span class="hlt">Zooplankton</span> at Five Sites in 6. PERFORMING ORG. REPORT NUMBER</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28052397','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28052397"><span>Herbivory enhances the <span class="hlt">diversity</span> of primary producers in pond ecosystems.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Leibold, Mathew A; Hall, Spencer R; Smith, Val H; Lytle, David A</p> <p>2017-01-01</p> <p><span class="hlt">Diversity</span> of primary producer is often surprisingly high, despite few limiting factors such as nutrients and light to facilitate species coexistence. In theory, the presence of herbivores could increase the <span class="hlt">diversity</span> of primary producers, resolving this "paradox of the plankton." Little experimental evidence supports this natural enemies hypothesis, but previous tests suffer from several deficiencies. Previous experiments often did not allow for multigeneration effects; utilized low <span class="hlt">diversity</span> assemblages of herbivores; and limited opportunities for new primary producer and herbivore species to colonize and undergo species sorting that favors some species over others. Using pond plankton, we designed a mesocosm experiment that overcame these problems by allowing more time for interactions over multiple generations, openness to allow new colonists, and manipulated higher <span class="hlt">diversity</span> of primary producers and grazers than have previous studies. With this design, the presence of <span class="hlt">zooplankton</span> grazers doubled phytoplankton richness. The additional phytoplankton species in grazed mesocosms were larger, and therefore likely more grazer resistant. Furthermore, phytoplankton richness in grazed mesocosms was similar to that observed in natural ponds whereas it was much lower in mesocosms without grazers. However, stoichiometric imbalance caused by variation in nitrogen : phosphorus ratios and light supply did not alter phytoplankton richness. Therefore, grazers enhanced primary producer richness more strongly than ratios of nutrient supply (even though both grazing and ratios of resource supply altered composition of primary producer assemblages). Taken together, these experimental and field data show that grazing from a <span class="hlt">diverse</span> assemblage of herbivores greatly elevated richness of phytoplankton producers in pond ecosystems. © 2016 by the Ecological Society of America.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=64657&keyword=hurricanes&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=64657&keyword=hurricanes&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>SPATIAL AND TEMPORAL VARIABILITY IN <span class="hlt">ZOOPLANKTON</span> COMMUNITY DYNAMICS IN THREE URBANIZED BAYOUS OF THE PENSACOLA BAY SYSTEM, FLORIDA, USA</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Spatial and temporal patterns in <span class="hlt">zooplankton</span> community composition and abundance in near-coastal areas of the Gulf of Mexico are not well understood. This survey provides information on spatial and temporal differences in zoolplankton community composition and abundance for a coa...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017CSR...149..151F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017CSR...149..151F"><span>Expanding <span class="hlt">zooplankton</span> standing stock estimation from meso- to metazooplankton: A case study in the N. Aegean Sea (Mediterranean Sea)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Frangoulis, Constantin; Grigoratou, Maria; Zoulias, Theodore; Hannides, Cecelia C. S.; Pantazi, Maria; Psarra, Stella; Siokou, Ioanna</p> <p>2017-10-01</p> <p>Although metazooplankton includes a wide size range of organisms, our knowledge is essentially based on mesozooplankton. A first estimation of the metazooplankton standing stock in a Mediterranean area, and of its size fractions and functional groups are provided by combining data out of three nets with different mesh sizes (45, 200 and 500 μm). Data were collected along a gradient of oligotrophy in the frontal area created, where the waters of Black Sea origin meet those of Levantine Sea origin (Northeast Aegean Sea, Eastern Mediterranean). Metazooplankton biomass was dominated by mesozooplankton (0.2-2 mm), while meso- and microzooplankton (<0.2 mm) shared dominance of abundance. Copepods dominated both in abundance and biomass and were followed by nauplii in abundance and gelatinous carnivores or decapod-euphausiid larvae in biomass. The spatiotemporal variability of metazoans stock, biomass-size spectra linearity, carnivorous group contribution and copepod <span class="hlt">diversity</span>, supported that metazooplankton tends to recede from steady-state when approaching less oligotrophic dynamic areas (such as fronts) or dynamic periods (such as the spring bloom). The need and the difficulties of obtaining a larger picture from a wider size range of metazoans for understanding the role of <span class="hlt">zooplankton</span> are stressed.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19928460','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19928460"><span>Composition and abundance of <span class="hlt">zooplankton</span> groups from a coral reef lagoon in Puerto Morelos, Quintana Roo, Mexico, during an annual cycle.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Alvarez-Cadena, José N; Ordóñez-López, Uriel; Almaral-Mendivil, Alma Rosa; Uicab-Sabido, Amira</p> <p>2009-09-01</p> <p><span class="hlt">Zooplankton</span> sampling was carried out monthly from January to December 1990 at station A near the coastline, and station B near the reef barrier, in a tropical coral reef lagoon in the Mexican Caribbean Sea. Samplings were made at midnight, near surface, with a conical net (mouth 0.40 m, mesh 330 microm) for 10 min. Salinity varied from 35.1 to 36.3 psu and temperature from 26.3 to 30.2 degrees C. The Bray-Curtis test applied to these results has defined two seasons: the dry season from November to May, and the wet season from June to October. A total of 37 <span class="hlt">zooplankton</span> groups were found. Copepods were the most abundant contributing 49.0% of the total capture with Acartia espinata, Calanopia americana and Farranula gracilis as the most numerous. In the total <span class="hlt">zooplankton</span>, however, cirripeds captured in only 15 samples of 24 were second in abundance (20.9%). Decapods, present all year-round and more abundant during the wet season, were third and contributed 19.2%. The rest of the groups were scarce and only amphipods (2.4%) and larvaceans (2.0%) were relatively abundant. The abundance of captured organisms correlated with the abiotic factors measured, thus, in the dry season, abundance was lower (mean 7.3 orgs/m3), while in the wet season the mean catch was 36.8 orgs/m3.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4670095','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4670095"><span>Diel Vertical Dynamics of Gelatinous <span class="hlt">Zooplankton</span> (Cnidaria, Ctenophora and Thaliacea) in a Subtropical Stratified Ecosystem (South Brazilian Bight)</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Nogueira Júnior, Miodeli; Brandini, Frederico Pereira; Codina, Juan Carlos Ugaz</p> <p>2015-01-01</p> <p>The diel vertical dynamics of gelatinous <span class="hlt">zooplankton</span> in physically stratified conditions over the 100-m isobath (~110 km offshore) in the South Brazilian Bight (26°45’S; 47°33’W) and the relationship to hydrography and food availability were analyzed by sampling every six hours over two consecutive days. <span class="hlt">Zooplankton</span> samples were taken in three depth strata, following the vertical structure of the water column, with cold waters between 17 and 13.1°C, influenced by the South Atlantic Central Water (SACW) in the lower layer (>70 m); warm (>20°C) Tropical Water in the upper 40 m; and an intermediate thermocline with a deep chlorophyll-a maximum layer (0.3–0.6 mg m-3). Two distinct general patterns were observed, emphasizing the role of (i) physical and (ii) biological processes: (i) a strong influence of the vertical stratification, with most <span class="hlt">zooplankton</span> absent or little abundant in the lower layer. The influence of the cold SACW on the bottom layer apparently restricted the vertical occupation of most species, which typically inhabit epipelagic warm waters. Even among migratory species, only a few (Aglaura hemistoma, Abylopsis tetragona eudoxids, Beroe sp., Thalia democratica, Salpa fusiformis) crossed the thermocline and reached the bottom layer. (ii) A general tendency of partial migrations, with variable intensity depending on the different species and developmental stages; populations tended to be more widely distributed through the water column during daylight, and to become more aggregated in the upper layer during the night, which can be explained based on the idea of the “hunger-satiation hypothesis”, maximizing feeding and minimizing the chances of being predated. PMID:26637179</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26637179','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26637179"><span>Diel Vertical Dynamics of Gelatinous <span class="hlt">Zooplankton</span> (Cnidaria, Ctenophora and Thaliacea) in a Subtropical Stratified Ecosystem (South Brazilian Bight).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Nogueira Júnior, Miodeli; Brandini, Frederico Pereira; Codina, Juan Carlos Ugaz</p> <p>2015-01-01</p> <p>The diel vertical dynamics of gelatinous <span class="hlt">zooplankton</span> in physically stratified conditions over the 100-m isobath (~110 km offshore) in the South Brazilian Bight (26°45'S; 47°33'W) and the relationship to hydrography and food availability were analyzed by sampling every six hours over two consecutive days. <span class="hlt">Zooplankton</span> samples were taken in three depth strata, following the vertical structure of the water column, with cold waters between 17 and 13.1°C, influenced by the South Atlantic Central Water (SACW) in the lower layer (>70 m); warm (>20°C) Tropical Water in the upper 40 m; and an intermediate thermocline with a deep chlorophyll-a maximum layer (0.3-0.6 mg m-3). Two distinct general patterns were observed, emphasizing the role of (i) physical and (ii) biological processes: (i) a strong influence of the vertical stratification, with most <span class="hlt">zooplankton</span> absent or little abundant in the lower layer. The influence of the cold SACW on the bottom layer apparently restricted the vertical occupation of most species, which typically inhabit epipelagic warm waters. Even among migratory species, only a few (Aglaura hemistoma, Abylopsis tetragona eudoxids, Beroe sp., Thalia democratica, Salpa fusiformis) crossed the thermocline and reached the bottom layer. (ii) A general tendency of partial migrations, with variable intensity depending on the different species and developmental stages; populations tended to be more widely distributed through the water column during daylight, and to become more aggregated in the upper layer during the night, which can be explained based on the idea of the "hunger-satiation hypothesis", maximizing feeding and minimizing the chances of being predated.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70168363','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70168363"><span>The influence of a severe reservoir drawdown on springtime <span class="hlt">zooplankton</span> and larval fish assemblages in Red Willow Reservoir, Nebraska</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>DeBoer, Jason A.; Webber, Christa M.; Dixon, Taylor A.; Pope, Kevin L.</p> <p>2016-01-01</p> <p>Reservoirs can be dynamic systems, often prone to unpredictable and extreme water-level fluctuations, and can be environments where survival is difficult for <span class="hlt">zooplankton</span> and larval fish. Although numerous studies have examined the effects of extreme reservoir drawdown on water quality, few have examined extreme drawdown on both abiotic and biotic characteristics. A fissure in the dam at Red Willow Reservoir in southwest Nebraska necessitated an extreme drawdown; the water level was lowered more than 6 m during a two-month period, reducing reservoir volume by 76%. During the subsequent low-water period (i.e., post-drawdown), spring sampling (April–June) showed dissolved oxygen concentration was lower, while turbidity and chlorophyll-a concentration were greater, relative to pre-drawdown conditions. Additionally, there was an overall increase in <span class="hlt">zooplankton</span> density, although there were differences among taxa, and changes in mean size among taxa, relative to pre-drawdown conditions. <span class="hlt">Zooplankton</span> assemblage composition had an average dissimilarity of 19.3% from pre-drawdown to post-drawdown. The ratio of zero to non-zero catches was greater post-drawdown for larval common carp and for all larval fishes combined, whereas we observed no difference for larval gizzard shad. Larval fish assemblage composition had an average dissimilarity of 39.7% from pre-drawdown to post-drawdown. Given the likelihood that other dams will need repair or replacement in the near future, it is imperative for effective reservoir management that we anticipate the likely abiotic and biotic responses of reservoir ecosystems as these management actions will continue to alter environmental conditions in reservoirs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/15032067','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/15032067"><span>[Limnetic <span class="hlt">zooplankton</span> run-off a high-head dam and their fate in a river with high current velocity (case of the Krasnoiarsk hydroelectric power station on the Yenisei river].</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dubovskaia, O P; Gladyshev, M I; Makhutova, O N</p> <p>2004-01-01</p> <p>The vertical distribution of net <span class="hlt">zooplankton</span> in head-water of Krasnoyarsk hydroelectric power station and its horizontal distribution in the tail-water were studied during two years in winter and summer seasons. In order to distinguish living and dead individuals the special staining was used. It was revealed that on average 77% of living plankton pass through high-head dam with deep water scoop to the tailwater. While passing through dam aggregates some individuals of the reservoir plankton are traumatized and die, that results in some increase of portion of dead individuals in the tail water near dam (from 3 to 6%). Alive <span class="hlt">zooplankton</span> passed through the dam aggregates is eliminated under the Upper Yenisei highly turbulent conditions. There is approximately 10% of it in 32 km from the dam if compare with biomass in 20-40 m layer of reservoir, the portion of dead increases to 11%. The biomass of <span class="hlt">zooplankton</span> suspended in the water column of the tail-water sometimes increases (till > 1 g/m3) due to large Copepoda Heteroscope borealis, which inhabits near-bottom and near-shore river zones and can be found in the central part of the river during reproductive period. Limnetic <span class="hlt">zooplankton</span> from the reservoir cannot be considered as important food for planktivores in the tail-water.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3792109','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3792109"><span>Effects of Crude Oil Exposure on Bioaccumulation of Polycyclic Aromatic Hydrocarbons and Survival of Adult and Larval Stages of Gelatinous <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Almeda, Rodrigo; Wambaugh, Zoe; Chai, Chao; Wang, Zucheng; Liu, Zhanfei; Buskey, Edward J.</p> <p>2013-01-01</p> <p>Gelatinous <span class="hlt">zooplankton</span> play an important role in marine food webs both as major consumers of metazooplankton and as prey of apex predators (e.g., tuna, sunfish, sea turtles). However, little is known about the effects of crude oil spills on these important components of planktonic communities. We determined the effects of Louisiana light sweet crude oil exposure on survival and bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) in adult stages of the scyphozoans Pelagia noctiluca and Aurelia aurita and the ctenophore Mnemiopsis leidyi, and on survival of ephyra larvae of A. aurita and cydippid larvae of M. leidyi, in the laboratory. Adult P. noctiluca showed 100% mortality at oil concentration ≥20 µL L−1 after 16 h. In contrast, low or non-lethal effects were observed on adult stages of A. aurita and M. leidyi exposed at oil concentration ≤25 µL L−1 after 6 days. Survival of ephyra and cydippid larva decreased with increasing crude oil concentration and exposition time. The median lethal concentration (LC50) for ephyra larvae ranged from 14.41 to 0.15 µL L−1 after 1 and 3 days, respectively. LC50 for cydippid larvae ranged from 14.52 to 8.94 µL L−1 after 3 and 6 days, respectively. We observed selective bioaccumulation of chrysene, phenanthrene and pyrene in A. aurita and chrysene, pyrene, benzo[a]pyrene, benzo[b]fluoranthene, benzo[k]fluoranthene, and benzo[a]anthracene in M. leidyi. Overall, our results indicate that (1) A. aurita and M. leidyi adults had a high tolerance to crude oil exposure compared to other <span class="hlt">zooplankton</span>, whereas P. noctiluca was highly sensitive to crude oil, (2) larval stages of gelatinous <span class="hlt">zooplankton</span> were more sensitive to crude oil than adult stages, and (3) some of the most toxic PAHs of crude oil can be bioaccumulated in gelatinous <span class="hlt">zooplankton</span> and potentially be transferred up the food web and contaminate apex predators. PMID:24116004</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27159716','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27159716"><span>Molecular <span class="hlt">diversity</span> of some species belonging to the genus Daphnia O. F. Müller, 1785 (Crustacea: Cladocera) in Turkey.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Özdemir, Ebru; Altındağ, Ahmet; Kandemir, İrfan</p> <p>2017-05-01</p> <p>Daphnia is a freshwater <span class="hlt">zooplankton</span> species with controversial taxonomy due to its high morphological variation linked to environmental factors and inter-specific hybridization and polyploidy in some groups. The aim of the present study is to examine molecular <span class="hlt">diversity</span> of some Daphnia species in Turkey and to establish DNA barcodes of Turkish Daphnia species. Sequence <span class="hlt">analysis</span> was performed using 540 bp region of cytochrome oxidase subunit I gene of mitochondrial DNA. A total of 34 haplotypes have been identified for Turkey. Daphnia pulex complex was divided into two clades with 16.1% sequence divergence according to molecular taxonomy based on Kimura 2-parameter. The clade which was molecularly diverged from Daphnia pulex with 16.1% sequence divergence was found to show 99% similarity with Daphnia cf. pulicaria (sensu Alonso 1996) instead of Daphnia pulicaria Forbes, 1893. Furthermore, this study has contributed to Turkish zoogeography by demonstrating the distribution of Daphnia species in Turkey.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRI..130...63D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRI..130...63D"><span>From the epipelagic zone to the abyss: Trophic structure at two seamounts in the subtropical and tropical Eastern Atlantic - Part I <span class="hlt">zooplankton</span> and micronekton</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Denda, Anneke; Stefanowitsch, Benjamin; Christiansen, Bernd</p> <p>2017-12-01</p> <p>Specific mechanisms, driving trophic interactions within the pelagic community may be highly variable in different seamount systems. This study investigated the trophic structure of <span class="hlt">zooplankton</span> and micronekton above and around Ampère and Senghor, two shallow seamounts in the subtropical and tropical Eastern Atlantic, and over the adjacent abyssal plains. For the identification of food sources and trophic positions stable isotope ratios (δ13C and δ15N) were used. δ13C ranged from -24.7‰ to -15.0‰ and δ15N covered a total range of 0.9-15.9‰. Based on epipelagic particulate organic matter, <span class="hlt">zooplankton</span> and micronekton usually occupied the 1st-3rd trophic level, including herbivorous, omnivorous and carnivorous taxa. δ13C and δ15N values were generally lower in <span class="hlt">zooplankton</span> and micronekton of the subtropical waters as compared to the tropical region, due to the differing nutrient availability and phytoplankton communities. Correlations between δ13C and δ15N values of particulate organic matter, <span class="hlt">zooplankton</span>, micronekton and benthopelagic fishes suggest a linear food chain based on a single energy source from primary production for Ampère Seamount, but no evidence was found for an autochthonus seamount production as compared to the open ocean reference site. Between Senghor Seamount and the open ocean δ13C signatures indicate that hydrodynamic effects at seamounts may modify the energy supply at times, but evidence for a seamount effect on the trophic structure of the pelagic communities was weak, which supports the assumption that seamount communities rely to a large extent on advected food sources.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3391295','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3391295"><span>Strong Spatial Influence on Colonization Rates in a Pioneer <span class="hlt">Zooplankton</span> Metacommunity</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J.</p> <p>2012-01-01</p> <p>The magnitude of community-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major <span class="hlt">zooplankton</span> taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect <span class="hlt">zooplankton</span> colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18–2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance. PMID:22792241</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_18 --> <div id="page_19" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="361"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22792241','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22792241"><span>Strong spatial influence on colonization rates in a pioneer <span class="hlt">zooplankton</span> metacommunity.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J</p> <p>2012-01-01</p> <p>The magnitude of community-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major <span class="hlt">zooplankton</span> taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect <span class="hlt">zooplankton</span> colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18-2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME44A0846F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME44A0846F"><span>Molecular Quantification of <span class="hlt">Zooplankton</span> Gut Content: The Case For qPCR</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Frischer, M. E.; Walters, T. L.; Gibson, D. M.; Nejstgaard, J. C.; Troedsson, C.</p> <p>2016-02-01</p> <p>The ability to obtain information about feeding selectivity and rates in situ for <span class="hlt">zooplankton</span> is vital for understanding the mechanisms structuring marine ecosystems. However, directly estimating feeding selection and rates of <span class="hlt">zooplankton</span>, without bias, associated with culturing conditions has been notoriously difficult. A potential approach for addressing this problem is to target prey-specific DNA as a marker for prey ingestion and selection. In this study we report the development of a differential length amplification quantitative PCR (dla-qPCR) assay targeting the 18S rRNA gene to validate the use of a DNA-based approach to quantify consumption of specific plankton prey by the pelagic tunicate (doliolid) Dolioletta gegenbauri. Compared to copepods and other marine animals, the digestion of prey genomic DNA inside the gut of doliolids is low. This method minimizes potential underestimations, and therefore allows prey DNA to be used as an effective indicator of prey consumption. We also present an initial application of a qPCR-assay to estimate consumption of specific prey species on the southeastern continental shelf of the U.S., where doliolids stochastically bloom in response to upwelling events. Estimated feeding rates, based on qPCR, were in the same range as those estimated from clearance rates in laboratory feeding studies. In the field, consumption of specific prey, including the centric diatom Thalassiosira spp. was detected in the gut of wild caught D. gegenbauri at the levels consistent with their abundance in the water column at the time of collection. Thus, both experimental and field investigations support the hypothesis that a qPCR approach will be useful for the quantitative investigation of the in situ diet of D. gegenbauri without introduced bias' associated with cultivation.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23960001','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23960001"><span>Effects of drought and pluvial periods on fish and <span class="hlt">zooplankton</span> communities in prairie lakes: systematic and asystematic responses.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Starks, Elizabeth; Cooper, Ryan; Leavitt, Peter R; Wissel, Björn</p> <p>2014-04-01</p> <p>The anticipated impacts of climate change on aquatic biota are difficult to evaluate because of potentially contrasting effects of temperature and hydrology on lake ecosystems, particularly those closed-basin lakes within semiarid regions. To address this shortfall, we quantified decade-scale changes in chemical and biological properties of 20 endorheic lakes in central North America in response to a pronounced transition from a drought to a pluvial period during the early 21st century. Lakes exhibited marked temporal changes in chemical characteristics and formed two discrete clusters corresponding to periods of substantially different effective moisture (as Palmer Drought Severity Index, PDSI). Discriminant function <span class="hlt">analysis</span> (DFA) explained 90% of variability in fish assemblage composition and showed that fish communities were predicted best by environmental conditions during the arid interval (PDSI <-2). DFA also predicted that lakes could support more fish species during pluvial periods, but their occurrences may be limited by periodic stress due to recurrent droughts and physical barriers to colonization. <span class="hlt">Zooplankton</span> taxonomic assemblages in fishless lakes were resilient to short-term changes in meteorological conditions, and did not vary between drought and deluge periods. Conversely, <span class="hlt">zooplankton</span> taxa in fish-populated lakes decreased substantially in biomass during the wet interval, likely due to increased zooplanktivory by fish. The powerful effects of such climatic variability on hydrology and the strong subsequent links to water chemistry and biota indicate that future changes in global climate could result in significant restructuring of aquatic communities. Together these findings suggest that semiarid lakes undergoing temporary climate shifts provide a useful model system for anticipating the effects of global climate change on lake food webs. © 2013 John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1015655','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1015655"><span>Effects of hydrology on <span class="hlt">zooplankton</span> communities in high-mountain ponds, Mount Rainier National Park, USA</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Girdner, Scott; Larson, Gary L.</p> <p>1995-01-01</p> <p>Ten high-mountain ponds in Mount Rainier National Park, Washington State, were studied from ice-out in June through September1992 to investigate the influences of fluctuating pond volumes on <span class="hlt">zooplankton</span> communities. All of the ponds were at maximum volume immediately after ice-out. The temporary pond with the shortest wet phase was inhabited by rotifer taxa with short generation times and a crustacean taxon with the ability to encyst as drought-resistant resting bodies at immature stages of development. Dominant <span class="hlt">zooplankton</span> taxa in three other temporary ponds and six permanent ponds were similar. Rotifer densities typically were lower in temporary ponds relative to those in permanent ponds, although Brachionus urceolaris was abundant shortly before the temporary ponds dried. Large volume loss was associated with large declines in total abundances of crustacean populations. Daphnia rosea was not present in temporary ponds following fall recharge. In deep-permanent ponds, copepods had slower developmental rates, smaller temporal changes in total abundances of crustacean populations and two additional large-bodied crustacean taxa were present relative to the characteristics of crustacean communities in shallow-permanent ponds. Owing to their small sizes and sensitivity to environmental change, collectively ponds such as these may provide an early signal of long-term climate change in aquatic systems.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOS.B24A0323L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOS.B24A0323L"><span>Estimates of Gelatinous <span class="hlt">Zooplankton</span> Carbon Flux in the Global Oceans</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Luo, J. Y.; Condon, R.; Cowen, R. K.</p> <p>2016-02-01</p> <p>Gelatinous <span class="hlt">zooplankton</span> (GZ), which include the cnidarians, ctenophores, and pelagic tunicates, are a common feature of marine ecosystems worldwide, but their contribution to global biogeochemical fluxes has never been assessed. We constructed a carbon-cycle model with a single, annual time-step and resolved to a 5° spatial grid for the three major GZ groups in order to evaluate the GZ-mediated carbon fluxes and export to depth. Biomass inputs (totaling 0.149 Pg C) were based off of Lucas et al. (2014) and updated using the JeDI database (Condon et al. 2015). From the upper ocean, biomass export flux from cnidarians, ctenophores, and tunicates totaled 2.96 ± 2.82 Pg C y-1, though only 0.199 ± 0.023 Pg C y-1 of GZ carbon were transferred to upper trophic levels, roughly amounting to one-quarter of all mesozooplankton production flux. In contrast, GZ fluxes to DOC only comprised ca. 2% of labile DOC flux. Egestion flux from the upper ocean totaled 2.56 ± 3.35 Pg C y-1, with over 80% being fast-sinking tunicate fecal pellets. Due to fast sinking rates of carcasses and fecal pellets, 26% of all C export from the upper ocean reached the seafloor, such that GZ fecal matter is estimated to comprise between 20-30% of global POC surface export and 11-30% of POC seafloor deposition. Finally, results from sensitivity analyses showed no increase in cnidarian and ctenophore export fluxes with increased temperature and jelly biomass, though tunicate export fluxes showed some increase with both temperature and biomass. These results suggest that current estimates of global POC flux from the surface oceans, which range between 8.6 - 12.9 Pg C y-1, may be underestimated by as much as 20 - 25%, implying a definite need to incorporate GZ mediated flux in estimating the biological pump transfer efficiency. Our study represents the first effort to quantify the role of gelatinous <span class="hlt">zooplankton</span> in the global marine carbon cycle.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20957966','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20957966"><span>Species dispersal rates alter <span class="hlt">diversity</span> and ecosystem stability in pond metacommunities.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Howeth, Jennifer G; Leibold, Mathew A</p> <p>2010-09-01</p> <p>Metacommunity theory suggests that relationships between <span class="hlt">diversity</span> and ecosystem stability can be determined by the rate of species dispersal among local communities. The predicted relationships, however, may depend upon the relative strength of local environmental processes and disturbance. Here we evaluate the role of dispersal frequency and local predation perturbations in affecting patterns of <span class="hlt">diversity</span> and stability in pond plankton metacommunities. Pond metacommunities were composed of three mesocosm communities: one of the three communities maintained constant "press" predation from a selective predator, bluegill sunfish (Lepomis macrochirus); the second community maintained "press" conditions without predation; and the third community experienced recurrent "pulsed" predation from bluegill sunfish. The triads of pond communities were connected at either no, low (0.7%/d), or high (20%/d) planktonic dispersal. Richness and composition of <span class="hlt">zooplankton</span> and stability of plankton biomass and ecosystem productivity were measured at local and regional spatial scales. Dispersal significantly affected <span class="hlt">diversity</span> such that local and regional biotas at the low dispersal rate maintained the greatest number of species. The unimodal local dispersal-<span class="hlt">diversity</span> relationship was predator-dependent, however, as selective press predation excluded species regardless of dispersal. Further, there was no effect of dispersal on beta <span class="hlt">diversity</span> because predation generated local conditions that selected for distinct community assemblages. Spatial and temporal ecosystem stability responded to dispersal frequency but not predation. Low dispersal destabilized the spatial stability of producer biomass but stabilized temporal ecosystem productivity. The results indicate that selective predation can prevent species augmentation from mass effects but has no apparent influence on stability. Dispersal rates, in contrast, can have significant effects on both species <span class="hlt">diversity</span> and ecosystem</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004DSRI...51.1283R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004DSRI...51.1283R"><span>How well does the Continuous Plankton Recorder (CPR) sample <span class="hlt">zooplankton</span>? A comparison with the Longhurst Hardy Plankton Recorder (LHPR) in the northeast Atlantic</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Richardson, Anthony J.; John, Eurgain H.; Irigoien, Xabier; Harris, Roger P.; Hays, Graeme C.</p> <p>2004-09-01</p> <p>The Continuous Plankton Recorder (CPR) survey has collected data on basin-scale <span class="hlt">zooplankton</span> abundance in the North Atlantic since the 1930s. These data have been used in many studies to elucidate seasonal patterns and long-term change in plankton populations, as well as more recently to validate ecosystem models. There has, however, been relatively little comparison of the data from the CPR with that from other samplers. In this study we compare <span class="hlt">zooplankton</span> abundance estimated from the CPR in the northeast Atlantic with near-surface samples collected by a Longhurst-Hardy Plankton Recorder (LHPR) at Ocean Weather Station India (59°N, 19°W) between 1971 and 1975. Comparisons were made for six common copepods in the region: Acartia clausi, Calanus finmarchicus, Euchaeta norvegica, Metridia lucens, Oithona sp., and Pleuromamma robusta. Seasonal cycles based on CPR data were similar to those recorded by the LHPR. Differences in absolute abundances were apparent, however, with the CPR underestimating abundances by a factor of between 5 and 40, with the exception of A. clausi. Active avoidance by <span class="hlt">zooplankton</span> is thought to be responsible. This avoidance is species specific, so that care must be taken describing communities, as the CPR emphasises those species that are preferentially caught, a problem common to many plankton samplers.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/biblio/518387-solar-uvb-induced-dna-damage-photoenzymatic-dna-repair-antarctic-zooplankton','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/518387-solar-uvb-induced-dna-damage-photoenzymatic-dna-repair-antarctic-zooplankton"><span>Solar UVB-induced DNA damage and photoenzymatic DNA repair in antarctic <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Malloy, K.D.; Holman, M.A.; Mitchell, D.</p> <p></p> <p>The detrimental effects of elevated intensities of mid-UV radiation (UVB), a result of stratospheric ozone depletion during the austral spring, on the primary producers of the Antarctic marine ecosystem have been well documented. Here we report that natural populations of Antarctic <span class="hlt">zooplankton</span> also sustain significant DNA damage [measured as cyclobutane pyrimidine dimers (CPDs)] during periods of increased UVB flux. This is the first direct evidence that increased solar UVB may result in damage to marine organisms other than primary producers in Antarctica. The extent of DNA damage in pelagic icefish eggs correlated with daily incident UVB irradiance, reflecting the differencemore » between acquisition and repair of CPDs. Patterns of DNA damage in fish larvae did not correlated with daily UVB flux, possibly due to different depth distributions and/or different capacities for DNA repair. Clearance of CPDs by Antarctic fish and krill was mediated primarily by the photoenzymatic repair system. Although repair rates were large for all species evaluated, they were apparently inadequate to prevent the transient accumulation of substantial CPD burdens. The capacity for DNA repair in Antarctic organisms was highest in those species whose early life history stages occupy the water column during periods of ozone depletion (austral spring) and lowest in fish species whose eggs and larvae are abundant during winter. Although the potential reduction in fitness of Antarctic <span class="hlt">zooplankton</span> resulting from DNA damage is unknown, we suggest that increased solar UV may reduce recruitment and adversely affect trophic transfer of productivity by affecting heterotrophic species as well as primary producers. 54 refs., 4 figs., 2 tabs.« less</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA617579','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA617579"><span><span class="hlt">Zooplankton</span> and Micronekton Distribution and Interaction with Predators at the Northwest Atlantic Shelf Break and its Canyons</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2014-09-30</p> <p>with marine mammals and other predators . APPROACH The datasets being examined in this project include: 1. Depth-stratified net samples from 1...with Predators at the Northwest Atlantic Shelf Break and its Canyons Gareth L. Lawson, Andone C. Lavery, & Peter H. Wiebe Woods Hole...determining the distribution, abundance, and community composition of <span class="hlt">zooplankton</span> and micronekton and their association with predators (including marine</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26039111','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26039111"><span>Is Ambient Light during the High Arctic Polar Night Sufficient to Act as a Visual Cue for <span class="hlt">Zooplankton</span>?</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cohen, Jonathan H; Berge, Jørgen; Moline, Mark A; Sørensen, Asgeir J; Last, Kim; Falk-Petersen, Stig; Renaud, Paul E; Leu, Eva S; Grenvald, Julie; Cottier, Finlo; Cronin, Heather; Menze, Sebastian; Norgren, Petter; Varpe, Øystein; Daase, Malin; Darnis, Gerald; Johnsen, Geir</p> <p>2015-01-01</p> <p>The light regime is an ecologically important factor in pelagic habitats, influencing a range of biological processes. However, the availability and importance of light to these processes in high Arctic <span class="hlt">zooplankton</span> communities during periods of 'complete' darkness (polar night) are poorly studied. Here we characterized the ambient light regime throughout the diel cycle during the high Arctic polar night, and ask whether visual systems of Arctic <span class="hlt">zooplankton</span> can detect the low levels of irradiance available at this time. To this end, light measurements with a purpose-built irradiance sensor and coupled all-sky digital photographs were used to characterize diel skylight irradiance patterns over 24 hours at 79°N in January 2014 and 2015. Subsequent skylight spectral irradiance and in-water optical property measurements were used to model the underwater light field as a function of depth, which was then weighted by the electrophysiologically determined visual spectral sensitivity of a dominant high Arctic zooplankter, Thysanoessa inermis. Irradiance in air ranged between 1-1.5 x 10-5 μmol photons m-2 s-1 (400-700 nm) in clear weather conditions at noon and with the moon below the horizon, hence values reflect only solar illumination. Radiative transfer modelling generated underwater light fields with peak transmission at blue-green wavelengths, with a 465 nm transmission maximum in shallow water shifting to 485 nm with depth. To the eye of a zooplankter, light from the surface to 75 m exhibits a maximum at 485 nm, with longer wavelengths (>600 nm) being of little visual significance. Our data are the first quantitative characterisation, including absolute intensities, spectral composition and photoperiod of biologically relevant solar ambient light in the high Arctic during the polar night, and indicate that some species of Arctic <span class="hlt">zooplankton</span> are able to detect and utilize ambient light down to 20-30m depth during the Arctic polar night.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24360334','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24360334"><span>Annual variation in neustonic micro- and meso-plastic particles and <span class="hlt">zooplankton</span> in the Bay of Calvi (Mediterranean-Corsica).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Collignon, Amandine; Hecq, Jean-Henri; Galgani, François; Collard, France; Goffart, Anne</p> <p>2014-02-15</p> <p>The annual variation in neustonic plastic particles and <span class="hlt">zooplankton</span> was studied in the Bay of Calvi (Corsica) between 30 August 2011 and 7 August 2012. Plastic particles were classified into three size classes, small microplastics (0.2-2mm), large microplastics (2-5mm) and mesoplastics (5-10mm). 74% of the 38 samples contained plastic particles of varying composition: e.g. filaments, polystyrene, thin plastic films. An average concentration of 6.2 particles/100 m(2) was observed. The highest abundance values (69 particles/100 m(2)) observed occurred during periods of low offshore wind conditions. These values rose in the same order of magnitude as in previous studies in the North Western Mediterranean. The relationships between the abundance values of the size classes between <span class="hlt">zooplankton</span> and plastic particles were then examined. The ratio for the intermediate size class (2-5mm) reached 2.73. This would suggest a potential confusion for predators regarding planktonic prey of this size class. Copyright © 2013 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008JMS....71..316C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008JMS....71..316C"><span>Dynamics of suprabenthos-<span class="hlt">zooplankton</span> communities around the Balearic Islands (western Mediterranean): Influence of environmental variables and effects on the biological cycle of Aristeus antennatus</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cartes, J. E.; Madurell, T.; Fanelli, E.; López-Jurado, J. L.</p> <p></p> <p>Dynamics of suprabenthos and <span class="hlt">zooplankton</span> were analyzed in two areas located in the NW (off Sóller harbour) and S (off Cabrera Archipelago) of Mallorca (Balearic Islands, western Mediterranean) at depths ranging between 135-780 m. Four stations situated respectively at 150 m (shelf-slope break), and at bathyal depths of 350, 650 and 750 m were sampled at bi-monthly intervals during six cruises performed between August 2003 and June 2004. Suprabenthos showed maximum biomass in both areas from late spring to summer (April to August), while minimum biomass was found in autumn (September-November). Though variable, temporal dynamics of <span class="hlt">zooplankton</span> showed peaks of biomass in late winter and summer (February and June), while minimals occurred in autumn (August-September) and, at bathyal depths, in April. Suprabenthos (abundance; MDS analyses) showed a sample aggregation as a function of depth (3 groups corresponding to the shelf-slope break, upper slope — over 350 m; and the middle, deeper part of the slope — over 650-750 m), without any separation of hauls by season. By contrast, <span class="hlt">zooplankton</span> samples were separated by season and not by depth. There was evidence of three seasonal groups corresponding to summer (June 2004-August 2003), autumn-winter (September and November 2003, February 2004), and spring (April 2004), being especially well established off Sóller. In general, suprabenthos was significantly correlated with the sediment variables (e.g. total organic matter content (% OM), potential REDOX), whereas <span class="hlt">zooplankton</span> was almost exclusively dependent on Chl a at the surface, which suggests two different food sources for suprabenthos and <span class="hlt">zooplankton</span>. The increase of suprabenthos abundance in April-June was paralleled by a sharp increase ( ca. 2.8 times) in the %OM on sediment during the same period, coupled ca. 1-2 months of delay with the peak of surface Chl a recorded in February-March (from satellite imagery data). Suprabenthos biomass was also correlated with</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1996GeCoA..60.2265H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1996GeCoA..60.2265H"><span>Steryl chlorin esters are formed by <span class="hlt">zooplankton</span> herbivory</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Harradine, Paul J.; Harris, Philip G.; Head, Robert N.; Harris, Roger P.; Maxwell, James R.</p> <p>1996-06-01</p> <p>Steryl chlorin esters (SCEs) were formed in laboratory feeding experiments when starved females of the copepod Calanus helgolandicus were allowed to graze on a culture of the diatom Thalassiosira weissflogii. They were found when the <span class="hlt">zooplankton</span> had grazed for 48 hours and were also identified in fecal pellets subsequently left in seawater in the dark. The distribution contained the diatom sterols in approximately the same relative abundance as the free sterols in the substrate, as well as the most abundant copepod sterol, all esterified to the chlorophyll a degradation product, pyropheophorbide a. Hence, in studies aimed at using sedimentary SCE sterol distributions as indicators of phytoplankton community structure, cholesterol should not be considered since the cholesteryl ester of pyropheophorbide a was a significant component in the fecal pellet SCEs. The findings represent a step forward in unravelling the transformations undergone by chlorophyll a in aquatic environments, since the abundance and wide occurrence of sedimentary SCEs indicate that they are a significant preservational sink for the chlorophyll a biosynthesised in the photic zone.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26490249','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26490249"><span>Characterization of intermittency in <span class="hlt">zooplankton</span> behaviour in turbulence.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Michalec, François-Gaël; Schmitt, François G; Souissi, Sami; Holzner, Markus</p> <p>2015-10-01</p> <p>We consider Lagrangian velocity differences of zooplankters swimming in still water and in turbulence. Using cumulants, we quantify the intermittency properties of their motion recorded using three-dimensional particle tracking velocimetry. Copepods swimming in still water display an intermittent behaviour characterized by a high probability of small velocity increments, and by stretched exponential tails. Low values arise from their steady cruising behaviour while heavy tails result from frequent relocation jumps. In turbulence, we show that at short time scales, the intermittency signature of active copepods clearly differs from that of the underlying flow, and reflects the frequent relocation jumps displayed by these small animals. Despite these differences, we show that copepods swimming in still and turbulent flow belong to the same intermittency class that can be modelled by a log-stable model with non-analytical cumulant generating function. Intermittency in swimming behaviour and relocation jumps may enable copepods to display oriented, collective motion under strong hydrodynamic conditions and thus, may contribute to the formation of <span class="hlt">zooplankton</span> patches in energetic environments.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16018461','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16018461"><span>Comparison of multifrequency acoustic and in situ measurements of <span class="hlt">zooplankton</span> abundances in Knight Inlet, British Columbia.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Trevorrow, Mark V; Mackas, David L; Benfield, Mark C</p> <p>2005-06-01</p> <p>An investigation of midwater <span class="hlt">zooplankton</span> aggregations in a coastal fjord was conducted in November 2002. This study focused on quantitative comparisons between a calibrated, three-frequency (38, 120, and 200 kHz) vessel-based echo-sounder, a multinet towed <span class="hlt">zooplankton</span> sampler (BIONESS), and a high-resolution underwater camera (ZOOVIS). Daytime layers of euphausiids and amphipods near 70-90-m depth were observed in lower parts of the inlet, especially concentrated by tidal flows around a sill. Quantitative backscatter measurements of euphausiids and amphipods, combined with in situ size and abundance estimates, and using an assumed tilt-angle distribution, were in agreement with averaged fluid-cylinder scattering models produced by Stanton and Chu [ICES J. Mar. Sci. 57, 793-807, (2000)]. Acoustic measurements of physonect siphonophores in the upper inlet were found to have a strong 38-kHz scattering strength, in agreement with a damped bubble scattering model using a diameter of 0.4 mm. In relatively dense euphausiid layers, ZOOVIS abundance estimates were found to be a factor of 2 to 4 higher than the acoustic estimates, potentially due to deviations from assumed euphausiid orientation. Nocturnal near-surface euphausiid scattering exhibited a strong (15 dB) and rapid (seconds) sensitivity to vessel lights, interpreted as due to changing animal orientation.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005ASAJ..117.3574T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005ASAJ..117.3574T"><span>Comparison of multifrequency acoustic and in situ measurements of <span class="hlt">zooplankton</span> abundances in Knight Inlet, British Columbia</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Trevorrow, Mark V.; Mackas, David L.; Benfield, Mark C.</p> <p>2005-06-01</p> <p>An investigation of midwater <span class="hlt">zooplankton</span> aggregations in a coastal fjord was conducted in November 2002. This study focused on quantitative comparisons between a calibrated, three-frequency (38, 120, and 200 kHz) vessel-based echo-sounder, a multinet towed <span class="hlt">zooplankton</span> sampler (BIONESS), and a high-resolution underwater camera (ZOOVIS). Daytime layers of euphausiids and amphipods near 70-90-m depth were observed in lower parts of the inlet, especially concentrated by tidal flows around a sill. Quantitative backscatter measurements of euphausiids and amphipods, combined with in situ size and abundance estimates, and using an assumed tilt-angle distribution, were in agreement with averaged fluid-cylinder scattering models produced by Stanton and Chu [ICES J. Mar. Sci. 57, 793-807, (2000)]. Acoustic measurements of physonect siphonophores in the upper inlet were found to have a strong 38-kHz scattering strength, in agreement with a damped bubble scattering model using a diameter of 0.4 mm. In relatively dense euphausiid layers, ZOOVIS abundance estimates were found to be a factor of 2 to 4 higher than the acoustic estimates, potentially due to deviations from assumed euphausiid orientation. Nocturnal near-surface euphausiid scattering exhibited a strong (15 dB) and rapid (seconds) sensitivity to vessel lights, interpreted as due to changing animal orientation. .</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005DSRII..52..217C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005DSRII..52..217C"><span>Seasonal cross-shelf distribution of major <span class="hlt">zooplankton</span> taxa on the northern Gulf of Alaska shelf relative to water mass properties, species depth preferences and vertical migration behavior</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Coyle, Kenneth O.; Pinchuk, Alexei I.</p> <p>2005-01-01</p> <p>The cross-shelf distribution of major <span class="hlt">zooplankton</span> species was examined on the northern Gulf of Alaska (GOA) shelf during the production season for four years, between October 1997 and October 2001. The <span class="hlt">zooplankton</span> community on the northern GOA shelf consisted of oceanic and neritic species of the North Pacific subarctic species complex. Cross-shelf distribution of the major <span class="hlt">zooplankton</span> species was influenced by their depth preferences, vertical migration behavior, salinity-temperature preferences, and by cross-shelf water-mass distribution and movement. The neritic community, dominated by Pseudocalanus spp., Metridia pacifica and Calanus marshallae, had highest abundances on the inner shelf, in the Alaska Coastal Current, and in the adjacent fjords in late spring and early summer. The oceanic community, which contained primarily Neocalanus cristatus and Eucalanus bungii, was observed in the Alaskan Stream and adjacent waters near the shelf break. A mid-shelf transition zone contained a mixture of oceanic and neritic species. Prince William Sound (PWS) contained a unique species complex of large mesopelagic copepods, amphipods and shrimp. Neocalanus flemingeri and Oithona similis were abundant in all four regions during spring and early summer. The transition zone commonly crossed much of the shelf between the shelf break and the ACC, but satellite images and CTD data indicate that occasionally a narrow shelf-break front can form, in which case distinct <span class="hlt">zooplankton</span> species groups are observed on either side of the front. Satellite data also revealed numerous large and small eddies, which probably contribute to cross-shelf mixing in the transition zone.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5390085','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5390085"><span>Mechanisms shaping size structure and functional <span class="hlt">diversity</span> of phytoplankton communities in the ocean</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Acevedo-Trejos, Esteban; Brandt, Gunnar; Bruggeman, Jorn; Merico, Agostino</p> <p>2015-01-01</p> <p>The factors regulating phytoplankton community composition play a crucial role in structuring aquatic food webs. However, consensus is still lacking about the mechanisms underlying the observed biogeographical differences in cell size composition of phytoplankton communities. Here we use a trait-based model to disentangle these mechanisms in two contrasting regions of the Atlantic Ocean. In our model, the phytoplankton community can self-assemble based on a trade-off emerging from relationships between cell size and (1) nutrient uptake, (2) <span class="hlt">zooplankton</span> grazing, and (3) phytoplankton sinking. Grazing ‘pushes’ the community towards larger cell sizes, whereas nutrient uptake and sinking ‘pull’ the community towards smaller cell sizes. We find that the stable environmental conditions of the tropics strongly balance these forces leading to persistently small cell sizes and reduced size <span class="hlt">diversity</span>. In contrast, the seasonality of the temperate region causes the community to regularly reorganize via shifts in species composition and to exhibit, on average, bigger cell sizes and higher size <span class="hlt">diversity</span> than in the tropics. Our results raise the importance of environmental variability as a key structuring mechanism of plankton communities in the ocean and call for a reassessment of the current understanding of phytoplankton <span class="hlt">diversity</span> patterns across latitudinal gradients. PMID:25747280</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA574182','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA574182"><span>Planar Laser Imaging of Scattering and Fluorescence of <span class="hlt">Zooplankton</span> Feeding in Layers of Phytoplankton in situ</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2007-09-30</p> <p>Planar Laser Imaging of Scattering and Fluorescence of <span class="hlt">Zooplankton</span> Feeding in Layers of Phytoplankton in situ Peter J.S. Franks Scripps...herbivorous copepod feeding in the laboratory, and 2) to apply these methods in the field to observe the dynamics of copepod feeding in situ. In...particular we intend to test the “ feeding sorties” hypothesis vs. the “in situ feeding ” hypothesis regarding the location and timing of copepod feeding</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3229115','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3229115"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of common beans based on molecular markers</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Gill-Langarica, Homar R.; Muruaga-Martínez, José S.; Vargas-Vázquez, M.L. Patricia; Rosales-Serna, Rigoberto; Mayek-Pérez, Netzahualcoyotl</p> <p>2011-01-01</p> <p>A core collection of the common bean (Phaseolus vulgaris L.), representing genetic <span class="hlt">diversity</span> in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic <span class="hlt">diversity</span>, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP <span class="hlt">analysis</span> produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic <span class="hlt">diversity</span> was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of <span class="hlt">diversity</span> in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR <span class="hlt">analysis</span> indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic <span class="hlt">diversity</span> observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation. PMID:22215964</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_19 --> <div id="page_20" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="381"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22215964','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22215964"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of common beans based on molecular markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Gill-Langarica, Homar R; Muruaga-Martínez, José S; Vargas-Vázquez, M L Patricia; Rosales-Serna, Rigoberto; Mayek-Pérez, Netzahualcoyotl</p> <p>2011-10-01</p> <p>A core collection of the common bean (Phaseolus vulgaris L.), representing genetic <span class="hlt">diversity</span> in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic <span class="hlt">diversity</span>, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP <span class="hlt">analysis</span> produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic <span class="hlt">diversity</span> was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of <span class="hlt">diversity</span> in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR <span class="hlt">analysis</span> indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic <span class="hlt">diversity</span> observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70041897','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70041897"><span>Comparing seasonal dynamics of the Lake Huron <span class="hlt">zooplankton</span> community between 1983-1984 and 2007 and revisiting the impact of Bythotrephes planktivory</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Bunnell, David B.; Keeler, Kevin M.; Puchala, Elizabeth A.; Davis, Bruce M.; Pothoven, Steven A.</p> <p>2012-01-01</p> <p><span class="hlt">Zooplankton</span> community composition can be influenced by lake productivity as well as planktivory by fish or invertebrates. Previous analyses based on long-term Lake Huron <span class="hlt">zooplankton</span> data from August reported a shift in community composition between the 1980s and 2000s: proportional biomass of calanoid copepods increased while that of cyclopoid copepods and herbivorous cladocerans decreased. Herein, we used seasonally collected data from Lake Huron in 1983–1984 and 2007 and reported similar shifts in proportional biomass. We also used a series of generalized additive models to explore differences in seasonal abundance by species and found that all three cyclopoid copepod species (Diacyclops thomasi, Mesocylops edax, Tropocyclops prasinus mexicanus) exhibited higher abundance in 1983–1984 than in 2007. Surprisingly, only one (Epischura lacustris) of seven calanoid species exhibited higher abundance in 2007. The results for cladocerans were also mixed with Bosmina spp. exhibiting higher abundance in 1983–1984, while Daphnia galeata mendotae reached a higher level of abundance in 2007. We used a subset of the 2007 data to estimate not only the vertical distribution of Bythotrephes longimanus and their prey, but also the consumption by Bythotrephes in the top 20 m of water. This epilimnetic layer was dominated by copepod copepodites and nauplii, and consumption either exceeded (Hammond Bay site) or equaled 65% (Detour site) of epilimnetic <span class="hlt">zooplankton</span> production. The lack of spatial overlap between Bythotrephes and herbivorous cladocerans and cyclopoid copepod prey casts doubt on the hypothesis that Bythotrephes planktivory was the primary driver underlying the community composition changes in the 2000s.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3421787','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3421787"><span>Comparison of a High-Resolution Melting Assay to Next-Generation Sequencing for <span class="hlt">Analysis</span> of HIV <span class="hlt">Diversity</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Cousins, Matthew M.; Ou, San-San; Wawer, Maria J.; Munshaw, Supriya; Swan, David; Magaret, Craig A.; Mullis, Caroline E.; Serwadda, David; Porcella, Stephen F.; Gray, Ronald H.; Quinn, Thomas C.; Donnell, Deborah; Eshleman, Susan H.</p> <p>2012-01-01</p> <p>Next-generation sequencing (NGS) has recently been used for <span class="hlt">analysis</span> of HIV <span class="hlt">diversity</span>, but this method is labor-intensive, costly, and requires complex protocols for data <span class="hlt">analysis</span>. We compared <span class="hlt">diversity</span> measures obtained using NGS data to those obtained using a <span class="hlt">diversity</span> assay based on high-resolution melting (HRM) of DNA duplexes. The HRM <span class="hlt">diversity</span> assay provides a single numeric score that reflects the level of <span class="hlt">diversity</span> in the region analyzed. HIV gag and env from individuals in Rakai, Uganda, were analyzed in a previous study using NGS (n = 220 samples from 110 individuals). Three sequence-based <span class="hlt">diversity</span> measures were calculated from the NGS sequence data (percent <span class="hlt">diversity</span>, percent complexity, and Shannon entropy). The amplicon pools used for NGS were analyzed with the HRM <span class="hlt">diversity</span> assay. HRM scores were significantly associated with sequence-based measures of HIV <span class="hlt">diversity</span> for both gag and env (P < 0.001 for all measures). The level of <span class="hlt">diversity</span> measured by the HRM <span class="hlt">diversity</span> assay and NGS increased over time in both regions analyzed (P < 0.001 for all measures except for percent complexity in gag), and similar amounts of diversification were observed with both methods (P < 0.001 for all measures except for percent complexity in gag). <span class="hlt">Diversity</span> measures obtained using the HRM <span class="hlt">diversity</span> assay were significantly associated with those from NGS, and similar increases in <span class="hlt">diversity</span> over time were detected by both methods. The HRM <span class="hlt">diversity</span> assay is faster and less expensive than NGS, facilitating rapid <span class="hlt">analysis</span> of large studies of HIV <span class="hlt">diversity</span> and evolution. PMID:22785188</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/17506490','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/17506490"><span>Worldwide <span class="hlt">analysis</span> of multiple microsatellites: language <span class="hlt">diversity</span> has a detectable influence on DNA <span class="hlt">diversity</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Belle, Elise M S; Barbujani, Guido</p> <p>2007-08-01</p> <p>Previous studies of the correlations between the languages spoken by human populations and the genes carried by the members of those populations have been limited by the small amount of genetic markers available and by approximations in the treatment of linguistic data. In this study we analyzed a large collection of polymorphic microsatellite loci (377), distributed on all autosomes, and used Ruhlen's linguistic classification, to investigate the relative roles of geography and language in shaping the distribution of human DNA <span class="hlt">diversity</span> at a worldwide scale. For this purpose, we performed three different kinds of <span class="hlt">analysis</span>: (i) we partitioned genetic variances at three hierarchical levels of population subdivision according to language group by means of a molecular <span class="hlt">analysis</span> of variance (AMOVA); (ii) we quantified by a series of Mantel's tests the correlation between measures of genetic and linguistic differentiation; and (iii) we tested whether linguistic differences are increased across known zones of increased genetic change between populations. Genetic differences appear to more closely reflect geographic than linguistic differentiation. However, our analyses show that language differences also have a detectable effect on DNA <span class="hlt">diversity</span> at the genomic level, above and beyond the effects of geographic distance. (c) 2007 Wiley-Liss, Inc.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRI..129...32B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRI..129...32B"><span>Variation in <span class="hlt">zooplankton</span> prey distribution determines marine foraging distributions of breeding Cassin's Auklet</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bertram, Douglas F.; Mackas, David L.; Welch, David W.; Boyd, W. Sean; Ryder, John L.; Galbraith, Moira; Hedd, April; Morgan, Ken; O'Hara, Patrick D.</p> <p>2017-11-01</p> <p>To investigate the causal basis for patterns of seabird foraging distributions during breeding we integrated data from ship-board seabird and <span class="hlt">zooplankton</span> surveys, aerial radio telemetry, and colony-based research programs. We examined the marine distributions of Cassin's Auklet (Ptychoramphus aleuticus) breeding on Triangle Island, in the Northeast Pacific off the coast of B.C., Canada using surveys conducted in 1999, 2000, and 2001. Concurrently, we sampled <span class="hlt">zooplankton</span> at 16 stations along a cross shelf transect in the vicinity of Triangle Island. In 1999 and 2000, when populations of the preferred copepod prey Neocalanus cristatus were available at deep-water stations (1000-2000 m), the majority of the auklets were concentrated SW of the colony 40-75 km offshore and parallel to, but 35 -50 km beyond the shelf break in deep water (1200-2000 m). Birds did not fly farther out to sea to where prey was five times more abundant when N. cristatus could be found at lower abundance levels, closer to the colony. In 2001, N. cristatus were virtually absent at the deep-water stations, likely as a result of massive salp (family Salpidae) aggregations which may have consumed and displaced the seabirds' preferred prey. We demonstrate that while birds were still able to locate and provision chicks with N. cristatus in 2001, they had to forage farther away from the colony in order to do so. Our telemetry results are generally consistent with analyses of at-sea distributions of Cassin's Auklets derived from ship-board surveys (1990-2010) both of which have contributed to the design of the proposed Scott Islands marine National Wildlife Area, the first of its kind in Canada.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/17614513','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/17614513"><span>Density and sound speed of two gelatinous <span class="hlt">zooplankton</span>: ctenophore (Mnemiopsis leidyi) and lion's mane jellyfish (Cyanea capillata).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Warren, Joseph D; Smith, Joy N</p> <p>2007-07-01</p> <p>The density and sound speed of two coastal, gelatinous <span class="hlt">zooplankton</span>, Mnemiopsis leidyi (a ctenophore) and Cyanea capillata (lion's mane jellyfish), were measured. These parameters are important inputs to acoustic scattering models. Two different methods were used to measure the density of individual animals: one used a balance and graduated cylinder to determine the mass and displacement volume of the animal, the other varied the density of the solution the animal was immersed in. When the same animal was measured using both methods, density values were within 1% of each other. A travel-time difference method was used to measure the sound speed within the animals. The densities of both <span class="hlt">zooplankton</span> slightly decreased as the animals increased in length, mass, and volume. The ratio of animal density and sound speed to the surrounding seawater (g and h, respectively) are reported for both animals. For Mnemiopsis leidyi ranging in length from 1 to 5 cm, the mean value (+/-standard deviation) of g and h were 1.009 (+/-0.004) and 1.007 (+/-0.001). For Cyanea capillata ranging in bell diameter from 2 to 11 cm, the mean value (+/-standard deviation) of g and single value of h were 1.009 (+/-0.004) and 1.0004.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24028489','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24028489"><span>Zebra: a web server for bioinformatic <span class="hlt">analysis</span> of <span class="hlt">diverse</span> protein families.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Suplatov, Dmitry; Kirilin, Evgeny; Takhaveev, Vakil; Svedas, Vytas</p> <p>2014-01-01</p> <p>During evolution of proteins from a common ancestor, one functional property can be preserved while others can vary leading to functional <span class="hlt">diversity</span>. A systematic study of the corresponding adaptive mutations provides a key to one of the most challenging problems of modern structural biology - understanding the impact of amino acid substitutions on protein function. The subfamily-specific positions (SSPs) are conserved within functional subfamilies but are different between them and, therefore, seem to be responsible for functional <span class="hlt">diversity</span> in protein superfamilies. Consequently, a corresponding method to perform the bioinformatic <span class="hlt">analysis</span> of sequence and structural data has to be implemented in the common laboratory practice to study the structure-function relationship in proteins and develop novel protein engineering strategies. This paper describes Zebra web server - a powerful remote platform that implements a novel bioinformatic <span class="hlt">analysis</span> algorithm to study <span class="hlt">diverse</span> protein families. It is the first application that provides specificity determinants at different levels of functional classification, therefore addressing complex functional <span class="hlt">diversity</span> of large superfamilies. Statistical <span class="hlt">analysis</span> is implemented to automatically select a set of highly significant SSPs to be used as hotspots for directed evolution or rational design experiments and analyzed studying the structure-function relationship. Zebra results are provided in two ways - (1) as a single all-in-one parsable text file and (2) as PyMol sessions with structural representation of SSPs. Zebra web server is available at http://biokinet.belozersky.msu.ru/zebra .</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24502158','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24502158"><span>Relation between physico-chemical limnology and crustacean community in Wular Lake of Kashmir Himalaya.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Shah, Javaid Ahmad; Pandit, Ashok K</p> <p>2013-10-01</p> <p>The present study scrutinizes the seasonal variation in the distribution of crustacean <span class="hlt">zooplankton</span> in relation to physico-chemical liminology of Wular lake. Water samples were collected from five study sites during September 2010-August 2011. Remarkable spatial and temporal variations were observed among the different study sites. Among the parameters recorded water temperature showed positive correlation with pH (p<0.01) and orthophosphate (p<0.05).Transparency showed a significant negative correlation with total alkalinity (p<0.01), free carbon dioxide (p<0.01) and ammonical nitrogen (p<0.01). Crustacean <span class="hlt">zooplankton</span> were collected by filtering 100 L lake water through a 30 microm nytal mesh and preserved in 4% formalin. A total of 42 taxa of crustacean were recorded, among them 23 species belonged to Cladocera, 16 to Copepoda and only 3 to Ostracoda. Species <span class="hlt">diversity</span> and density depicted an abrupt up surge on the advent of warmer period (extending from March). Among the various sites a maximum of 40 species were recorded from a single biotope (site III) against the minimum of only 17 species being recorded from site I. Bray-Curtis cluster <span class="hlt">analysis</span> showed close similarity (0.928-0.944%) between summer and autumn in terms of species <span class="hlt">diversity</span>. Pearson correlation coefficient of the various physico-chemical parameters of water with crustacean <span class="hlt">zooplankton</span> depicted that not only a single but multiple factors govern over the distribution and <span class="hlt">diversity</span> of crustacean in the lake.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4454649','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4454649"><span>Is Ambient Light during the High Arctic Polar Night Sufficient to Act as a Visual Cue for <span class="hlt">Zooplankton</span>?</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Cohen, Jonathan H.; Berge, Jørgen; Moline, Mark A.; Sørensen, Asgeir J.; Last, Kim; Falk-Petersen, Stig; Renaud, Paul E.; Leu, Eva S.; Grenvald, Julie; Cottier, Finlo; Cronin, Heather; Menze, Sebastian; Norgren, Petter; Varpe, Øystein; Daase, Malin; Darnis, Gerald; Johnsen, Geir</p> <p>2015-01-01</p> <p>The light regime is an ecologically important factor in pelagic habitats, influencing a range of biological processes. However, the availability and importance of light to these processes in high Arctic <span class="hlt">zooplankton</span> communities during periods of 'complete' darkness (polar night) are poorly studied. Here we characterized the ambient light regime throughout the diel cycle during the high Arctic polar night, and ask whether visual systems of Arctic <span class="hlt">zooplankton</span> can detect the low levels of irradiance available at this time. To this end, light measurements with a purpose-built irradiance sensor and coupled all-sky digital photographs were used to characterize diel skylight irradiance patterns over 24 hours at 79°N in January 2014 and 2015. Subsequent skylight spectral irradiance and in-water optical property measurements were used to model the underwater light field as a function of depth, which was then weighted by the electrophysiologically determined visual spectral sensitivity of a dominant high Arctic zooplankter, Thysanoessa inermis. Irradiance in air ranged between 1–1.5 x 10-5 μmol photons m-2 s-1 (400–700 nm) in clear weather conditions at noon and with the moon below the horizon, hence values reflect only solar illumination. Radiative transfer modelling generated underwater light fields with peak transmission at blue-green wavelengths, with a 465 nm transmission maximum in shallow water shifting to 485 nm with depth. To the eye of a zooplankter, light from the surface to 75 m exhibits a maximum at 485 nm, with longer wavelengths (>600 nm) being of little visual significance. Our data are the first quantitative characterisation, including absolute intensities, spectral composition and photoperiod of biologically relevant solar ambient light in the high Arctic during the polar night, and indicate that some species of Arctic <span class="hlt">zooplankton</span> are able to detect and utilize ambient light down to 20–30m depth during the Arctic polar night. PMID:26039111</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29182674','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29182674"><span>Genome-wide <span class="hlt">analysis</span> of the <span class="hlt">diversity</span> and ancestry of Korean dogs.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Choi, Bong Hwan; Wijayananda, Hasini I; Lee, Soo Hyun; Lee, Doo Ho; Kim, Jong Seok; Oh, Seok Il; Park, Eung Woo; Lee, Cheul Koo; Lee, Seung Hwan</p> <p>2017-01-01</p> <p>There are various hypotheses on dog domestication based on archeological and genetic studies. Although many studies have been conducted on the origin of dogs, the existing literature about the ancestry, <span class="hlt">diversity</span>, and population structure of Korean dogs is sparse. Therefore, this study is focused on the origin, <span class="hlt">diversity</span> and population structure of Korean dogs. The study sample comprised four major categories, including non-dogs (coyotes and wolves), ancient, modern and Korean dogs. Selected samples were genotyped using an Illumina CanineHD array containing 173,662 single nucleotide polymorphisms. The genome-wide data were filtered using quality control parameters in PLINK 1.9. Only autosomal chromosomes were used for further <span class="hlt">analysis</span>. The negative off-diagonal variance of the genetic relationship matrix <span class="hlt">analysis</span> depicted, the variability of samples in each population. FIS (inbreeding rate within a population) values indicated, a low level of inbreeding within populations, and the patterns were in concordance with the results of Nei's genetic distance <span class="hlt">analysis</span>. The lowest FST (inbreeding rate between populations) values among Korean and Chinese breeds, using a phylogenetic tree, multi-dimensional scaling, and a TreeMix likelihood tree showed Korean breeds are highly related to Chinese breeds. The Korean breeds possessed a unique and large <span class="hlt">diversity</span> of admixtures compared with other breeds. The highest and lowest effective population sizes were observed in Korean Jindo Black (485) and Korean Donggyeong White (109), respectively. The historical effective population size of all Korean dogs showed declining trend from the past to present. It is important to take immediate action to protect the Korean dog population while conserving their <span class="hlt">diversity</span>. Furthermore, this study suggests that Korean dogs have unique <span class="hlt">diversity</span> and are one of the basal lineages of East Asian dogs, originating from China.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5705110','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5705110"><span>Genome-wide <span class="hlt">analysis</span> of the <span class="hlt">diversity</span> and ancestry of Korean dogs</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Lee, Doo Ho; Kim, Jong Seok; Oh, Seok Il; Park, Eung Woo; Lee, Cheul Koo; Lee, Seung Hwan</p> <p>2017-01-01</p> <p>There are various hypotheses on dog domestication based on archeological and genetic studies. Although many studies have been conducted on the origin of dogs, the existing literature about the ancestry, <span class="hlt">diversity</span>, and population structure of Korean dogs is sparse. Therefore, this study is focused on the origin, <span class="hlt">diversity</span> and population structure of Korean dogs. The study sample comprised four major categories, including non-dogs (coyotes and wolves), ancient, modern and Korean dogs. Selected samples were genotyped using an Illumina CanineHD array containing 173,662 single nucleotide polymorphisms. The genome-wide data were filtered using quality control parameters in PLINK 1.9. Only autosomal chromosomes were used for further <span class="hlt">analysis</span>. The negative off-diagonal variance of the genetic relationship matrix <span class="hlt">analysis</span> depicted, the variability of samples in each population. FIS (inbreeding rate within a population) values indicated, a low level of inbreeding within populations, and the patterns were in concordance with the results of Nei’s genetic distance <span class="hlt">analysis</span>. The lowest FST (inbreeding rate between populations) values among Korean and Chinese breeds, using a phylogenetic tree, multi-dimensional scaling, and a TreeMix likelihood tree showed Korean breeds are highly related to Chinese breeds. The Korean breeds possessed a unique and large <span class="hlt">diversity</span> of admixtures compared with other breeds. The highest and lowest effective population sizes were observed in Korean Jindo Black (485) and Korean Donggyeong White (109), respectively. The historical effective population size of all Korean dogs showed declining trend from the past to present. It is important to take immediate action to protect the Korean dog population while conserving their <span class="hlt">diversity</span>. Furthermore, this study suggests that Korean dogs have unique <span class="hlt">diversity</span> and are one of the basal lineages of East Asian dogs, originating from China. PMID:29182674</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26662394','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26662394"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of fruit characteristics of hawthorn germplasm.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Su, K; Guo, Y S; Wang, G; Zhao, Y H; Dong, W X</p> <p>2015-12-07</p> <p>One hundred and six accessions of hawthorn intraspecific resources, from the National Germplasm Repository at Shenyang, were subjected to genetic <span class="hlt">diversity</span> and principal component <span class="hlt">analysis</span> based on evaluation data of 15 fruit traits. Results showed that the genetic <span class="hlt">diversity</span> of hawthorn fruit traits varied. Among the 15 traits, the fruit shape variable coefficient had the most obvious evaluation, followed by fruit surface state, dot color, taste, weight of single fruit, sepal posture, peduncle form, and metula traits. These are the primary traits by which hawthorn could be classified in the future. The principal component demonstrated that these traits are the most influential factors of hawthorn fruit characteristics.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25771222','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25771222"><span>210Po and 210Pb trophic transfer within the phytoplankton-<span class="hlt">zooplankton</span>-anchovy/sardine food web: a case study from the Gulf of Lion (NW Mediterranean Sea).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Strady, Emilie; Harmelin-Vivien, Mireille; Chiffoleau, Jean François; Veron, Alain; Tronczynski, Jacek; Radakovitch, Olivier</p> <p>2015-05-01</p> <p>The transfer of (210)Po and (210)Pb in the food web of small pelagic fishes (from phytoplankton and <span class="hlt">zooplankton</span> to anchovy Engraulis encrasicolus and sardine Sardina pilchardus) is investigated in the Gulf of Lion (GoL). We present original data of (210)Po and (210)Pb activity concentrations, C and N stable isotope ratios, measured (i) from different size classes of phytoplankton and <span class="hlt">zooplankton</span> during spring and winter in different environments of the GoL, and (ii) in two fish species. Significant spatial patterns based on (210)Po, (210)Pb activity concentrations and (210)Po/(210)Pb ratios in the different plankton size classes are evidenced by hierarchical clustering, both in spring and winter. This variability, also observed for C and N stable isotopes ratios, is connected to local specific pelagic habitats and hydrodynamics. The sampling strategy suggests that (210)Po bioaccumulation in the GoL remains at a constant level from the first (dominated by phytoplankton) to the second trophic level (<span class="hlt">zooplankton</span>), while (210)Pb bioaccumulation shows an increase in winter. Based on stable N isotope ratios and (210)Po activity concentrations measured in anchovies and sardines, we evidence (210)Po bio-magnification along the trophic food web of these two planktivorous pelagic fishes. Copyright © 2015 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010DSRII..57.2220S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010DSRII..57.2220S"><span><span class="hlt">Diversity</span> and community structure of pelagic fishes to 5000 m depth in the Sargasso Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sutton, Tracey T.; Wiebe, Peter H.; Madin, Laurence; Bucklin, Ann</p> <p>2010-12-01</p> <p>The <span class="hlt">diversity</span>, abundance and distribution of pelagic fishes from 0-5000 m in the Sargasso Sea, northwestern Atlantic Ocean, were investigated, with primary focus on fishes between 1000-5000 m. A large-volume, fine-mesh (335-μm), discrete-depth sampling system was used to sample the latter strata in 1000-m intervals. Species composition and total biomass of fishes collected in these strata were compared with samples taken 0-1000 m using a smaller midwater trawl. Samples were collected in association with the Census of Marine <span class="hlt">Zooplankton</span> at-sea DNA-sequencing effort, allowing the determination of genetic barcodes of taxa for which species descriptions do not currently exist (e.g., many male ceratioid anglerfishes). A total of 3965 fish specimens were collected, representing minimally 127 species (84 genera), from 42 families. The bristlemouth, Cyclothone braueri, dominated the catches both above (47%) and below (41%) 1000 m. The Myctophidae and Stomiidae were the most species-rich taxa, while the deep-sea anglerfish suborder Ceratioidei was the most <span class="hlt">diverse</span> bathypelagic taxon. Thirty species of fish were sequenced and data submitted to GenBank. New Ocean Biogeographic Information System location records for the Saragasso Sea were logged for 84 fish species. Hydrographic data revealed separation of the region into three physical regimes within the top 1000 m (northern, transition, and southern), while the sub-1000 m stratum was fairly homogeneous. Though species richness, abundance, and <span class="hlt">diversity</span> were highest in the southern Sargasso, <span class="hlt">diversity</span> indices of whole water column (0-5000 m) samples were not significantly different between regions. Below 1000 m, the 1000-2000 m stratum held the most <span class="hlt">diverse</span> assemblage across the entire transect, but high <span class="hlt">diversity</span> was exhibited below 3000 m at two of four stations. Ordination discriminated 13 pelagic fish assemblages, with these related to depth far more than region. Geometric abundance class <span class="hlt">analysis</span> revealed profound</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25150546','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25150546"><span>Cultural <span class="hlt">diversity</span>: blind spot in medical curriculum documents, a document <span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Paternotte, Emma; Fokkema, Joanne P I; van Loon, Karsten A; van Dulmen, Sandra; Scheele, Fedde</p> <p>2014-08-22</p> <p>Cultural <span class="hlt">diversity</span> among patients presents specific challenges to physicians. Therefore, cultural <span class="hlt">diversity</span> training is needed in medical education. In cases where strategic curriculum documents form the basis of medical training it is expected that the topic of cultural <span class="hlt">diversity</span> is included in these documents, especially if these have been recently updated. The aim of this study was to assess the current formal status of cultural <span class="hlt">diversity</span> training in the Netherlands, which is a multi-ethnic country with recently updated medical curriculum documents. In February and March 2013, a document <span class="hlt">analysis</span> was performed of strategic curriculum documents for undergraduate and postgraduate medical education in the Netherlands. All text phrases that referred to cultural <span class="hlt">diversity</span> were extracted from these documents. Subsequently, these phrases were sorted into objectives, training methods or evaluation tools to assess how they contributed to adequate curriculum design. Of a total of 52 documents, 33 documents contained phrases with information about cultural <span class="hlt">diversity</span> training. Cultural <span class="hlt">diversity</span> aspects were more prominently described in the curriculum documents for undergraduate education than in those for postgraduate education. The most specific information about cultural <span class="hlt">diversity</span> was found in the blueprint for undergraduate medical education. In the postgraduate curriculum documents, attention to cultural <span class="hlt">diversity</span> differed among specialties and was mainly superficial. Cultural <span class="hlt">diversity</span> is an underrepresented topic in the Dutch documents that form the basis for actual medical training, although the documents have been updated recently. Attention to the topic is thus unwarranted. This situation does not fit the demand of a multi-ethnic society for doctors with cultural <span class="hlt">diversity</span> competences. Multi-ethnic countries should be critical on the content of the bases for their medical educational curricula.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013DSRII..98..269C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013DSRII..98..269C"><span><span class="hlt">Zooplankton</span> and micronekton biovolume at the Mid-Atlantic Ridge and Charlie-Gibbs Fracture Zone estimated by multi-frequency acoustic survey</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cox, Martin J.; Letessier, Tom B.; Brierley, Andrew S.</p> <p>2013-12-01</p> <p>To examine the potential influence of the Mid-Atlantic Ridge and Charlie-Gibbs Fracture Zone on <span class="hlt">zooplankton</span> and micronekton biovolume in the upper 200 m of the water column, multi-frequency acoustic data (18, 38, 70, 120 and 200 kHz) were acquired at four study sites from the RRS James Cook using hull-mounted scientific echosounders. Multi-frequency inversion techniques were employed to classify each 20 m depth×500 m along-track region of the water column to a <span class="hlt">zooplankton</span> or micronekton acoustic scatterering class, such as copepod or euphausiid, and to estimate biovolume. We found a highly significant north-south (across fracture zone) difference in areal biovolume (p-value=0.01) but no significant east-west (across ridge) difference (p-value=0.07). Areal biovolume at all sites was dominated by the acoustic scatter class ‘euphausiid’, with higher biovolumes occurring in the southern stations. Our acoustic observations suggest the existence of different pelagic communities to the north and south of the SPF, with the southern community having a greater proportion of fish.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018E%26ES..121e2091X','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018E%26ES..121e2091X"><span><span class="hlt">Analysis</span> of the ecological water <span class="hlt">diversion</span> project in Wenzhou City</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Xu, Haibo; Fu, Lei; Lin, Tong</p> <p>2018-02-01</p> <p>As a developed city in China, Wenzhou City has been suffered from bad water quality for years. In order to improve the river network water quality, an ecological water <span class="hlt">diversion</span> project was designed and executed by the regional government. In this study, an investigation and <span class="hlt">analysis</span> of the regional ecological water <span class="hlt">diversion</span> project is made for the purpose of examining the water quality improvements. A numerical model is also established, different water <span class="hlt">diversion</span> flow rates and sewer interception levels are considered during the simulation. Simulation results reveal that higher flow rate and sewer interception level will greatly improve the river network water quality in Wenzhou City. The importance of the flow rate and interception level has been proved and future work will be focused on increasing the flow rate and upgrading the sewer interception level.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28188321','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28188321"><span>Is Aluminum Innocuous to <span class="hlt">Zooplankton</span> at pH Below 6?</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>García-García, G; Jiménez-Contreras, J; Vargas-Hernández, A A; Nandini, S; Sarma, S S S</p> <p>2017-04-01</p> <p>Aluminum (Al) use has increased greatly during the last two decades, yet little information is available on its toxic effects in relation to pH particularly on <span class="hlt">zooplankton</span>. In this work, we determined the acute toxicity (LC 50 ) and life table responses for Moina micrura exposed to 0.008, 0.016 and 0.08 mg of Al L -1 at pH of 5, 6 and 7. The age-specific survivorship and reproduction showed a steep decline (80% mortality by the second day) at pH 5, independent of Al level. Both gross and net reproductive rates were significantly lower at pH 6 compared to pH 7, regardless of Al concentration. At pH 7 the rate of population increase of M. micrura was not significantly influenced by the Al level, while at pH 6 it was significantly lower (p < 0.05), suggesting that M. micrura is sensitive to changes in Al under slightly acidic conditions.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2003DSRII..50.2895A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2003DSRII..50.2895A"><span>A hybrid spectral representation of phytoplankton growth and <span class="hlt">zooplankton</span> response: The ''control rod'' model of plankton interaction</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Armstrong, Robert A.</p> <p>2003-11-01</p> <p>Phytoplankton species interact through competition for light and nutrients; they also interact through grazers they hold in common. Both interactions are expected to be size-dependent: smaller phytoplankton species will be at an advantage when nutrients are scarce due to surface/volume considerations, while species that are similar in size are more likely to be consumed by grazers held in common than are species that differ greatly in size. While phytoplankton competition for nutrients and light has been extensively characterized, size-based interaction through shared grazers has not been represented systematically. The latter situation is particularly unfortunate because small changes in community structure can give rise to large changes in ecosystem dynamics and, in inverse modeling, to large changes in estimated parameter values. A simple, systematic way to represent phytoplankton interaction through shared grazers, one resistant to unintended idiosyncrasy of model construction yet capable of representing scientifically justifiable idiosyncrasy, would aid greatly in the modeling process. Here I develop a model structure that allows systematic representation of plankton interaction. In this model, the <span class="hlt">zooplankton</span> community is represented as a continuous size spectrum, while phytoplankton species can be represented individually. The mechanistic basis of the model is a shift in the <span class="hlt">zooplankton</span> community from carnivory to omnivory to herbivory as phytoplankton density increases. I discuss two limiting approximations in some detail, and fit both to data from the IronEx II experiment. The first limiting case represents a community with no grazer-based interaction among phytoplankton species; this approximation illuminates the general structure of the model. In particular, the <span class="hlt">zooplankton</span> spectrum can be viewed as the analog of a control rod in a nuclear reactor, which prevents (or fails to prevent) an exponential bloom of phytoplankton. A second, more complex limiting</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018IJBC...2850042M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018IJBC...2850042M"><span>Bifurcation and Control in a Singular Phytoplankton-<span class="hlt">Zooplankton</span>-Fish Model with Nonlinear Fish Harvesting and Taxation</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Meng, Xin-You; Wu, Yu-Qian</p> <p></p> <p>In this paper, a delayed differential algebraic phytoplankton-<span class="hlt">zooplankton</span>-fish model with taxation and nonlinear fish harvesting is proposed. In the absence of time delay, the existence of singularity induced bifurcation is discussed by regarding economic interest as bifurcation parameter. A state feedback controller is designed to eliminate singularity induced bifurcation. Based on Liu’s criterion, Hopf bifurcation occurs at the interior equilibrium when taxation is taken as bifurcation parameter and is more than its corresponding critical value. In the presence of time delay, by analyzing the associated characteristic transcendental equation, the interior equilibrium loses local stability when time delay crosses its critical value. What’s more, the direction of Hopf bifurcation and stability of the bifurcating periodic solutions are investigated based on normal form theory and center manifold theorem, and nonlinear state feedback controller is designed to eliminate Hopf bifurcation. Furthermore, Pontryagin’s maximum principle has been used to obtain optimal tax policy to maximize the benefit as well as the conservation of the ecosystem. Finally, some numerical simulations are given to demonstrate our theoretical <span class="hlt">analysis</span>.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_20 --> <div id="page_21" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="401"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4236597','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4236597"><span>Cultural <span class="hlt">diversity</span>: blind spot in medical curriculum documents, a document <span class="hlt">analysis</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p></p> <p>2014-01-01</p> <p>Background Cultural <span class="hlt">diversity</span> among patients presents specific challenges to physicians. Therefore, cultural <span class="hlt">diversity</span> training is needed in medical education. In cases where strategic curriculum documents form the basis of medical training it is expected that the topic of cultural <span class="hlt">diversity</span> is included in these documents, especially if these have been recently updated. The aim of this study was to assess the current formal status of cultural <span class="hlt">diversity</span> training in the Netherlands, which is a multi-ethnic country with recently updated medical curriculum documents. Methods In February and March 2013, a document <span class="hlt">analysis</span> was performed of strategic curriculum documents for undergraduate and postgraduate medical education in the Netherlands. All text phrases that referred to cultural <span class="hlt">diversity</span> were extracted from these documents. Subsequently, these phrases were sorted into objectives, training methods or evaluation tools to assess how they contributed to adequate curriculum design. Results Of a total of 52 documents, 33 documents contained phrases with information about cultural <span class="hlt">diversity</span> training. Cultural <span class="hlt">diversity</span> aspects were more prominently described in the curriculum documents for undergraduate education than in those for postgraduate education. The most specific information about cultural <span class="hlt">diversity</span> was found in the blueprint for undergraduate medical education. In the postgraduate curriculum documents, attention to cultural <span class="hlt">diversity</span> differed among specialties and was mainly superficial. Conclusions Cultural <span class="hlt">diversity</span> is an underrepresented topic in the Dutch documents that form the basis for actual medical training, although the documents have been updated recently. Attention to the topic is thus unwarranted. This situation does not fit the demand of a multi-ethnic society for doctors with cultural <span class="hlt">diversity</span> competences. Multi-ethnic countries should be critical on the content of the bases for their medical educational curricula. PMID:25150546</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4232844','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4232844"><span>Error correction and <span class="hlt">diversity</span> <span class="hlt">analysis</span> of population mixtures determined by NGS</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Burroughs, Nigel J.; Evans, David J.; Ryabov, Eugene V.</p> <p>2014-01-01</p> <p>The impetus for this work was the need to analyse nucleotide <span class="hlt">diversity</span> in a viral mix taken from honeybees. The paper has two findings. First, a method for correction of next generation sequencing error in the distribution of nucleotides at a site is developed. Second, a package of methods for assessment of nucleotide <span class="hlt">diversity</span> is assembled. The error correction method is statistically based and works at the level of the nucleotide distribution rather than the level of individual nucleotides. The method relies on an error model and a sample of known viral genotypes that is used for model calibration. A compendium of existing and new <span class="hlt">diversity</span> <span class="hlt">analysis</span> tools is also presented, allowing hypotheses about <span class="hlt">diversity</span> and mean <span class="hlt">diversity</span> to be tested and associated confidence intervals to be calculated. The methods are illustrated using honeybee viral samples. Software in both Excel and Matlab and a guide are available at http://www2.warwick.ac.uk/fac/sci/systemsbiology/research/software/, the Warwick University Systems Biology Centre software download site. PMID:25405074</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27597653','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27597653"><span>Genetic <span class="hlt">diversity</span> trend in Indian rice varieties: an <span class="hlt">analysis</span> using SSR markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Singh, Nivedita; Choudhury, Debjani Roy; Tiwari, Gunjan; Singh, Amit Kumar; Kumar, Sundeep; Srinivasan, Kalyani; Tyagi, R K; Sharma, A D; Singh, N K; Singh, Rakesh</p> <p>2016-09-05</p> <p>The knowledge of the extent and pattern of <span class="hlt">diversity</span> in the crop species is a prerequisite for any crop improvement as it helps breeders in deciding suitable breeding strategies for their future improvement. Rice is the main staple crop in India with the large number of varieties released every year. Studies based on the small set of rice genotypes have reported a loss in genetic <span class="hlt">diversity</span> especially after green revolution. However, a detailed study of the trend of <span class="hlt">diversity</span> in Indian rice varieties is lacking. SSR markers have proven to be a marker of choice for studying the genetic <span class="hlt">diversity</span>. Therefore, the present study was undertaken with the aim to characterize and assess trends of genetic <span class="hlt">diversity</span> in a large set of Indian rice varieties (released between 1940-2013), conserved in the National Gene Bank of India using SSR markers. A set of 729 Indian rice varieties were genotyped using 36 HvSSR markers to assess the genetic <span class="hlt">diversity</span> and genetic relationship. A total of 112 alleles was amplified with an average of 3.11 alleles per locus with mean Polymorphic Information Content (PIC) value of 0.29. Cluster <span class="hlt">analysis</span> grouped these varieties into two clusters whereas the model based population structure divided them into three populations. AMOVA study based on hierarchical cluster and model based approach showed 3 % and 11 % variation between the populations, respectively. Decadal <span class="hlt">analysis</span> for gene <span class="hlt">diversity</span> and PIC showed increasing trend from 1940 to 2005, thereafter values for both the parameters showed decreasing trend between years 2006-2013. In contrast to this, allele number demonstrated increasing trend in these varieties released and notified between1940 to 1985, it remained nearly constant during 1986 to 2005 and again showed an increasing trend. Our results demonstrated that the Indian rice varieties harbors huge amount of genetic <span class="hlt">diversity</span>. However, the trait based improvement program in the last decades forced breeders to rely on few parents, which</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5762190','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5762190"><span>Use of an Autonomous Surface Vehicle reveals small-scale diel vertical migrations of <span class="hlt">zooplankton</span> and susceptibility to light pollution under low solar irradiance</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ludvigsen, Martin; Berge, Jørgen; Geoffroy, Maxime; Cohen, Jonathan H.; De La Torre, Pedro R.; Nornes, Stein M.; Singh, Hanumant; Sørensen, Asgeir J.; Daase, Malin; Johnsen, Geir</p> <p>2018-01-01</p> <p>Light is a major cue for nearly all life on Earth. However, most of our knowledge concerning the importance of light is based on organisms’ response to light during daytime, including the dusk and dawn phase. When it is dark, light is most often considered as pollution, with increasing appreciation of its negative ecological effects. Using an Autonomous Surface Vehicle fitted with a hyperspectral irradiance sensor and an acoustic profiler, we detected and quantified the behavior of <span class="hlt">zooplankton</span> in an unpolluted light environment in the high Arctic polar night and compared the results with that from a light-polluted environment close to our research vessels. First, in environments free of light pollution, the <span class="hlt">zooplankton</span> community is intimately connected to the ambient light regime and performs synchronized diel vertical migrations in the upper 30 m despite the sun never rising above the horizon. Second, the vast majority of the pelagic community exhibits a strong light-escape response in the presence of artificial light, observed down to 100 m. We conclude that artificial light from traditional sampling platforms affects the <span class="hlt">zooplankton</span> community to a degree where it is impossible to examine its abundance and natural rhythms within the upper 100 m. This study underscores the need to adjust sampling platforms, particularly in dim-light conditions, to capture relevant physical and biological data for ecological studies. It also highlights a previously unchartered susceptibility to light pollution in a region destined to see significant changes in light climate due to a reduced ice cover and an increased anthropogenic activity. PMID:29326985</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29326985','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29326985"><span>Use of an Autonomous Surface Vehicle reveals small-scale diel vertical migrations of <span class="hlt">zooplankton</span> and susceptibility to light pollution under low solar irradiance.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ludvigsen, Martin; Berge, Jørgen; Geoffroy, Maxime; Cohen, Jonathan H; De La Torre, Pedro R; Nornes, Stein M; Singh, Hanumant; Sørensen, Asgeir J; Daase, Malin; Johnsen, Geir</p> <p>2018-01-01</p> <p>Light is a major cue for nearly all life on Earth. However, most of our knowledge concerning the importance of light is based on organisms' response to light during daytime, including the dusk and dawn phase. When it is dark, light is most often considered as pollution, with increasing appreciation of its negative ecological effects. Using an Autonomous Surface Vehicle fitted with a hyperspectral irradiance sensor and an acoustic profiler, we detected and quantified the behavior of <span class="hlt">zooplankton</span> in an unpolluted light environment in the high Arctic polar night and compared the results with that from a light-polluted environment close to our research vessels. First, in environments free of light pollution, the <span class="hlt">zooplankton</span> community is intimately connected to the ambient light regime and performs synchronized diel vertical migrations in the upper 30 m despite the sun never rising above the horizon. Second, the vast majority of the pelagic community exhibits a strong light-escape response in the presence of artificial light, observed down to 100 m. We conclude that artificial light from traditional sampling platforms affects the <span class="hlt">zooplankton</span> community to a degree where it is impossible to examine its abundance and natural rhythms within the upper 100 m. This study underscores the need to adjust sampling platforms, particularly in dim-light conditions, to capture relevant physical and biological data for ecological studies. It also highlights a previously unchartered susceptibility to light pollution in a region destined to see significant changes in light climate due to a reduced ice cover and an increased anthropogenic activity.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3485178','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3485178"><span>Genetic <span class="hlt">diversity</span> and recombination <span class="hlt">analysis</span> of sweepoviruses from Brazil</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p></p> <p>2012-01-01</p> <p>Background Monopartite begomoviruses (genus Begomovirus, family Geminiviridae) that infect sweet potato (Ipomoea batatas) around the world are known as sweepoviruses. Because sweet potato plants are vegetatively propagated, the accumulation of viruses can become a major constraint for root production. Mixed infections of sweepovirus species and strains can lead to recombination, which may contribute to the generation of new recombinant sweepoviruses. Results This study reports the full genome sequence of 34 sweepoviruses sampled from a sweet potato germplasm bank and commercial fields in Brazil. These sequences were compared with others from public nucleotide sequence databases to provide a comprehensive overview of the genetic <span class="hlt">diversity</span> and patterns of genetic exchange in sweepoviruses isolated from Brazil, as well as to review the classification and nomenclature of sweepoviruses in accordance with the current guidelines proposed by the Geminiviridae Study Group of the International Committee on Taxonomy of Viruses (ICTV). Co-infections and extensive recombination events were identified in Brazilian sweepoviruses. <span class="hlt">Analysis</span> of the recombination breakpoints detected within the sweepovirus dataset revealed that most recombination events occurred in the intergenic region (IR) and in the middle of the C1 open reading frame (ORF). Conclusions The genetic <span class="hlt">diversity</span> of sweepoviruses was considerably greater than previously described in Brazil. Moreover, recombination <span class="hlt">analysis</span> revealed that a genomic exchange is responsible for the emergence of sweepovirus species and strains and provided valuable new information for understanding the <span class="hlt">diversity</span> and evolution of sweepoviruses. PMID:23082767</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/12659035','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/12659035"><span>Experimental evidence of the effect of nutrient enrichment on the <span class="hlt">zooplankton</span> in a Brazilian coastal lagoon.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kozlowsky-Suzuki, B; Bozelli, R L</p> <p>2002-11-01</p> <p>Non-treated sewage disposal is one of the main impacts to which Imboassica Lagoon has been subjected. The aim of this study was to evaluate the effect of a potential increase in the artificial enrichment on the environmental conditions and <span class="hlt">zooplankton</span> of this system. To this end, an experimental study was conducted in mesocosms where nutrients were added daily. Bacterial numbers, chlorophyll-a, and picoplanktonic cyanobacteria densities showed an increase with the availability of nutrients. Bacterio- and phytoplankton seemed to be regulated by the rotifers Brachionus rotundiformis and Hexarthra brandorffi.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/15695690','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/15695690"><span>Molecular <span class="hlt">analysis</span> of microbial <span class="hlt">diversity</span> in advanced caries.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chhour, Kim-Ly; Nadkarni, Mangala A; Byun, Roy; Martin, F Elizabeth; Jacques, Nicholas A; Hunter, Neil</p> <p>2005-02-01</p> <p>Real-time PCR <span class="hlt">analysis</span> of the total bacterial load in advanced carious lesions has shown that the total load exceeds the number of cultivable bacteria. This suggests that an unresolved complexity exists in bacteria associated with advanced caries. In this report, the profile of the microflora of carious dentine was explored by using DNA extracted from 10 lesions selected on the basis of comparable total microbial load and on the relative abundance of Prevotella spp. Using universal primers for the 16S rRNA gene, PCR amplicons were cloned, and approximately 100 transformants were processed for each lesion. Phylogenetic <span class="hlt">analysis</span> of 942 edited sequences demonstrated the presence of 75 species or phylotypes in the 10 carious lesions. Up to 31 taxa were represented in each sample. A <span class="hlt">diverse</span> array of lactobacilli were found to comprise 50% of the species, with prevotellae also abundant, comprising 15% of the species. Other taxa present in a number of lesions or occurring with high abundance included Selenomonas spp., Dialister spp., Fusobacterium nucleatum, Eubacterium spp., members of the Lachnospiraceae family, Olsenella spp., Bifidobacterium spp., Propionibacterium sp., and Pseudoramibacter alactolyticus. The mechanisms by which such <span class="hlt">diverse</span> patterns of bacteria extend carious lesions, including the aspect of infection of the vital dental pulp, remain unclear.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4025488','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4025488"><span>Genetic <span class="hlt">Diversity</span> <span class="hlt">Analysis</span> of Highly Incomplete SNP Genotype Data with Imputations: An Empirical Assessment</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Fu, Yong-Bi</p> <p>2014-01-01</p> <p>Genotyping by sequencing (GBS) recently has emerged as a promising genomic approach for assessing genetic <span class="hlt">diversity</span> on a genome-wide scale. However, concerns are not lacking about the uniquely large unbalance in GBS genotype data. Although some genotype imputation has been proposed to infer missing observations, little is known about the reliability of a genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of GBS data, with up to 90% of observations missing. Here we performed an empirical assessment of accuracy in genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of highly incomplete single nucleotide polymorphism genotypes with imputations. Three large single-nucleotide polymorphism genotype data sets for corn, wheat, and rice were acquired, and missing data with up to 90% of missing observations were randomly generated and then imputed for missing genotypes with three map-independent imputation methods. Estimating heterozygosity and inbreeding coefficient from original, missing, and imputed data revealed variable patterns of bias from assessed levels of missingness and genotype imputation, but the estimation biases were smaller for missing data without genotype imputation. The estimates of genetic differentiation were rather robust up to 90% of missing observations but became substantially biased when missing genotypes were imputed. The estimates of topology accuracy for four representative samples of interested groups generally were reduced with increased levels of missing genotypes. Probabilistic principal component <span class="hlt">analysis</span> based imputation performed better in terms of topology accuracy than those analyses of missing data without genotype imputation. These findings are not only significant for understanding the reliability of the genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> with respect to large missing data and genotype imputation but also are instructive for performing a proper genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of highly incomplete GBS or other genotype data. PMID:24626289</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/11601538','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/11601538"><span>Persistent organic pollutants (POPs) in a small, herbivorous, arctic marine <span class="hlt">zooplankton</span> (Calanus hyperboreus): trends from April to July and the influence of lipids and trophic transfer.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fisk, A T; Stern, G A; Hobson, K A; Strachan, W J; Loewen, M D; Norstrom, R J</p> <p>2001-01-01</p> <p>Samples of Calanus hyperboreus, a herbivorous copepod, were collected (n = 20) between April and July 1998, and water samples (n = 6) were collected in May 1998, in the Northwater Polynya (NOW) to examine persistent organic pollutants (POPs) in a high Arctic marine <span class="hlt">zooplankton</span>. Lipid content (dry weight) doubled, water content (r2 = 0.88) and delta15N (r2 = 0.54) significantly decreased, and delta13C significantly increased (r2 = 0.30) in the C. hyperboreus over the collection period allowing an examination of the role of these variables in POP dynamics in this small pelagic <span class="hlt">zooplankton</span>. The rank and concentrations of POP groups in C. hyperboreus over the entire sampling was sum of PCB (30.1 +/- 4.03 ng/g, dry weight) > sum of HCH (11.8 +/- 3.23) > sum of DDT (4.74 +/- 0.74), sum of CHLOR (4.44 +/- 1.0) > sum of CIBz (2.42 +/- 0.18), although these rankings varied considerably over the summer. The alpha- and gamma-HCH and lower chlorinated PCB congeners were the most common POPs in C. hyperboreus. The relationship between bioconcentration factor (BCF) and octanol-water partition coefficient (Kow) observed for the C. hyperboreus was linear and near 1:1 (slope = 0.72) for POPs with a log Kow between 3 and 6 but curvilinear when hydrophobic POPs (log Kow > 6) were included. Concentrations of sum of HCH. Sum of CHLOR and sum of CIBz increased over the sampling period, but no change in sum of PCB or sum of DDT was observed. After removing the effects of time, the variables lipid content, water content, delta15N and delta13C did not describe POP concentrations in C. hyperboreus. These results suggest that hydrophobic POP (log Kow = 3.86.0) concentrations in <span class="hlt">zooplankton</span> are likely to reflect water concentrations and that POPs do not biomagnify in C. hyperboreus or likely in other small, herbivorous <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26662446','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26662446"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of Capparis spinosa L. populations by using ISSR markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Liu, C; Xue, G P; Cheng, B; Wang, X; He, J; Liu, G H; Yang, W J</p> <p>2015-12-09</p> <p>Capparis spinosa L. is an important medicinal species in the Xinjiang Province of China. Ten natural populations of C. spinosa from 3 locations in North, Central, and South Xinjiang were studied using morphological trait inter simple sequence repeat (ISSR) molecular markers to assess the genetic <span class="hlt">diversity</span> and population structure. In this study, the 10 ISSR primers produced 313 amplified DNA fragments, with 52% of fragments being polymorphic. Unweighted pair-group method with arithmetic average (UPGMA) cluster <span class="hlt">analysis</span> indicated that 10 C. spinosa populations were clustered into 3 geographically distinct groups. The Nei gene of C. spinosa populations in different regions had <span class="hlt">Diversity</span> and Shannon's information index ranges of 0.1312-0.2001 and 0.1004-0.1875, respectively. The 362 markers were used to construct the dendrogram based on the UPGMA cluster <span class="hlt">analysis</span>. The dendrogram indicated that 10 populations of C. spinosa were clustered into 3 geographically distinct groups. The results showed these genotypes have high genetic <span class="hlt">diversity</span>, and can be used for an alternative breeding program.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22285017','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22285017"><span>Clonal <span class="hlt">diversity</span> <span class="hlt">analysis</span> using SNP microarray: a new prognostic tool for chronic lymphocytic leukemia.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhang, Linsheng; Znoyko, Iya; Costa, Luciano J; Conlin, Laura K; Daber, Robert D; Self, Sally E; Wolff, Daynna J</p> <p>2011-12-01</p> <p>Chronic lymphocytic leukemia (CLL) is a clinically heterogeneous disease. The methods currently used for monitoring CLL and determining conditions for treatment are limited in their ability to predict disease progression, patient survival, and response to therapy. Although clonal <span class="hlt">diversity</span> and the acquisition of new chromosomal abnormalities during the disease course (clonal evolution) have been associated with disease progression, their prognostic potential has been underappreciated because cytogenetic and fluorescence in situ hybridization (FISH) studies have a restricted ability to detect genomic abnormalities and clonal evolution. We hypothesized that whole genome <span class="hlt">analysis</span> using high resolution single nucleotide polymorphism (SNP) microarrays would be useful to detect <span class="hlt">diversity</span> and infer clonal evolution to offer prognostic information. In this study, we used the Infinium Omni1 BeadChip (Illumina, San Diego, CA) array for the <span class="hlt">analysis</span> of genetic variation and percent mosaicism in 25 non-selected CLL patients to explore the prognostic value of the assessment of clonal <span class="hlt">diversity</span> in patients with CLL. We calculated the percentage of mosaicism for each abnormality by applying a mathematical algorithm to the genotype frequency data and by manual determination using the Simulated DNA Copy Number (SiDCoN) tool, which was developed from a computer model of mosaicism. At least one genetic abnormality was identified in each case, and the SNP data was 98% concordant with FISH results. Clonal <span class="hlt">diversity</span>, defined as the presence of two or more genetic abnormalities with differing percentages of mosaicism, was observed in 12 patients (48%), and the <span class="hlt">diversity</span> correlated with the disease stage. Clonal <span class="hlt">diversity</span> was present in most cases of advanced disease (Rai stages III and IV) or those with previous treatment, whereas 9 of 13 patients without detected clonal <span class="hlt">diversity</span> were asymptomatic or clinically stable. In conclusion, SNP microarray studies with simultaneous evaluation</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4033230','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4033230"><span>Parasitic chytrids sustain <span class="hlt">zooplankton</span> growth during inedible algal bloom</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Rasconi, Serena; Grami, Boutheina; Niquil, Nathalie; Jobard, Marlène; Sime-Ngando, Télesphore</p> <p>2014-01-01</p> <p>This study assesses the quantitative impact of parasitic chytrids on the planktonic food web of two contrasting freshwater lakes during different algal bloom situations. Carbon-based food web models were used to investigate the effects of chytrids during the spring diatom bloom in Lake Pavin (oligo-mesotrophic) and the autumn cyanobacteria bloom in Lake Aydat (eutrophic). Linear inverse modeling was employed to estimate undetermined flows in both lakes. The Monte Carlo Markov chain linear inverse modeling procedure provided estimates of the ranges of model-derived fluxes. Model results confirm recent theories on the impact of parasites on food web function through grazers and recyclers. During blooms of “inedible” algae (unexploited by planktonic herbivores), the epidemic growth of chytrids channeled 19–20% of the primary production in both lakes through the production of grazer exploitable zoospores. The parasitic throughput represented 50% and 57% of the <span class="hlt">zooplankton</span> diet, respectively, in the oligo-mesotrophic and in the eutrophic lakes. Parasites also affected ecological network properties such as longer carbon path lengths and loop strength, and contributed to increase the stability of the aquatic food web, notably in the oligo-mesotrophic Lake Pavin. PMID:24904543</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29242669','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29242669"><span>Crustacean <span class="hlt">zooplankton</span> release copious amounts of dissolved organic matter as taurine in the ocean.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Clifford, Elisabeth L; Hansell, Dennis A; Varela, Marta M; Nieto-Cid, Mar; Herndl, Gerhard J; Sintes, Eva</p> <p>2017-11-01</p> <p>Taurine (Tau), an amino acid-like compound, is present in almost all marine metazoans including crustacean <span class="hlt">zooplankton</span>. It plays an important physiological role in these organisms and is released into the ambient water throughout their life cycle. However, limited information is available on the release rates by marine organisms, the concentrations and turnover of Tau in the ocean. We determined dissolved free Tau concentrations throughout the water column and its release by abundant crustacean mesozooplankton at two open ocean sites (Gulf of Alaska and North Atlantic). At both locations, the concentrations of dissolved free Tau were in the low nM range (up to 15.7 nM) in epipelagic waters, declining sharply in the mesopelagic to about 0.2 nM and remaining fairly stable throughout the bathypelagic waters. Pacific amphipod-copepod assemblages exhibited lower dissolved free Tau release rates per unit biomass (0.8 ± 0.4 μmol g -1 C-biomass h -1 ) than Atlantic copepods (ranging between 1.3 ± 0.4 μmol g -1 C-biomass h -1 and 9.5 ± 2.1 μmol g -1 C-biomass h -1 ), in agreement with the well-documented inverse relationship between biomass-normalized excretion rates and body size. Our results indicate that crustacean <span class="hlt">zooplankton</span> might contribute significantly to the dissolved organic matter flux in marine ecosystems via dissolved free Tau release. Based on the release rates and assuming steady state dissolved free Tau concentrations, turnover times of dissolved free Tau range from 0.05 d to 2.3 d in the upper water column and are therefore similar to those of dissolved free amino acids. This rapid turnover indicates that dissolved free Tau is efficiently consumed in oceanic waters, most likely by heterotrophic bacteria.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://eric.ed.gov/?q=Fisheries+AND+Fisheries&id=EJ1142161','ERIC'); return false;" href="https://eric.ed.gov/?q=Fisheries+AND+Fisheries&id=EJ1142161"><span>Qualitative Comparative <span class="hlt">Analysis</span>, Necessary Conditions, and Limited <span class="hlt">Diversity</span>: Some Problematic Consequences of Schneider and Wagemann's Enhanced Standard <span class="hlt">Analysis</span></span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Cooper, Barry; Glaesser, Judith</p> <p>2016-01-01</p> <p>We discuss a recent development in the set theoretic <span class="hlt">analysis</span> of data sets characterized by limited <span class="hlt">diversity</span>. Ragin, in developing his Qualitative Comparative <span class="hlt">Analysis</span> (QCA), developed a standard <span class="hlt">analysis</span> that produces parsimonious, intermediate, and complex Boolean solutions of truth tables. Schneider and Wagemann argue this standard analysis…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26498440','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26498440"><span>Diachronic <span class="hlt">analysis</span> of genetic <span class="hlt">diversity</span> in rice landraces under on-farm conservation in Yunnan, China.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cui, Di; Li, Jinmei; Tang, Cuifeng; A, Xinxiang; Yu, Tengqiong; Ma, Xiaoding; Zhang, Enlai; Cao, Guilan; Xu, Furong; Qiao, Yongli; Dai, Luyuan; Han, Longzhi</p> <p>2016-01-01</p> <p>Diachronic <span class="hlt">analysis</span> showed no significant changes in the level of genetic <span class="hlt">diversity</span> occurred over the past 27 years' domestication, which indicated genetic <span class="hlt">diversity</span> was successfully maintained under on-farm conservation. Rice (Oryza sativa L.) is one of the earliest domesticated crop species. Its genetic <span class="hlt">diversity</span> has been declining as a result of natural and artificial selection. In this study, we performed the first <span class="hlt">analysis</span> of the levels and patterns of nucleotide variation in rice genomes under on-farm conservation in Yunnan during a 27-year period of domestication. We performed large-scale sequencing of 600 rice accessions with high <span class="hlt">diversity</span>, which were collected in 1980 and 2007, using ten unlinked nuclear loci. Diachronic <span class="hlt">analysis</span> showed no significant changes in the level of genetic <span class="hlt">diversity</span> occurring over the past 27 years' domestication, which indicated genetic <span class="hlt">diversity</span> was successfully maintained under on-farm conservation. Population structure revealed that the rice landraces could be grouped into two subpopulations, namely the indica and japonica groups. Interestingly, the alternate distribution of indica and japonica rice landraces could be found in each ecological zone. The results of AMOVA showed that on-farm conservation provides opportunities for continued differentiation and variation of landraces. Therefore, dynamic conservation measures such as on-farm conservation (which is a backup, complementary strategy to ex situ conservation) should be encouraged and enhanced, especially in crop genetic <span class="hlt">diversity</span> centers. The results of this study offered accurate insights into short-term evolutionary processes and provided a scientific basis for on-farm management practices.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/49828','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/49828"><span>Toward exploratory <span class="hlt">analysis</span> of <span class="hlt">diversity</span> unified across fields of study: an information visualization approach</span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Tuan Pham; Julia Jones; Ronald Metoyer; Frederick Colwell</p> <p>2014-01-01</p> <p>The study of the <span class="hlt">diversity</span> of multivariate objects shares common characteristics and goals across disciplines, including ecology and organizational management. Nevertheless, subject-matter experts have adopted somewhat separate <span class="hlt">diversity</span> concepts and <span class="hlt">analysis</span> techniques, limiting the potential for sharing and comparing across disciplines. Moreover, while large and...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016ECSS..180...41A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016ECSS..180...41A"><span>Influence of biotic variables on invertebrate size structure and <span class="hlt">diversity</span> in coastal wetlands of Southeastern Spain</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Antón-Pardo, María; Armengol, Xavier</p> <p>2016-10-01</p> <p>Biomass and size-based estimations provide relevant information regarding ecosystem functioning and biotic interactions. Our aims were to study the effect of fish and macrophytes on the size structure of invertebrate assemblages (from rotifers to insects) in a set of coastal water bodies, estimating the biomass (total and main invertebrate groups), the biomass-size spectra (model of Pareto) and size <span class="hlt">diversity</span>. In fishless ponds, cladoceran and ostracod biomass were higher, and they presented greater size <span class="hlt">diversity</span>. In fish ponds, rotifer biomass presented greater proportion; while in fishless ponds, cladocerans were usually the most abundant taxa and the largest organisms. The biomass size spectra showed more irregularities in fishless ponds, due to the low densities of small taxa (rotifers and copepod juveniles) and big taxa (malacostraceans or insects). Differences is size structure and <span class="hlt">diversity</span> were also observed between spring and summer, suggesting a higher recruitment of juveniles in spring, and thus, a higher predation pressure upon <span class="hlt">zooplankton</span> at that moment. Macrophyte cover did not apparently influence those parameters, except for the biomass of ostracods, copepods, and insects. Therefore, predation by fish strongly affected invertebrate biomass, reflecting their selective feeding, and allowing high densities of small taxa. Predation pressure decreased size <span class="hlt">diversity</span>, by limiting the abundance of vulnerable taxa of specific size. Seasonal changes were likely related to the spring recruitment of fish juveniles. The presence of small fish and invertebrate predator taxa among the macrophytes, restrict their role as refuges for prey invertebrates.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23025072','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23025072"><span>Demography of <span class="hlt">zooplankton</span> (Anuraeopsis fissa, Brachionus rubens and Moina macrocopa) fed Chlorella vulgaris and Scenedesmus acutus cultured on different media.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Morales-Ventura, Jesús; Nandini, S; Sarma, S S S; Castellanos-Páez, Maria Elena</p> <p>2012-09-01</p> <p>Generally <span class="hlt">zooplankton</span> growth is often limited by the quality of their algal diet. A cheaper common practice in aquaculture, is to culture algae with fertilizers; however, the demography of <span class="hlt">zooplankton</span> when fed these algae has not yet been evaluated. We studied the population growth and life table demography of the rotifers Anuraeopsis fissa and Brachionus rubens, and the cladoceran Moina macrocopa. For this, the algae Scenedesmus acutus or Chlorella vulgaris were cultured on defined (Bold's basal) medium or the commercial liquid fertilizer (Bayfolan). Experiments were conducted at one algal concentration 1.0 x 10(6) cells/mL of C. vulgaris or its equivalent dry weight of 0.5 x 10(6) cells/mL of S. acutus. The population dynamics were tested at 23 +/- 1 degrees C in 100 mL transparent jars, each with 50mL of the test medium, with an initial density of 0.5indiv/mL, for a total of 48 test jars (3 <span class="hlt">zooplankton</span> 2 algal species x 2 culture media x 4 replicates). For the life table experiments with M. macrocopa, we introduced 10 neonates (<24h old) into each test jar containing the specific algal type and concentration. For the rotifer experiments, we set 5mL tubes with one neonate each and 10 replicates for each algal species and culture medium. We found that the average rotifer life span was not influenced by the diet, but for M. macrocopa fed S. acutus cultured in Bold's medium, the average lifespan was significantly lower than with the other diets. The gross and net reproductive rates of A. fissa (ranging from 18-36 offspring per female) were significantly higher for C vulgaris cultured in Bold medium. Regardless of the culture medium, Chlorella resulted in significantly higher gross and net reproductive rates for B. rubens than S. acutus diets. The reproductive rates of M. macrocopa were significantly higher in all the tested diets except when fed with S. acutus in Bold medium. The population increase rate, derived from growth experiments of A. fissa and B. rubens</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028376','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028376"><span>Resource availability controls fungal <span class="hlt">diversity</span> across a plant <span class="hlt">diversity</span> gradient</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Waldrop, M.P.; Zak, D.R.; Blackwood, C.B.; Curtis, C.D.; Tilman, D.</p> <p>2006-01-01</p> <p>Despite decades of research, the ecological determinants of microbial <span class="hlt">diversity</span> remain poorly understood. Here, we test two alternative hypotheses concerning the factors regulating fungal <span class="hlt">diversity</span> in soil. The first states that higher levels of plant detritus production increase the supply of limiting resources (i.e. organic substrates) thereby increasing fungal <span class="hlt">diversity</span>. Alternatively, greater plant <span class="hlt">diversity</span> increases the range of organic substrates entering soil, thereby increasing the number of niches to be filled by a greater array of heterotrophic fungi. These two hypotheses were simultaneously examined in experimental plant communities consisting of one to 16 species that have been maintained for a decade. We used ribosomal intergenic spacer <span class="hlt">analysis</span> (RISA), in combination with cloning and sequencing, to quantify fungal community composition and <span class="hlt">diversity</span> within the experimental plant communities. We used soil microbial biomass as a temporally integrated measure of resource supply. Plant <span class="hlt">diversity</span> was unrelated to fungal <span class="hlt">diversity</span>, but fungal <span class="hlt">diversity</span> was a unimodal function of resource supply. Canonical correspondence <span class="hlt">analysis</span> (CCA) indicated that plant <span class="hlt">diversity</span> showed a relationship to fungal community composition, although the occurrence of RISA bands and operational taxonomic units (OTUs) did not differ among the treatments. The relationship between fungal <span class="hlt">diversity</span> and resource availability parallels similar relationships reported for grasslands, tropical forests, coral reefs, and other biotic communities, strongly suggesting that the same underlying mechanisms determine the <span class="hlt">diversity</span> of organisms at multiple scales. ?? 2006 Blackwell Publishing Ltd/CNRS.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_21 --> <div id="page_22" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="421"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009SPIE.7352E..0MC','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009SPIE.7352E..0MC"><span>Improving sensor data <span class="hlt">analysis</span> through <span class="hlt">diverse</span> data source integration</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Casper, Jennifer; Albuquerque, Ronald; Hyland, Jeremy; Leveille, Peter; Hu, Jing; Cheung, Eddy; Mauer, Dan; Couture, Ronald; Lai, Barry</p> <p>2009-05-01</p> <p>Daily sensor data volumes are increasing from gigabytes to multiple terabytes. The manpower and resources needed to analyze the increasing amount of data are not growing at the same rate. Current volumes of <span class="hlt">diverse</span> data, both live streaming and historical, are not fully analyzed. Analysts are left mostly to analyzing the individual data sources manually. This is both time consuming and mentally exhausting. Expanding data collections only exacerbate this problem. Improved data management techniques and <span class="hlt">analysis</span> methods are required to process the increasing volumes of historical and live streaming data sources simultaneously. Improved techniques are needed to reduce an analysts decision response time and to enable more intelligent and immediate situation awareness. This paper describes the Sensor Data and <span class="hlt">Analysis</span> Framework (SDAF) system built to provide analysts with the ability to pose integrated queries on <span class="hlt">diverse</span> live and historical data sources, and plug in needed algorithms for upstream processing and filtering. The SDAF system was inspired by input and feedback from field analysts and experts. This paper presents SDAF's capabilities, implementation, and reasoning behind implementation decisions. Finally, lessons learned from preliminary tests and deployments are captured for future work.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4406718','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4406718"><span>Capturing Nature's <span class="hlt">Diversity</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Pascolutti, Mauro; Campitelli, Marc; Nguyen, Bao; Pham, Ngoc; Gorse, Alain-Dominique; Quinn, Ronald J.</p> <p>2015-01-01</p> <p>Natural products are universally recognized to contribute valuable chemical <span class="hlt">diversity</span> to the design of molecular screening libraries. The <span class="hlt">analysis</span> undertaken in this work, provides a foundation for the generation of fragment screening libraries that capture the <span class="hlt">diverse</span> range of molecular recognition building blocks embedded within natural products. Physicochemical properties were used to select fragment-sized natural products from a database of known natural products (Dictionary of Natural Products). PCA <span class="hlt">analysis</span> was used to illustrate the positioning of the fragment subset within the property space of the non-fragment sized natural products in the dataset. Structural <span class="hlt">diversity</span> was analysed by three distinct methods: atom function <span class="hlt">analysis</span>, using pharmacophore fingerprints, atom type <span class="hlt">analysis</span>, using radial fingerprints, and scaffold <span class="hlt">analysis</span>. Small pharmacophore triplets, representing the range of chemical features present in natural products that are capable of engaging in molecular interactions with small, contiguous areas of protein binding surfaces, were analysed. We demonstrate that fragment-sized natural products capture more than half of the small pharmacophore triplet <span class="hlt">diversity</span> observed in non fragment-sized natural product datasets. Atom type <span class="hlt">analysis</span> using radial fingerprints was represented by a self-organizing map. We examined the structural <span class="hlt">diversity</span> of non-flat fragment-sized natural product scaffolds, rich in sp3 configured centres. From these results we demonstrate that 2-ring fragment-sized natural products effectively balance the opposing characteristics of minimal complexity and broad structural <span class="hlt">diversity</span> when compared to the larger, more complex fragment-like natural products. These naturally-derived fragments could be used as the starting point for the generation of a highly <span class="hlt">diverse</span> library with the scope for further medicinal chemistry elaboration due to their minimal structural complexity. This study highlights the possibility to capture a</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22555356','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22555356"><span>Combining counts and incidence data: an efficient approach for estimating the log-normal species abundance distribution and <span class="hlt">diversity</span> indices.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bellier, Edwige; Grøtan, Vidar; Engen, Steinar; Schartau, Ann Kristin; Diserud, Ola H; Finstad, Anders G</p> <p>2012-10-01</p> <p>Obtaining accurate estimates of <span class="hlt">diversity</span> indices is difficult because the number of species encountered in a sample increases with sampling intensity. We introduce a novel method that requires that the presence of species in a sample to be assessed while the counts of the number of individuals per species are only required for just a small part of the sample. To account for species included as incidence data in the species abundance distribution, we modify the likelihood function of the classical Poisson log-normal distribution. Using simulated community assemblages, we contrast <span class="hlt">diversity</span> estimates based on a community sample, a subsample randomly extracted from the community sample, and a mixture sample where incidence data are added to a subsample. We show that the mixture sampling approach provides more accurate estimates than the subsample and at little extra cost. <span class="hlt">Diversity</span> indices estimated from a freshwater <span class="hlt">zooplankton</span> community sampled using the mixture approach show the same pattern of results as the simulation study. Our method efficiently increases the accuracy of <span class="hlt">diversity</span> estimates and comprehension of the left tail of the species abundance distribution. We show how to choose the scale of sample size needed for a compromise between information gained, accuracy of the estimates and cost expended when assessing biological <span class="hlt">diversity</span>. The sample size estimates are obtained from key community characteristics, such as the expected number of species in the community, the expected number of individuals in a sample and the evenness of the community.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4404055','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4404055"><span>Understanding Genetic <span class="hlt">Diversity</span> and Population Structure of a Poa pratensis Worldwide Collection through Morphological, Nuclear and Chloroplast <span class="hlt">Diversity</span> <span class="hlt">Analysis</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Russi, Luigi; Marconi, Gianpiero; Sharbel, Timothy F.; Veronesi, Fabio; Albertini, Emidio</p> <p>2015-01-01</p> <p>Poa pratensis L. is a forage and turf grass species well adapted to a wide range of mesic to moist habitats. Due to its genome complexity little is known regarding evolution, genome composition and intraspecific phylogenetic relationships of this species. In the present study we investigated the morphological and genetic <span class="hlt">diversity</span> of 33 P. pratensis accessions from 23 different countries using both nuclear and chloroplast molecular markers as well as flow cytometry of somatic tissues. This with the aim of shedding light on the genetic <span class="hlt">diversity</span> and phylogenetic relationships of the collection that includes both cultivated and wild materials. Morphological characterization showed that the most relevant traits able to distinguish cultivated from wild forms were spring growth habit and leaf colour. The genome size <span class="hlt">analysis</span> revealed high variability both within and between accessions in both wild and cultivated materials. The sequence <span class="hlt">analysis</span> of the trnL-F chloroplast region revealed a low polymorphism level that could be the result of the complex mode of reproduction of this species. In addition, a strong reduction of chloroplast SSR variability was detected in cultivated materials, where only two alleles were conserved out of the four present in wild accessions. Contrarily, at nuclear level, high variability exist in the collection where the <span class="hlt">analysis</span> of 11 SSR loci allowed the detection of a total of 91 different alleles. A Bayesian <span class="hlt">analysis</span> performed on nuclear SSR data revealed that studied materials belong to two main clusters. While wild materials are equally represented in both clusters, the domesticated forms are mostly belonging to cluster P2 which is characterized by lower genetic <span class="hlt">diversity</span> compared to the cluster P1. In the Neighbour Joining tree no clear distinction was found between accessions with the exception of those from China and Mongolia that were clearly separated from all the others. PMID:25893249</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27058991','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27058991"><span>Direct and indirect effects of glaciers on aquatic biodiversity in high Andean peatlands.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Quenta, Estefania; Molina-Rodriguez, Jorge; Gonzales, Karina; Rebaudo, François; Casas, Jérôme; Jacobsen, Dean; Dangles, Olivier</p> <p>2016-09-01</p> <p>The rapid melting of glacier cover is one of the most obvious impacts of climate change on alpine ecosystems and biodiversity. Our understanding of the impact of a decrease in glacier runoff on aquatic biodiversity is currently based on the 'glacier-heterogeneity-<span class="hlt">diversity</span>' paradigm, according to which there is high α-<span class="hlt">diversity</span> at intermediate levels of glacial influence due to the high degree of environmental heterogeneity caused by glacier water. This α-<span class="hlt">diversity</span> pattern generates high levels of between-site aquatic community variation (high β <span class="hlt">diversity</span>) and increases regional <span class="hlt">diversity</span> (γ-<span class="hlt">diversity</span>). There is a rich conceptual background in favor of this paradigm, but empirical data supporting it are scarce. We investigated this paradigm by analyzing the different <span class="hlt">diversity</span> patterns (α, β and γ-<span class="hlt">diversity</span>) of four aquatic groups (<span class="hlt">zooplankton</span>, macroinvertebrates, algae and macrophytes) living in high-elevation peatlands (>4500 m above sea level). We sampled 200 pools from 20 peatlands along a glacier gradient in the Cordillera Real of Bolivia. We performed structural equation modeling (SEM) to analyze the potential mechanisms underlying the observed <span class="hlt">diversity</span> patterns. Intermediate levels of glacial influence (15-20% cover) resulted in high heterogeneity, but α-<span class="hlt">diversity</span> responded to glacial influence only for the <span class="hlt">zooplankton</span> group (Cladocera). Our SEM <span class="hlt">analysis</span> did not identify environmental heterogeneity as a significant variable explaining the relationship between glacier and α-<span class="hlt">diversity</span>. Peatland area had a strong positive effect on heterogeneity and <span class="hlt">diversity</span>. β-<span class="hlt">diversity</span> was significantly associated with glacier gradient, and 12.9% of the total regional <span class="hlt">diversity</span> (γ-<span class="hlt">diversity</span>) was restricted to peatlands with a high degree of glacial influence. These species might be lost in a context of glacial retreat. These findings provide new insight into the potential effects of glacial retreat on the aquatic environment and biodiversity in the peatlands of</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005IJMSp.242..217S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005IJMSp.242..217S"><span>Isotope dilution technique for quantitative <span class="hlt">analysis</span> of endogenous trace element species in biological systems</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Schaumlöffel, Dirk; Lobinski, Ryszard</p> <p>2005-04-01</p> <p>The aim of this study was to develop an inductively coupled plasma mass spectrometry (ICPMS) method for the determination of enriched species-specific mercury tracers at ng L-1 levels (ppt) in <span class="hlt">zooplankton</span> and aquatic samples from biological tracer experiments. Applying a cold vapor sector field ICPMS method a high sensitivity was obtained, i.e., 106 cps for 1 [mu]g L-1 of natural mercury measured on 202Hg+, which in turn enabled the measurement of mercury isotope ratios with a 0.6-1.4%R.S.D. precision for a 50 ng L-1 standard. This method was used to quantify CH3201Hg+ and 200Hg2+ tracers in <span class="hlt">zooplankton</span> from a biological tracer experiment with the aim of investigating the effects of algal density and <span class="hlt">zooplankton</span> density on mercury bioaccumulation in <span class="hlt">zooplankton</span> in a fresh water system. For quantification purposes a known amount of 199Hg+ was added to the <span class="hlt">zooplankton</span> samples before digestion. The digested samples were analyzed and the resulting ICPMS spectra split into four spectra one for each of the four sources of mercury present in the sample (CH3201Hg+, 200Hg2+, 199Hg2+ and natural mercury) using algebraic de-convoluting. The CH3201Hg+ and 200Hg2+ tracers were quantified using an isotope dilution approach with the added 199Hg+. Detection limits were 0.6 and 0.2 ng L-1 for 200Hg+ and CH3201Hg+, respectively. The coefficient of variation on the tracer determinations was approximately 18% CV estimated from the <span class="hlt">analysis</span> of real samples with tracer concentrations in the <0.1-100 ng L-1 range. The developed method was successfully applied for the determination of species-specific mercury tracers in <span class="hlt">zooplankton</span> samples from a biological tracer experiment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26839684','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26839684"><span>Response of pest control by generalist predators to local-scale plant <span class="hlt">diversity</span>: a meta-<span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dassou, Anicet Gbèblonoudo; Tixier, Philippe</p> <p>2016-02-01</p> <p>Disentangling the effects of plant <span class="hlt">diversity</span> on the control of herbivores is important for understanding agricultural sustainability. Recent studies have investigated the relationships between plant <span class="hlt">diversity</span> and arthropod communities at the landscape scale, but few have done so at the local scale. We conducted a meta-<span class="hlt">analysis</span> of 32 papers containing 175 independent measures of the relationship between plant <span class="hlt">diversity</span> and arthropod communities. We found that generalist predators had a strong positive response to plant <span class="hlt">diversity</span>, that is, their abundance increased as plant <span class="hlt">diversity</span> increased. Herbivores, in contrast, had an overall weak and negative response to plant <span class="hlt">diversity</span>. However, specialist and generalist herbivores differed in their response to plant <span class="hlt">diversity</span>, that is, the response was negative for specialists and not significant for generalists. While the effects of scale remain unclear, the response to plant <span class="hlt">diversity</span> tended to increase for specialist herbivores, but decrease for generalist herbivores as the scale increased. There was no clear effect of scale on the response of generalist predators to plant <span class="hlt">diversity</span>. Our results suggest that the response of herbivores to plant <span class="hlt">diversity</span> at the local scale is a balance between habitat and trophic effects that vary according to arthropod specialization and habitat type. Synthesis and applications. Positive effects of plant <span class="hlt">diversity</span> on generalist predators confirm that, at the local scale, plant diversification of agroecosystems is a credible and promising option for increasing pest regulation. Results from our meta-<span class="hlt">analysis</span> suggest that natural control in plant-diversified systems is more likely to occur for specialist than for generalist herbivores. In terms of pest management, our results indicate that small-scale plant diversification (via the planting of cover crops or intercrops and reduced weed management) is likely to increase the control of specialist herbivores by generalist predators.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.4549U','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.4549U"><span>Evidence of <span class="hlt">zooplankton</span> vertical migration from continuous Southern Adriatic buoy current-meter records (E2-M3A)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ursella, Laura; Cardin, Vanessa; Batistić, Mirna</p> <p>2017-04-01</p> <p>The E2-M3A Station is deployed in the southern Adriatic Sea, at about 1200 m depth, in the center of the cyclonic gyre where deep convection process takes place, involving both the atmosphere and the ocean dynamics and forming new dense and oxygenated waters, thus triggering the solubility and the biological pump. In particular, the E2M3A is equipped with an upward looking 150 kHz RDI-Acoustic Doppler Current Profiler (ADCP) positioned between 265 and 320 m depth, with a vertical resolution of 5 m and a range of 250-300 m. The mooring line has been in water since November 2006, with an interruption from September 2010 until May 2011. ADCP backscattering signal is very useful in determining <span class="hlt">zooplankton</span> distribution and variability at various time scales, including seasonal/annual behavior and diel vertical migration (DVM). From ADCP backscattering signal, backscattering strength (Sv) was calculated for the entire dataset. Sv permits to quantify qualitatively the scatters present in the water, i.e. the particulate and/or the phyto/zoo-plankton. <span class="hlt">Zooplankton</span> distribution is dependent on phytoplankton presence and blooms, which on its own depend on nutrients availability (related to wind-induced vertical mixing), but also on sunlight. The variation in time of Sv together with vertical velocity allows for measuring DVM of <span class="hlt">zooplankton</span> and its variability with seasons and years. Alternation of high and low values for Sv are present all year long with differences in intensities in particular in the surface layer. Quite high values for Sv are found in spring and summer; in spring they are found along a large part of the water column, while in summer they are detected prevalently in the upper part of the measurement range. This behavior is related to the conditions of the water column, i.e. mixing and nutrients availability, which influence phytoplankton blooms and therefore <span class="hlt">zooplankton</span> growing and movements. Correlating Net Primary Production obtained from model and Mixed</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://files.eric.ed.gov/fulltext/EJ1126321.pdf','ERIC'); return false;" href="http://files.eric.ed.gov/fulltext/EJ1126321.pdf"><span><span class="hlt">Analysis</span> of Primary School Teachers' Opinions on Family <span class="hlt">Diversity</span></span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Bosch, Alvaro Capano; Massonnier, Natalie; González Tornaría, Maria del L.</p> <p>2016-01-01</p> <p>This article aims to do an <span class="hlt">analysis</span> based on the opinion of primary school teachers on family models that are different from the traditional nuclear family. We worked with 60 teachers from Montevideo and the metropolitan area. They answered the Questionnaire: Teachers' Opinion on Family <span class="hlt">Diversity</span> (CIDF for its Spanish acronym) (Morgado,…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/15913663','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/15913663"><span>Extended probit mortality model for <span class="hlt">zooplankton</span> against transient change of PCO(2).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sato, Toru; Watanabe, Yuji; Toyota, Koji; Ishizaka, Joji</p> <p>2005-09-01</p> <p>The direct injection of CO(2) in the deep ocean is a promising way to mitigate global warming. One of the uncertainties in this method, however, is its impact on marine organisms in the near field. Since the concentration of CO(2), which organisms experience in the ocean, changes with time, it is required to develop a biological impact model for the organisms against the unsteady change of CO(2) concentration. In general, the LC(50) concept is widely applied for testing a toxic agent for the acute mortality. Here, we regard the probit-transformed mortality as a linear function not only of the concentration of CO(2) but also of exposure time. A simple mathematical transform of the function gives a damage-accumulation mortality model for <span class="hlt">zooplankton</span>. In this article, this model was validated by the mortality test of Metamphiascopsis hirsutus against the transient change of CO(2) concentration.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5330503','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5330503"><span>Conformational <span class="hlt">diversity</span> <span class="hlt">analysis</span> reveals three functional mechanisms in proteins</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Fornasari, María Silvina</p> <p>2017-01-01</p> <p>Protein motions are a key feature to understand biological function. Recently, a large-scale <span class="hlt">analysis</span> of protein conformational <span class="hlt">diversity</span> showed a positively skewed distribution with a peak at 0.5 Å C-alpha root-mean-square-deviation (RMSD). To understand this distribution in terms of structure-function relationships, we studied a well curated and large dataset of ~5,000 proteins with experimentally determined conformational <span class="hlt">diversity</span>. We searched for global behaviour patterns studying how structure-based features change among the available conformer population for each protein. This procedure allowed us to describe the RMSD distribution in terms of three main protein classes sharing given properties. The largest of these protein subsets (~60%), which we call “rigid” (average RMSD = 0.83 Å), has no disordered regions, shows low conformational <span class="hlt">diversity</span>, the largest tunnels and smaller and buried cavities. The two additional subsets contain disordered regions, but with differential sequence composition and behaviour. Partially disordered proteins have on average 67% of their conformers with disordered regions, average RMSD = 1.1 Å, the highest number of hinges and the longest disordered regions. In contrast, malleable proteins have on average only 25% of disordered conformers and average RMSD = 1.3 Å, flexible cavities affected in size by the presence of disordered regions and show the highest <span class="hlt">diversity</span> of cognate ligands. Proteins in each set are mostly non-homologous to each other, share no given fold class, nor functional similarity but do share features derived from their conformer population. These shared features could represent conformational mechanisms related with biological functions. PMID:28192432</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24031882','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24031882"><span>Multilocus sequence <span class="hlt">analysis</span> (MLSA) of Bradyrhizobium strains: revealing high <span class="hlt">diversity</span> of tropical diazotrophic symbiotic bacteria.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Delamuta, Jakeline Renata Marçon; Ribeiro, Renan Augusto; Menna, Pâmela; Bangel, Eliane Villamil; Hungria, Mariangela</p> <p>2012-04-01</p> <p>Symbiotic association of several genera of bacteria collectively called as rhizobia and plants belonging to the family Leguminosae (=Fabaceae) results in the process of biological nitrogen fixation, playing a key role in global N cycling, and also bringing relevant contributions to the agriculture. Bradyrhizobium is considered as the ancestral of all nitrogen-fixing rhizobial species, probably originated in the tropics. The genus encompasses a variety of <span class="hlt">diverse</span> bacteria, but the <span class="hlt">diversity</span> captured in the <span class="hlt">analysis</span> of the 16S rRNA is often low. In this study, we analyzed twelve Bradyrhizobium strains selected from previous studies performed by our group for showing high genetic <span class="hlt">diversity</span> in relation to the described species. In addition to the 16S rRNA, five housekeeping genes (recA, atpD, glnII, gyrB and rpoB) were analyzed in the MLSA (multilocus sequence <span class="hlt">analysis</span>) approach. <span class="hlt">Analysis</span> of each gene and of the concatenated housekeeping genes captured a considerably higher level of genetic <span class="hlt">diversity</span>, with indication of putative new species. The results highlight the high genetic variability associated with Bradyrhizobium microsymbionts of a variety of legumes. In addition, the MLSA approach has proved to represent a rapid and reliable method to be employed in phylogenetic and taxonomic studies, speeding the identification of the still poorly known <span class="hlt">diversity</span> of nitrogen-fixing rhizobia in the tropics.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26134102','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26134102"><span><span class="hlt">Diversity</span> Performance <span class="hlt">Analysis</span> on Multiple HAP Networks.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dong, Feihong; Li, Min; Gong, Xiangwu; Li, Hongjun; Gao, Fengyue</p> <p>2015-06-30</p> <p>One of the main design challenges in wireless sensor networks (WSNs) is achieving a high-data-rate transmission for individual sensor devices. The high altitude platform (HAP) is an important communication relay platform for WSNs and next-generation wireless networks. Multiple-input multiple-output (MIMO) techniques provide the <span class="hlt">diversity</span> and multiplexing gain, which can improve the network performance effectively. In this paper, a virtual MIMO (V-MIMO) model is proposed by networking multiple HAPs with the concept of multiple assets in view (MAV). In a shadowed Rician fading channel, the <span class="hlt">diversity</span> performance is investigated. The probability density function (PDF) and cumulative distribution function (CDF) of the received signal-to-noise ratio (SNR) are derived. In addition, the average symbol error rate (ASER) with BPSK and QPSK is given for the V-MIMO model. The system capacity is studied for both perfect channel state information (CSI) and unknown CSI individually. The ergodic capacity with various SNR and Rician factors for different network configurations is also analyzed. The simulation results validate the effectiveness of the performance <span class="hlt">analysis</span>. It is shown that the performance of the HAPs network in WSNs can be significantly improved by utilizing the MAV to achieve overlapping coverage, with the help of the V-MIMO techniques.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4541836','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4541836"><span><span class="hlt">Diversity</span> Performance <span class="hlt">Analysis</span> on Multiple HAP Networks</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Dong, Feihong; Li, Min; Gong, Xiangwu; Li, Hongjun; Gao, Fengyue</p> <p>2015-01-01</p> <p>One of the main design challenges in wireless sensor networks (WSNs) is achieving a high-data-rate transmission for individual sensor devices. The high altitude platform (HAP) is an important communication relay platform for WSNs and next-generation wireless networks. Multiple-input multiple-output (MIMO) techniques provide the <span class="hlt">diversity</span> and multiplexing gain, which can improve the network performance effectively. In this paper, a virtual MIMO (V-MIMO) model is proposed by networking multiple HAPs with the concept of multiple assets in view (MAV). In a shadowed Rician fading channel, the <span class="hlt">diversity</span> performance is investigated. The probability density function (PDF) and cumulative distribution function (CDF) of the received signal-to-noise ratio (SNR) are derived. In addition, the average symbol error rate (ASER) with BPSK and QPSK is given for the V-MIMO model. The system capacity is studied for both perfect channel state information (CSI) and unknown CSI individually. The ergodic capacity with various SNR and Rician factors for different network configurations is also analyzed. The simulation results validate the effectiveness of the performance <span class="hlt">analysis</span>. It is shown that the performance of the HAPs network in WSNs can be significantly improved by utilizing the MAV to achieve overlapping coverage, with the help of the V-MIMO techniques. PMID:26134102</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015PrOce.134...77P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015PrOce.134...77P"><span>Changes in <span class="hlt">zooplankton</span> habitat, behavior, and acoustic scattering characteristics across glider-resolved fronts in the Southern California Current System</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Powell, Jesse R.; Ohman, Mark D.</p> <p>2015-05-01</p> <p>We report cross-frontal changes in the characteristics of plankton proxy variables measured by autonomous Spray ocean gliders operating within the Southern California Current System (SCCS). A comparison of conditions across the 154 positive frontal gradients (i.e., where density of the surface layer decreased in the offshore direction) identified from six years of continuous measurements showed that waters on the denser side of the fronts typically showed higher Chl-a fluorescence, shallower euphotic zones, and higher acoustic backscatter than waters on the less dense side. Transitions between these regions were relatively abrupt. For positive fronts the amplitude of Diel Vertical Migration (DVM), inferred from a 3-beam 750 kHz acoustic Doppler profiler, increased offshore of fronts and covaried with optical transparency of the water column. Average interbeam variability in acoustic backscatter also changed across many positive fronts within 3 depth strata (0-150 m, 150-400 m, and 400-500 m), revealing a front-related change in the acoustic scattering characteristics of the assemblages. The extent of vertical stratification of distinct scattering assemblages was also more pronounced offshore of positive fronts. Depth-stratified <span class="hlt">zooplankton</span> samples collected by Mocness nets corroborated the autonomous measurements, showing copepod-dominated assemblages and decreased <span class="hlt">zooplankton</span> body sizes offshore and euphausiid-dominated assemblages with larger median body sizes inshore of major frontal features.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA505087','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA505087"><span>Investigating the Relationship Between Fin and Blue Whale Locations, <span class="hlt">Zooplankton</span> Concentrations and Hydrothermal Venting on the Juan de Fuca Ridge</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2008-01-01</p> <p>such correlations in terms of the influences of globally distributed hydrothermal plumes on the trophic ecology of the deep ocean. OBJECTIVES We are...in a 100-m-thick layer of increased acoustic backscatter near the top of the hydrothermal plume at 1.9 km depth (Thomson et al., 1991, Burd et al...<span class="hlt">zooplankton</span> migrate vertically between the upper ocean and the hydrothermal plume (Burd & Thomson, 1994). This interpretation is consistent with a</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA532053','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA532053"><span>Investigating the Relationship Between Fin and Blue Whale Locations, <span class="hlt">Zooplankton</span> Concentrations and Hydrothermal Venting on the Juan de Fuca Ridge</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2009-09-30</p> <p>Ridge. Our goal is to understand the influences of globally distributed hydrothermal plumes on the trophic ecology of the deep ocean. OBJECTIVES...to understand the influences of globally distributed hydrothermal plumes on the trophic ecology of the deep ocean. 15. SUBJECT TERMS 16. SECURITY... hydrothermal plume at 1.9 km depth [Burd et al., 1992; Thomson et al., 1991a], leading to the inference that the <span class="hlt">zooplankton</span> were taking advantage of the</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018DSRI..131..121S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018DSRI..131..121S"><span>Comparative larval growth and mortality of mesopelagic fishes and their predatory impact on <span class="hlt">zooplankton</span> in the Kuroshio region</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sassa, Chiyuki; Takahashi, Motomitsu</p> <p>2018-01-01</p> <p>Larvae of mesopelagic fishes usually dominate in oceanic larval fish assemblages, but detailed investigations of their ecology are limited and thus preclude full assessment of the ecosystem structure and dynamics in oceanic waters. Here, we examined the growth and mortality of six taxa of numerically dominant mesopelagic fish larvae and their predatory impact on <span class="hlt">zooplankton</span> in the Kuroshio region off southern Japan during late winter. The weight-specific growth coefficient (Gw) ranged from 0.077 (Sigmops gracilis) to 0.156 d-1 (Vinciguerria nimbaria), and the instantaneous daily mortality coefficient (M) from 0.067 (S. gracilis) to 0.143 d-1 (Myctophum asperum). The ratio Gw/M, an index of stage-specific survival of the larvae, was from 0.90 (Notoscopelus japonicus) to 1.24 (V. nimbaria), without a significant difference from a value of 1 in all species. Based on the reported relationship between Gw and ingestion rate of the larval fishes, the daily ration of each species was calculated to be 32-57% of body dry weight d-1. Mean and 95% confidence interval of food requirements of the six taxa of larvae was 1.41 ± 0.55 mg C m-2 d-1. Predatory impact of the mesopelagic fish larvae on the production rate of the available prey was estimated to be approximately 3.5-5.2%, implying that the larvae have a low level but consistent effect on <span class="hlt">zooplankton</span> production in the oligotrophic Kuroshio region.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018MeScT..29g5401T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018MeScT..29g5401T"><span>Single-camera three-dimensional tracking of natural particulate and <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Troutman, Valerie A.; Dabiri, John O.</p> <p>2018-07-01</p> <p>We develop and characterize an image processing algorithm to adapt single-camera defocusing digital particle image velocimetry (DDPIV) for three-dimensional (3D) particle tracking velocimetry (PTV) of natural particulates, such as those present in the ocean. The conventional DDPIV technique is extended to facilitate tracking of non-uniform, non-spherical particles within a volume depth an order of magnitude larger than current single-camera applications (i.e. 10 cm  ×  10 cm  ×  24 cm depth) by a dynamic template matching method. This 2D cross-correlation method does not rely on precise determination of the centroid of the tracked objects. To accommodate the broad range of particle number densities found in natural marine environments, the performance of the measurement technique at higher particle densities has been improved by utilizing the time-history of tracked objects to inform 3D reconstruction. The developed processing algorithms were analyzed using synthetically generated images of flow induced by Hill’s spherical vortex, and the capabilities of the measurement technique were demonstrated empirically through volumetric reconstructions of the 3D trajectories of particles and highly non-spherical, 5 mm <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3738909','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3738909"><span><span class="hlt">Analysis</span> of Plasmodium falciparum <span class="hlt">diversity</span> in natural infections by deep sequencing</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Manske, Magnus; Miotto, Olivo; Campino, Susana; Auburn, Sarah; Almagro-Garcia, Jacob; Maslen, Gareth; O’Brien, Jack; Djimde, Abdoulaye; Doumbo, Ogobara; Zongo, Issaka; Ouedraogo, Jean-Bosco; Michon, Pascal; Mueller, Ivo; Siba, Peter; Nzila, Alexis; Borrmann, Steffen; Kiara, Steven M.; Marsh, Kevin; Jiang, Hongying; Su, Xin-Zhuan; Amaratunga, Chanaki; Fairhurst, Rick; Socheat, Duong; Nosten, Francois; Imwong, Mallika; White, Nicholas J.; Sanders, Mandy; Anastasi, Elisa; Alcock, Dan; Drury, Eleanor; Oyola, Samuel; Quail, Michael A.; Turner, Daniel J.; Rubio, Valentin Ruano; Jyothi, Dushyanth; Amenga-Etego, Lucas; Hubbart, Christina; Jeffreys, Anna; Rowlands, Kate; Sutherland, Colin; Roper, Cally; Mangano, Valentina; Modiano, David; Tan, John C.; Ferdig, Michael T.; Amambua-Ngwa, Alfred; Conway, David J.; Takala-Harrison, Shannon; Plowe, Christopher V.; Rayner, Julian C.; Rockett, Kirk A.; Clark, Taane G.; Newbold, Chris I.; Berriman, Matthew; MacInnis, Bronwyn; Kwiatkowski, Dominic P.</p> <p>2013-01-01</p> <p>Malaria elimination strategies require surveillance of the parasite population for genetic changes that demand a public health response, such as new forms of drug resistance. 1,2 Here we describe methods for large-scale <span class="hlt">analysis</span> of genetic variation in Plasmodium falciparum by deep sequencing of parasite DNA obtained from the blood of patients with malaria, either directly or after short term culture. <span class="hlt">Analysis</span> of 86,158 exonic SNPs that passed genotyping quality control in 227 samples from Africa, Asia and Oceania provides genome-wide estimates of allele frequency distribution, population structure and linkage disequilibrium. By comparing the genetic <span class="hlt">diversity</span> of individual infections with that of the local parasite population, we derive a metric of within-host <span class="hlt">diversity</span> that is related to the level of inbreeding in the population. An open-access web application has been established for exploration of regional differences in allele frequency and of highly differentiated loci in the P. falciparum genome. PMID:22722859</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_22 --> <div id="page_23" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="441"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010PrOce..87..186I','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010PrOce..87..186I"><span>Application of an automatic approach to calibrate the NEMURO nutrient-phytoplankton-<span class="hlt">zooplankton</span> food web model in the Oyashio region</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ito, Shin-ichi; Yoshie, Naoki; Okunishi, Takeshi; Ono, Tsuneo; Okazaki, Yuji; Kuwata, Akira; Hashioka, Taketo; Rose, Kenneth A.; Megrey, Bernard A.; Kishi, Michio J.; Nakamachi, Miwa; Shimizu, Yugo; Kakehi, Shigeho; Saito, Hiroaki; Takahashi, Kazutaka; Tadokoro, Kazuaki; Kusaka, Akira; Kasai, Hiromi</p> <p>2010-10-01</p> <p>The Oyashio region in the western North Pacific supports high biological productivity and has been well monitored. We applied the NEMURO (North Pacific Ecosystem Model for Understanding Regional Oceanography) model to simulate the nutrients, phytoplankton, and <span class="hlt">zooplankton</span> dynamics. Determination of parameters values is very important, yet ad hoc calibration methods are often used. We used the automatic calibration software PEST (model-independent Parameter ESTimation), which has been used previously with NEMURO but in a system without ontogenetic vertical migration of the large <span class="hlt">zooplankton</span> functional group. Determining the performance of PEST with vertical migration, and obtaining a set of realistic parameter values for the Oyashio, will likely be useful in future applications of NEMURO. Five identical twin simulation experiments were performed with the one-box version of NEMURO. The experiments differed in whether monthly snapshot or averaged state variables were used, in whether state variables were model functional groups or were aggregated (total phytoplankton, small plus large <span class="hlt">zooplankton</span>), and in whether vertical migration of large <span class="hlt">zooplankton</span> was included or not. We then applied NEMURO to monthly climatological field data covering 1 year for the Oyashio, and compared model fits and parameter values between PEST-determined estimates and values used in previous applications to the Oyashio region that relied on ad hoc calibration. We substituted the PEST and ad hoc calibrated parameter values into a 3-D version of NEMURO for the western North Pacific, and compared the two sets of spatial maps of chlorophyll- a with satellite-derived data. The identical twin experiments demonstrated that PEST could recover the known model parameter values when vertical migration was included, and that over-fitting can occur as a result of slight differences in the values of the state variables. PEST recovered known parameter values when using monthly snapshots of aggregated</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26895537','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26895537"><span>Interactive effects of temperature, ultraviolet radiation and food quality on <span class="hlt">zooplankton</span> alkaline phosphatase activity.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wolinski, Laura; Modenutti, Beatriz; Souza, Maria Sol; Balseiro, Esteban</p> <p>2016-06-01</p> <p>Ultraviolet Radiation (UVR) is a stressor for aquatic organisms affecting enzyme activities in planktonic populations because of the increase in reactive oxygen species. In addition, UVR exposure combined with other environmental factors (i.e. temperature and food quality) could have even higher detrimental effects. In this work, we aimed to determine the effect of UVR on somatic Alkaline Phosphatase Activity (APA) and Glutathione S-Transferase (GST) activity on the cladoceran Daphnia commutata under two different temperatures (10 °C and 20 °C) and under three food qualities (carbon:phosphorus ratios: 1150, 850 and 550). APA is a biomarker that is considered as a P deficiency indicator in <span class="hlt">zooplankton</span>. Since recovery from UVR damage under dark conditions is an ATP depending reaction we also measured APA during recovery phases. We carried out a laboratory experiment combining different temperatures and food qualities with exposition to UVR followed by luminic and dark phases for recovery. In addition, we exposed organisms to H2O2, to establish if the response on APA to UVR was a consequence of the reactive oxygen species produced these short wavelengths. Our results showed that somatic APA was negatively affected by UVR exposure and this effect was enhanced under high temperature and low food quality. Consistently, GST activity was higher when exposed to UVR under both temperatures. The H2O2 experiments showed the same trend as UVR exposure, indicating that APA is affected mainly by oxidative stress than by direct effect of UVR on the enzyme. Finally, APA was affected in the dark phase of recovery confirming the P demands. These results enlighten the importance of food quality in the interacting effect of UVR and temperature, showing that C:P food ratio could determine the success or failure of <span class="hlt">zooplanktonic</span> populations in a context of global change. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23240016','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23240016"><span><span class="hlt">Analysis</span> of HIV using a high resolution melting (HRM) <span class="hlt">diversity</span> assay: automation of HRM data <span class="hlt">analysis</span> enhances the utility of the assay for <span class="hlt">analysis</span> of HIV incidence.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cousins, Matthew M; Swan, David; Magaret, Craig A; Hoover, Donald R; Eshleman, Susan H</p> <p>2012-01-01</p> <p>HIV <span class="hlt">diversity</span> may be a useful biomarker for discriminating between recent and non-recent HIV infection. The high resolution melting (HRM) <span class="hlt">diversity</span> assay was developed to quantify HIV <span class="hlt">diversity</span> in viral populations without sequencing. In this assay, HIV <span class="hlt">diversity</span> is expressed as a single numeric HRM score that represents the width of a melting peak. HRM scores are highly associated with <span class="hlt">diversity</span> measures obtained with next generation sequencing. In this report, a software package, the HRM <span class="hlt">Diversity</span> Assay <span class="hlt">Analysis</span> Tool (DivMelt), was developed to automate calculation of HRM scores from melting curve data. DivMelt uses computational algorithms to calculate HRM scores by identifying the start (T1) and end (T2) melting temperatures for a DNA sample and subtracting them (T2 - T1 =  HRM score). DivMelt contains many user-supplied <span class="hlt">analysis</span> parameters to allow analyses to be tailored to different contexts. DivMelt <span class="hlt">analysis</span> options were optimized to discriminate between recent and non-recent HIV infection and to maximize HRM score reproducibility. HRM scores calculated using DivMelt were compared to HRM scores obtained using a manual method that is based on visual inspection of DNA melting curves. HRM scores generated with DivMelt agreed with manually generated HRM scores obtained from the same DNA melting data. Optimal parameters for discriminating between recent and non-recent HIV infection were identified. DivMelt provided greater discrimination between recent and non-recent HIV infection than the manual method. DivMelt provides a rapid, accurate method of determining HRM scores from melting curve data, facilitating use of the HRM <span class="hlt">diversity</span> assay for large-scale studies.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3519891','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3519891"><span><span class="hlt">Analysis</span> of HIV Using a High Resolution Melting (HRM) <span class="hlt">Diversity</span> Assay: Automation of HRM Data <span class="hlt">Analysis</span> Enhances the Utility of the Assay for <span class="hlt">Analysis</span> of HIV Incidence</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Cousins, Matthew M.; Swan, David; Magaret, Craig A.; Hoover, Donald R.; Eshleman, Susan H.</p> <p>2012-01-01</p> <p>Background HIV <span class="hlt">diversity</span> may be a useful biomarker for discriminating between recent and non-recent HIV infection. The high resolution melting (HRM) <span class="hlt">diversity</span> assay was developed to quantify HIV <span class="hlt">diversity</span> in viral populations without sequencing. In this assay, HIV <span class="hlt">diversity</span> is expressed as a single numeric HRM score that represents the width of a melting peak. HRM scores are highly associated with <span class="hlt">diversity</span> measures obtained with next generation sequencing. In this report, a software package, the HRM <span class="hlt">Diversity</span> Assay <span class="hlt">Analysis</span> Tool (DivMelt), was developed to automate calculation of HRM scores from melting curve data. Methods DivMelt uses computational algorithms to calculate HRM scores by identifying the start (T1) and end (T2) melting temperatures for a DNA sample and subtracting them (T2–T1 = HRM score). DivMelt contains many user-supplied <span class="hlt">analysis</span> parameters to allow analyses to be tailored to different contexts. DivMelt <span class="hlt">analysis</span> options were optimized to discriminate between recent and non-recent HIV infection and to maximize HRM score reproducibility. HRM scores calculated using DivMelt were compared to HRM scores obtained using a manual method that is based on visual inspection of DNA melting curves. Results HRM scores generated with DivMelt agreed with manually generated HRM scores obtained from the same DNA melting data. Optimal parameters for discriminating between recent and non-recent HIV infection were identified. DivMelt provided greater discrimination between recent and non-recent HIV infection than the manual method. Conclusion DivMelt provides a rapid, accurate method of determining HRM scores from melting curve data, facilitating use of the HRM <span class="hlt">diversity</span> assay for large-scale studies. PMID:23240016</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26573437','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26573437"><span>How should health service organizations respond to <span class="hlt">diversity</span>? A content <span class="hlt">analysis</span> of six approaches.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Seeleman, Conny; Essink-Bot, Marie-Louise; Stronks, Karien; Ingleby, David</p> <p>2015-11-16</p> <p>Health care organizations need to be responsive to the needs of increasingly <span class="hlt">diverse</span> patient populations. We compared the contents of six publicly available approaches to organizational responsiveness to <span class="hlt">diversity</span>. The central questions addressed in this paper are: what are the most consistently recommended issues for health care organizations to address in order to be responsive to the needs of <span class="hlt">diverse</span> groups that differ from the majority population? How much consensus is there between various approaches? We purposively sampled six approaches from the US, Australia and Europe and used qualitative textual <span class="hlt">analysis</span> to categorize the content of each approach into domains (conceptually distinct topic areas) and, within each domain, into dimensions (operationalizations). The resulting classification framework was used for comparative <span class="hlt">analysis</span> of the content of the six approaches. We identified seven domains that were represented in most or all approaches: organizational commitment, empirical evidence on inequalities and needs, a competent and <span class="hlt">diverse</span> workforce, ensuring access for all users, ensuring responsiveness in care provision, fostering patient and community participation, and actively promoting responsiveness. Variations in the operationalization of these domains related to different scopes, contexts and types of <span class="hlt">diversity</span>. For example, approaches that focus on ethnic <span class="hlt">diversity</span> mostly provide recommendations to handle cultural and language differences; approaches that take an intersectional approach and broaden their target population to vulnerable groups in a more general sense also pay attention to factors such as socio-economic status and gender. Despite differences in labeling, there is a broad consensus about what health care organizations need to do in order to be responsive to patient <span class="hlt">diversity</span>. This opens the way to full scale implementation of organizational responsiveness in healthcare and structured evaluation of its effectiveness in improving</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27706706','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27706706"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of Varronia curassavica Jacq. accessions using ISSR markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Brito, F A; Nizio, D A C; Silva, A V C; Diniz, L E C; Rabbani, A R C; Arrigoni-Blank, M F; Alvares-Carvalho, S V; Figueira, G M; Montanari Júnior, I; Blank, A F</p> <p>2016-09-02</p> <p>Varronia curassavica Jacq. is a medicinal and aromatic plant from Brazil with significant economic importance. Studies on genetic <span class="hlt">diversity</span> in active germplasm banks (AGB) are essential for conservation and breeding programs. The aim of this study was to analyze the genetic <span class="hlt">diversity</span> of V. curassavica accessions of the AGB of Medicinal and Aromatic Plants of the Federal University of Sergipe (UFS), using inter-simple sequence repeat molecular markers. Twenty-four primers were tested, and 14 were polymorphic and informative, resulting in 149 bands with 97.98% polymorphism. The UPGMA dendrogram divided the accessions into Clusters I and II. Jaccard similarity coefficients for pair-wise comparisons of accessions ranged between 0.24 and 0.78. The pairs of accessions VCUR-001/VCUR-503, VCUR-001/VCUR-504, and VCUR-104/VCUR-501 showed relatively low similarity (0.24), and the pair of accessions VCUR-402/VCUR- 403 showed medium similarity (0.78). Twenty-eight accessions were divided into three distinct clusters, according to the STRUCTURE <span class="hlt">analysis</span>. The genetic <span class="hlt">diversity</span> of V. curassavica in the AGB of UFS is low to medium, and it requires expansion. Accession VCUR-802 is the most suitable for selection in breeding program of this species, since it clearly represents all of the <span class="hlt">diversity</span> present in the AGB.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://files.eric.ed.gov/fulltext/EJ1098222.pdf','ERIC'); return false;" href="http://files.eric.ed.gov/fulltext/EJ1098222.pdf"><span>Place of <span class="hlt">Diversity</span> in the Current Ethiopian Education and Training Policy: <span class="hlt">Analysis</span> of Cardinal Dimensions</span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Sime, Tariku; Latchanna, Gara</p> <p>2016-01-01</p> <p>The purpose of this paper was to investigate to what extent the <span class="hlt">diversity</span> dimensions are addressed in the current Education and Training Policy. To that end, document <span class="hlt">analysis</span> was employed. The major <span class="hlt">diversity</span> dimensions were analyzed based on their cardinal features. The study demonstrated that there is an ambitious need to address issues of…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5515314','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5515314"><span><span class="hlt">Analysis</span> of genetic <span class="hlt">diversity</span> of rapeseed genetic resources in Japan and core collection construction</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Chen, Ruikun; Hara, Takashi; Ohsawa, Ryo; Yoshioka, Yosuke</p> <p>2017-01-01</p> <p><span class="hlt">Diversity</span> <span class="hlt">analysis</span> of rapeseed accessions preserved in the Japanese Genebank can provide valuable information for breeding programs. In this study, 582 accessions were genotyped with 30 SSR markers covering all 19 rapeseed chromosomes. These markers amplified 311 alleles (10.37 alleles per marker; range, 3–39). The genetic <span class="hlt">diversity</span> of Japanese accessions was lower than that of overseas accessions. <span class="hlt">Analysis</span> of molecular variance indicated significant genetic differentiation between Japanese and overseas accessions. Small but significant differences were found among geographical groups in Japan, and genetic differentiation tended to increase with geographical distance. STRUCTURE <span class="hlt">analysis</span> indicated the presence of two main genetic clusters in the NARO rapeseed collection. With the membership probabilities threshold, 227 accessions mostly originating from overseas were assigned to one subgroup, and 276 accessions mostly originating from Japan were assigned to the other subgroup. The remaining 79 accessions are assigned to admixed group. The core collection constructed comprises 96 accessions of <span class="hlt">diverse</span> origin. It represents the whole collection well and thus it may be useful for rapeseed genetic research and breeding programs. The core collection improves the efficiency of management, evaluation, and utilization of genetic resources. PMID:28744177</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23855634','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23855634"><span><span class="hlt">Analysis</span> of genetic <span class="hlt">diversity</span> in Bolivian llama populations using microsatellites.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Barreta, J; Gutiérrez-Gil, B; Iñiguez, V; Romero, F; Saavedra, V; Chiri, R; Rodríguez, T; Arranz, J J</p> <p>2013-08-01</p> <p>South American camelids (SACs) have a major role in the maintenance and potential future of rural Andean human populations. More than 60% of the 3.7 million llamas living worldwide are found in Bolivia. Due to the lack of studies focusing on genetic <span class="hlt">diversity</span> in Bolivian llamas, this <span class="hlt">analysis</span> investigates both the genetic <span class="hlt">diversity</span> and structure of 12 regional groups of llamas that span the greater part of the range of distribution for this species in Bolivia. The <span class="hlt">analysis</span> of 42 microsatellite markers in the considered regional groups showed that, in general, there were high levels of polymorphism (a total of 506 detected alleles; average PIC across per marker: 0.66), which are comparable with those reported for other populations of domestic SACs. The estimated <span class="hlt">diversity</span> parameters indicated that there was high intrapopulational genetic variation (average number of alleles and average expected heterozygosity per marker: 12.04 and 0.68, respectively) and weak genetic differentiation among populations (FST range: 0.003-0.052). In agreement with these estimates, Bolivian llamas showed a weak genetic structure and an intense gene flow between all the studied regional groups, which is due to the exchange of reproductive males between the different flocks. Interestingly, the groups for which the largest pairwise FST estimates were observed, Sud Lípez and Nor Lípez, showed a certain level of genetic differentiation that is probably due to the pattern of geographic isolation and limited communication infrastructures of these southern localities. Overall, the population parameters reported here may serve as a reference when establishing conservation policies that address Bolivian llama populations. © 2012 Blackwell Verlag GmbH.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4457624','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4457624"><span>Gastrointestinal Fibroblasts Have Specialized, <span class="hlt">Diverse</span> Transcriptional Phenotypes: A Comprehensive Gene Expression <span class="hlt">Analysis</span> of Human Fibroblasts</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ishii, Genichiro; Aoyagi, Kazuhiko; Sasaki, Hiroki; Ochiai, Atsushi</p> <p>2015-01-01</p> <p>Background Fibroblasts are the principal stromal cells that exist in whole organs and play vital roles in many biological processes. Although the functional <span class="hlt">diversity</span> of fibroblasts has been estimated, a comprehensive <span class="hlt">analysis</span> of fibroblasts from the whole body has not been performed and their transcriptional <span class="hlt">diversity</span> has not been sufficiently explored. The aim of this study was to elucidate the transcriptional <span class="hlt">diversity</span> of human fibroblasts within the whole body. Methods Global gene expression <span class="hlt">analysis</span> was performed on 63 human primary fibroblasts from 13 organs. Of these, 32 fibroblasts from gastrointestinal organs (gastrointestinal fibroblasts: GIFs) were obtained from a pair of 2 anatomical sites: the submucosal layer (submucosal fibroblasts: SMFs) and the subperitoneal layer (subperitoneal fibroblasts: SPFs). Using hierarchical clustering <span class="hlt">analysis</span>, we elucidated identifiable subgroups of fibroblasts and analyzed the transcriptional character of each subgroup. Results In unsupervised clustering, 2 major clusters that separate GIFs and non-GIFs were observed. Organ- and anatomical site-dependent clusters within GIFs were also observed. The signature genes that discriminated GIFs from non-GIFs, SMFs from SPFs, and the fibroblasts of one organ from another organ consisted of genes associated with transcriptional regulation, signaling ligands, and extracellular matrix remodeling. Conclusions GIFs are characteristic fibroblasts with specific gene expressions from transcriptional regulation, signaling ligands, and extracellular matrix remodeling related genes. In addition, the anatomical site- and organ-dependent <span class="hlt">diversity</span> of GIFs was also discovered. These features of GIFs contribute to their specific physiological function and homeostatic maintenance, and create a functional <span class="hlt">diversity</span> of the gastrointestinal tract. PMID:26046848</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/2871635','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/2871635"><span>Locomotor adaptations of some gelatinous <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bone, Q</p> <p>1985-01-01</p> <p> cost of locomotion is greater in Doliolum. Few gelatinous <span class="hlt">zooplankton</span> show special adaptations both for rapid escape movements, and for slow sustained swimming, those that do deserve further study.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28792641','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28792641"><span>Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sommer, Stephanie A; Van Woudenberg, Lauren; Lenz, Petra H; Cepeda, Georgina; Goetze, Erica</p> <p>2017-11-01</p> <p>Although metazoan animals in the mesopelagic zone play critical roles in deep pelagic food webs and in the attenuation of carbon in midwaters, the <span class="hlt">diversity</span> of these assemblages is not fully known. A metabarcoding survey of mesozooplankton <span class="hlt">diversity</span> across the epipelagic, mesopelagic and upper bathypelagic zones (0-1500 m) in the North Pacific Subtropical Gyre revealed far higher estimates of species richness than expected given prior morphology-based studies in the region (4,024 OTUs, 10-fold increase), despite conservative bioinformatic processing. Operational taxonomic unit (OTU) richness of the full assemblage peaked at lower epipelagic-upper mesopelagic depths (100-300 m), with slight shoaling of maximal richness at night due to diel vertical migration, in contrast to expectations of a deep mesopelagic <span class="hlt">diversity</span> maximum as reported for several plankton groups in early systematic and zoogeographic studies. Four distinct depth-stratified species assemblages were identified, with faunal transitions occurring at 100 m, 300 m and 500 m. Highest <span class="hlt">diversity</span> occurred in the smallest <span class="hlt">zooplankton</span> size fractions (0.2-0.5 mm), which had significantly lower % OTUs classified due to poor representation in reference databases, suggesting a deep reservoir of poorly understood <span class="hlt">diversity</span> in the smallest metazoan animals. A <span class="hlt">diverse</span> meroplankton assemblage also was detected (350 OTUs), including larvae of both shallow and deep living benthic species. Our results provide some of the first insights into the hidden <span class="hlt">diversity</span> present in <span class="hlt">zooplankton</span> assemblages in midwaters, and a molecular reappraisal of vertical gradients in species richness, depth distributions and community composition for the full <span class="hlt">zooplankton</span> assemblage across the epipelagic, mesopelagic and upper bathypelagic zones. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/12442','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/12442"><span>In search of common ground among <span class="hlt">diverse</span> forest stakeholders: A contextual content <span class="hlt">analysis</span> of online text</span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Jennifer A. Cuff; David N. Bengston; Donald G. McTavish</p> <p>2000-01-01</p> <p>Managing public forest collaboratively requires an understanding of differences between and similarities among <span class="hlt">diverse</span> stakeholder groups. The Minnesota Contextual Content <span class="hlt">Analysis</span> (MCCA) computer program was used to analyze text obtained from World Wide Web sites expressing the views of seven <span class="hlt">diverse</span> stakeholder groups involved in forest planning and managemnet....</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4553771','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4553771"><span>Production <span class="hlt">diversity</span> and dietary <span class="hlt">diversity</span> in smallholder farm households</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sibhatu, Kibrom T.; Krishna, Vijesh V.; Qaim, Matin</p> <p>2015-01-01</p> <p>Undernutrition and micronutrient malnutrition remain problems of significant magnitude in large parts of the developing world. Improved nutrition requires not only better access to food for poor population segments, but also higher dietary quality and <span class="hlt">diversity</span>. Because many of the poor and undernourished people are smallholder farmers, diversifying production on these smallholder farms is widely perceived as a useful approach to improve dietary <span class="hlt">diversity</span>. However, empirical evidence on the link between production and consumption <span class="hlt">diversity</span> is scarce. Here, this issue is addressed with household-level data from Indonesia, Kenya, Ethiopia, and Malawi. Regression models show that on-farm production <span class="hlt">diversity</span> is positively associated with dietary <span class="hlt">diversity</span> in some situations, but not in all. When production <span class="hlt">diversity</span> is already high, the association is not significant or even turns negative, because of foregone income benefits from specialization. <span class="hlt">Analysis</span> of other factors reveals that market access has positive effects on dietary <span class="hlt">diversity</span>, which are larger than those of increased production <span class="hlt">diversity</span>. Market transactions also tend to reduce the role of farm <span class="hlt">diversity</span> for household nutrition. These results suggest that increasing on-farm <span class="hlt">diversity</span> is not always the most effective way to improve dietary <span class="hlt">diversity</span> in smallholder households and should not be considered a goal in itself. Additional research is needed to better understand how agriculture and food systems can be made more nutrition-sensitive in particular situations. PMID:26261342</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28630804','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28630804"><span><span class="hlt">Diversity</span> <span class="hlt">analysis</span> of gut microbiota in osteoporosis and osteopenia patients.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, Jihan; Wang, Yangyang; Gao, Wenjie; Wang, Biao; Zhao, Heping; Zeng, Yuhong; Ji, Yanhong; Hao, Dingjun</p> <p>2017-01-01</p> <p>Some evidence suggests that bone health can be regulated by gut microbiota. To better understand this, we performed 16S ribosomal RNA sequencing to analyze the intestinal microbial <span class="hlt">diversity</span> in primary osteoporosis (OP) patients, osteopenia (ON) patients and normal controls (NC). We observed an inverse correlation between the number of bacterial taxa and the value of bone mineral density. The <span class="hlt">diversity</span> estimators in the OP and ON groups were increased compared with those in the NC group. Beta <span class="hlt">diversity</span> analyses based on hierarchical clustering and principal coordinate <span class="hlt">analysis</span> (PCoA) could discriminate the NC samples from OP and ON samples. Firmicutes, Bacteroidetes, Proteobacteria and Actinobacteria constituted the four dominant phyla in all samples. Proportion of Firmicutes was significantly higher and Bacteroidetes was significantly lower in OP samples than that in NC samples ( p  < 0.05), Gemmatimonadetes and Chloroflexi were significantly different between OP and NC group as well as between ON and NC group ( p  < 0.01). A total of 21 genera with proportions above 1% were detected and Bacteroides accounted for the largest proportion in all samples. The Blautia, Parabacteroides and Ruminococcaceae genera differed significantly between the OP and NC group ( p  < 0.05). Linear discriminant <span class="hlt">analysis</span> (LDA) results showed one phylum community and seven phylum communities were enriched in ON and OP, respectively. Thirty-five genus communities, five genus communities and two genus communities were enriched in OP, ON and NC, respectively. The results of this study indicate that gut microbiota may be a critical factor in osteoporosis development, which can further help us search for novel biomarkers of gut microbiota in OP and understand the interaction between gut microbiota and bone health.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4664400','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4664400"><span>Predation on the Invasive Copepod, Pseudodiaptomus forbesi, and Native <span class="hlt">Zooplankton</span> in the Lower Columbia River: An Experimental Approach to Quantify Differences in Prey-Specific Feeding Rates</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Adams, Jesse B.; Bollens, Stephen M.; Bishop, John G.</p> <p>2015-01-01</p> <p>Invasive planktonic crustaceans have become a prominent feature of aquatic communities worldwide, yet their effects on food webs are not well known. The Asian calanoid copepod, Pseudodiaptomus forbesi, introduced to the Columbia River Estuary approximately 15 years ago, now dominates the late-summer <span class="hlt">zooplankton</span> community, but its use by native aquatic predators is unknown. We investigated whether three species of planktivorous fishes (chinook salmon, three-spined stickleback, and northern pikeminnow) and one species of mysid exhibited higher feeding rates on native copepods and cladocerans relative to P. forbesi by conducting `single-prey’ feeding experiments and, additionally, examined selectivity for prey types with `two-prey’ feeding experiments. In single-prey experiments individual predator species showed no difference in feeding rates on native cyclopoid copepods (Cyclopidae spp.) relative to invasive P. forbesi, though wild-collected predators exhibited higher feeding rates on cyclopoids when considered in aggregate. In two-prey experiments, chinook salmon and northern pikeminnow both strongly selected native cladocerans (Daphnia retrocurva) over P. forbesi, and moreover, northern pikeminnow selected native Cyclopidae spp. over P. forbesi. On the other hand, in two-prey experiments, chinook salmon, three-spined stickleback and mysids were non- selective with respect to feeding on native cyclopoid copepods versus P. forbesi. Our results indicate that all four native predators in the Columbia River Estuary can consume the invasive copepod, P. forbesi, but that some predators select for native <span class="hlt">zooplankton</span> over P. forbesi, most likely due to one (or both) of two possible underlying casual mechanisms: 1) differential taxon-specific prey motility and escape responses (calanoids > cyclopoids > daphnids) or 2) the invasive status of the <span class="hlt">zooplankton</span> prey resulting in naivety, and thus lower feeding rates, of native predators feeding on invasive prey. PMID</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28188068','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28188068"><span>SSR and morphological trait based population structure <span class="hlt">analysis</span> of 130 <span class="hlt">diverse</span> flax (Linum usitatissimum L.) accessions.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Choudhary, Shashi Bhushan; Sharma, Hariom Kumar; Kumar, Arroju Anil; Maruthi, Rangappa Thimmaiah; Mitra, Jiban; Chowdhury, Isholeena; Singh, Binay Kumar; Karmakar, Pran Gobinda</p> <p>2017-02-01</p> <p>A total of 130 flax accessions of <span class="hlt">diverse</span> morphotypes and worldwide origin were assessed for genetic <span class="hlt">diversity</span> and population structure using 11 morphological traits and microsatellite markers (15 gSSRs and 7 EST-SSRs). <span class="hlt">Analysis</span> performed after classifying these accessions on the basis of plant height, branching pattern, seed size, Indian/foreign origin into six categories called sub-populations viz. fibre type exotic, fibre type indigenous, intermediate type exotic, intermediate type indigenous, linseed type exotic and linseed type indigenous. The study assessed different <span class="hlt">diversity</span> indices, AMOVA, population structure and included a principal coordinate <span class="hlt">analysis</span> based on different marker systems. The highest <span class="hlt">diversity</span> was exhibited by gSSR markers (SI=0.46; He=0.31; P=85.11). AMOVA based on all markers explained significant difference among fibre type, intermediate type and linseed type populations of flax. In terms of variation explained by different markers, EST-SSR markers (12%) better differentiated flax populations compared to morphological (9%) and gSSR (6%) markers at P=0.01. The maximum Nei's unbiased genetic distance (D=0.11) was observed between fibre type and linseed type exotic sub-populations based on EST-SSR markers. The combined structure <span class="hlt">analysis</span> by using all markers grouped Indian fibre type accessions (63.4%) in a separate cluster along with the Indian intermediate type (48.7%), whereas Indian accessions (82.16%) of linseed type constituted an independent cluster. These findings were supported by the results of the principal coordinate <span class="hlt">analysis</span>. Morphological markers employed in the study found complementary with microsatellite based markers in deciphering genetic <span class="hlt">diversity</span> and population structure of the flax germplasm. Copyright © 2016 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017OptEn..56h1805B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017OptEn..56h1805B"><span>Hyperspectral <span class="hlt">analysis</span> of cultural heritage artifacts: pigment material <span class="hlt">diversity</span> in the Gough Map of Britain</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bai, Di; Messinger, David W.; Howell, David</p> <p>2017-08-01</p> <p>The Gough Map, one of the earliest surviving maps of Britain, was created and extensively revised over the 15th century. In 2015, the map was imaged using a hyperspectral imaging system while in the collection at the Bodleian Library, Oxford University. The goal of the collection of the hyperspectral image (HSI) of the Gough Map was to address questions such as enhancement of faded text for reading and <span class="hlt">analysis</span> of the pigments used during its creation and revision. In particular, pigment <span class="hlt">analysis</span> of the Gough Map will help historians understand the material <span class="hlt">diversity</span> of its composition and potentially the timeline of, and methods used in, the creation and revision of the map. Multiple <span class="hlt">analysis</span> methods are presented to analyze a particular pigment in the Gough Map with an emphasis on understanding the within-material <span class="hlt">diversity</span>, i.e., the number and spatial layout of distinct red pigments. One approach for understanding the number of distinct materials in a scene (i.e., endmember selection and dimensionality estimation) is the Gram matrix approach. Here, this method is used to study the within-material differences of pigments in the map with common visual color. The application is a pigment <span class="hlt">analysis</span> tool that extracts visually common pixels (here, the red pigments) from the Gough Map and estimates the material <span class="hlt">diversity</span> of the pixels. Results show that the Gough Map is composed of at least five kinds of dominant red pigments with a particular spatial pattern. This research provides a useful tool for historical geographers and cartographic historians to analyze the material <span class="hlt">diversity</span> of HSI of cultural heritage artifacts.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/17922815','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/17922815"><span>Genetic <span class="hlt">diversity</span> assessment of anoxygenic photosynthetic bacteria by distance-based grouping <span class="hlt">analysis</span> of pufM sequences.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zeng, Y H; Chen, X H; Jiao, N Z</p> <p>2007-12-01</p> <p>To assess how completely the <span class="hlt">diversity</span> of anoxygenic phototrophic bacteria (APB) was sampled in natural environments. All nucleotide sequences of the APB marker gene pufM from cultures and environmental clones were retrieved from the GenBank database. A set of cutoff values (sequence distances 0.06, 0.15 and 0.48 for species, genus, and (sub)phylum levels, respectively) was established using a distance-based grouping program. <span class="hlt">Analysis</span> of the environmental clones revealed that current efforts on APB isolation and sampling in natural environments are largely inadequate. <span class="hlt">Analysis</span> of the average distance between each identified genus and an uncultured environmental pufM sequence indicated that the majority of cultured APB genera lack environmental representatives. The distance-based grouping method is fast and efficient for bulk functional gene sequences <span class="hlt">analysis</span>. The results clearly show that we are at a relatively early stage in sampling the global richness of APB species. Periodical assessment will undoubtedly facilitate in-depth <span class="hlt">analysis</span> of potential biogeographical distribution pattern of APB. This is the first attempt to assess the present understanding of APB <span class="hlt">diversity</span> in natural environments. The method used is also useful for assessing the <span class="hlt">diversity</span> of other functional genes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20379889','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20379889"><span>Characterization of casein gene complex and genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> in Indian goats.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Rout, P K; Kumar, A; Mandal, A; Laloe, D; Singh, S K; Roy, R</p> <p>2010-04-01</p> <p>Milk protein polymorphism plays an important role in genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span>, phylogenetic studies, establishing geographical <span class="hlt">diversity</span>, conservation decision, and improving breeding goals. Milk protein polymorphism in Indian goat breeds has not been well studied; therefore, an investigation was carried out to analyze the genetic structure of the casein gene and milk protein <span class="hlt">diversity</span> at six milk protein loci in nine Indian goat breeds/genetic groups from varied agro-climatic zones. Milk protein genotyping was carried out in 1098 individual milk samples by SDS-PAGE at alphaS1-CN (CSN1S1), beta-CN (CSN2), alphaS2-CN (CSN1S2), kappa-CN (CSN3), beta-LG, and alpha-LA loci. Indian goats exhibited alphaS1-casein A allele in higher frequency in the majority of breeds except Ganjam and local goats. The alphaS1-casein A allele frequencies varied from 0.45 to 0.77. A total of 16 casein haplotypes were observed in seven breeds and breed specific haplotypes were observed with respect to geographic region. The average number of alleles was lowest in Ganjam (1.66 +/- 0.81) and highest in Sirohi goats (2.50 +/- 1.05). Expected heterozygosity at six different loci demonstrated genetic <span class="hlt">diversity</span> and breed fragmentation. Neighbor-Joining tree was built basing on Nei's distance. There was about 16.95% variability due to differences between breeds, indicating a strong subdivision. Principal component <span class="hlt">analysis</span> was carried out to highlight the relationship among breeds. The variability among goat breeds was contributed by alphaS2-CN, beta-LG and alphaS1-CN. The Indian goats exhibited alphaS1-CN (CSN1S1) A allele in higher frequency in all the breeds indicating the higher casein yield in their milk.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_23 --> <div id="page_24" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="461"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010DSRII..57...40B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010DSRII..57...40B"><span>DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bucklin, Ann; Hopcroft, Russell R.; Kosobokova, Ksenia N.; Nigro, Lisa M.; Ortman, Brian D.; Jennings, Robert M.; Sweetman, Christopher J.</p> <p>2010-01-01</p> <p><span class="hlt">Zooplankton</span> species <span class="hlt">diversity</span> and distribution are important measures of environmental change in the Arctic Ocean, and may serve as 'rapid-responders' of climate-induced changes in this fragile ecosystem. The scarcity of taxonomists hampers detailed and up-to-date monitoring of these patterns for the rarer and more problematic species. DNA barcodes (short DNA sequences for species recognition and discovery) provide an alternative approach to accurate identification of known species, and can speed routine <span class="hlt">analysis</span> of <span class="hlt">zooplankton</span> samples. During 2004-2008, <span class="hlt">zooplankton</span> samples were collected during cruises to the central Arctic Ocean and Chukchi Sea. A ˜700 base-pair region of the mitochondrial cytochrome oxidase I (mtCOI) gene was amplified and sequenced for 82 identified specimens of 41 species, including cnidarians (six hydrozoans, one scyphozoan), arthropod crustaceans (five amphipods, 24 copepods, one decapod, and one euphausiid); two chaetognaths; and one nemertean. Phylogenetic <span class="hlt">analysis</span> used the Neighbor-Joining algorithm with Kimura-2-Parameter (K-2-P) distances, with 1000-fold bootstrapping. K-2-P genetic distances between individuals of the same species ranged from 0.0 to 0.2; genetic distances between species ranged widely from 0.1 to 0.7. The mtCOI gene tree showed monophyly (at 100% bootstrap value) for each of the 26 species for which more than one individual was analyzed. Of seven genera for which more than one species was analyzed, four were shown to be monophyletic; three genera were not resolved. At higher taxonomic levels, only the crustacean order Copepoda was resolved, with bootstrap value of 83%. The mtCOI barcodes accurately discriminated and identified known species of 10 taxonomic groups of Arctic Ocean holozooplankton. A comprehensive DNA barcode database for the estimated 300 described species of Arctic holozooplankton will allow rapid assessment of species <span class="hlt">diversity</span> and distribution in this climate-vulnerable ocean ecosystem.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28105571','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28105571"><span>Metal stress in <span class="hlt">zooplankton</span> diapause production: post-hatching response.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Aránguiz-Acuña, Adriana; Pérez-Portilla, Pablo</p> <p>2017-04-01</p> <p>Aquatic organisms commonly respond to harsh conditions by forming diapausing stages, which enable populations to survive adverse periods forming egg banks. Production of diapausing eggs is frequently observed in monogonont rotifers, previously changing from asexual to partial sexual reproduction (mixis). In despite that <span class="hlt">zooplankton</span> are frequently used in ecotoxicological assessment because of their sensitivity to various toxicants and their important role in the ecosystems, toxicity evaluations often consider the directly exposed population produced by parthenogenetic reproduction, exclusively. We assessed experimentally effects of exposure to metals on mixis delay and fitness of hatchlings of the rotifer Brachionus plicatilis obtained from a brackish water lagoon with high metal content, especially copper. We show that sub-lethal concentrations of copper affected traits related to sexual reproduction and diapausing egg production in the rotifer. Copper addition did not delay the start of mixis, suggesting that rapid initiation of mixis is promoted in risky environments, according to the hypothesis of mixis as an escape strategy. Higher investment in mixis was obtained when individuals were exposed to metal. Addition of copper negatively affected the hatching success of diapausing eggs and performance of hatchlings. Nevertheless, these effects were greater for individuals formed in non-metal conditions, suggesting an adaptive advantage of populations from natural sediments exposed to copper. These results highlight the ecological and evolutionary consequences of the presence of metals in freshwater environments by modulating diapause adaptive efficacy and the selective process in egg banks.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5147928','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5147928"><span><span class="hlt">Analysis</span> of HIV <span class="hlt">Diversity</span> in HIV-Infected Black Men Who Have Sex with Men (HPTN 061)</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Chen, Iris; Chau, Gordon; Wang, Jing; Clarke, William; Marzinke, Mark A.; Cummings, Vanessa; Breaud, Autumn; Laeyendecker, Oliver; Fields, Sheldon D.; Griffith, Sam; Scott, Hyman M.; Shoptaw, Steven; del Rio, Carlos; Magnus, Manya; Mannheimer, Sharon; Tieu, Hong-Van; Wheeler, Darrell P.; Mayer, Kenneth H.; Koblin, Beryl A.; Eshleman, Susan H.</p> <p>2016-01-01</p> <p>Background HIV populations often diversify in response to selective pressures, such as the immune response and antiretroviral drug use. We analyzed HIV <span class="hlt">diversity</span> in Black men who have sex with men who were enrolled in the HIV Prevention Trials Network 061 study. Methods A high resolution melting (HRM) <span class="hlt">diversity</span> assay was used to measure <span class="hlt">diversity</span> in six regions of the HIV genome: two in gag, one in pol, and three in env. HIV <span class="hlt">diversity</span> was analyzed for 146 men who were HIV infected at study enrollment, including three with acute infection and 13 with recent infection (identified using a multi-assay algorithm), and for 21 men who seroconverted during the study. HIV diversification was analyzed in a paired <span class="hlt">analysis</span> for 62 HIV-infected men using plasma samples from the enrollment and 12-month (end of study) visits. Results Men with acute or recent infection at enrollment and seroconverters had lower median HRM scores (lower HIV <span class="hlt">diversity</span>) than men with non-recent infection in all six regions analyzed. In univariate analyses, younger age, higher CD4 cell count, and HIV drug resistance were associated with lower median HRM scores in multiple regions; ARV drug detection was marginally associated with lower <span class="hlt">diversity</span> in the pol region. In multivariate <span class="hlt">analysis</span>, acute or recent infection (all six regions) and HIV drug resistance (both gag regions) were associated with lower median HRM scores. Diversification in the pol region over 12 months was greater for men with acute or recent infection, higher CD4 cell count, and lower HIV viral load at study enrollment. Conclusions HIV <span class="hlt">diversity</span> was significantly associated with duration of HIV infection, and lower gag <span class="hlt">diversity</span> was observed in men who had HIV drug resistance. HIV pol diversification was more pronounced in men with acute or recent infection, higher CD4 cell count, and lower HIV viral load. PMID:27936098</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27936098','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27936098"><span><span class="hlt">Analysis</span> of HIV <span class="hlt">Diversity</span> in HIV-Infected Black Men Who Have Sex with Men (HPTN 061).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chen, Iris; Chau, Gordon; Wang, Jing; Clarke, William; Marzinke, Mark A; Cummings, Vanessa; Breaud, Autumn; Laeyendecker, Oliver; Fields, Sheldon D; Griffith, Sam; Scott, Hyman M; Shoptaw, Steven; Del Rio, Carlos; Magnus, Manya; Mannheimer, Sharon; Tieu, Hong-Van; Wheeler, Darrell P; Mayer, Kenneth H; Koblin, Beryl A; Eshleman, Susan H</p> <p>2016-01-01</p> <p>HIV populations often diversify in response to selective pressures, such as the immune response and antiretroviral drug use. We analyzed HIV <span class="hlt">diversity</span> in Black men who have sex with men who were enrolled in the HIV Prevention Trials Network 061 study. A high resolution melting (HRM) <span class="hlt">diversity</span> assay was used to measure <span class="hlt">diversity</span> in six regions of the HIV genome: two in gag, one in pol, and three in env. HIV <span class="hlt">diversity</span> was analyzed for 146 men who were HIV infected at study enrollment, including three with acute infection and 13 with recent infection (identified using a multi-assay algorithm), and for 21 men who seroconverted during the study. HIV diversification was analyzed in a paired <span class="hlt">analysis</span> for 62 HIV-infected men using plasma samples from the enrollment and 12-month (end of study) visits. Men with acute or recent infection at enrollment and seroconverters had lower median HRM scores (lower HIV <span class="hlt">diversity</span>) than men with non-recent infection in all six regions analyzed. In univariate analyses, younger age, higher CD4 cell count, and HIV drug resistance were associated with lower median HRM scores in multiple regions; ARV drug detection was marginally associated with lower <span class="hlt">diversity</span> in the pol region. In multivariate <span class="hlt">analysis</span>, acute or recent infection (all six regions) and HIV drug resistance (both gag regions) were associated with lower median HRM scores. Diversification in the pol region over 12 months was greater for men with acute or recent infection, higher CD4 cell count, and lower HIV viral load at study enrollment. HIV <span class="hlt">diversity</span> was significantly associated with duration of HIV infection, and lower gag <span class="hlt">diversity</span> was observed in men who had HIV drug resistance. HIV pol diversification was more pronounced in men with acute or recent infection, higher CD4 cell count, and lower HIV viral load.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28901808','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28901808"><span>Morphometric characteristics and COI haplotype <span class="hlt">diversity</span> of Arctodiaptomus spinosus (Copedoda) populations in soda pans in Hungary.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Forró, László; Nédli, Judit; Csata, Enikő; Krízsik, Virág; Balogh, Csilla; G-Tóth, László</p> <p>2017-09-01</p> <p>Arctodiaptomus spinosus (Daday, 1891) is a characteristic species of the soda pan <span class="hlt">zooplankton</span> in the Great Hungarian Plain. The biogeographical distribution of the species is interesting, since its range expands from the Pannonian Biogeographic region to the other side of the Carpathians, occurring in saline lakes in Eastern Anatolia, Armenia, Iran and in temporary waters in Ukraine. Our investigations focused on the morphometric characteristics and the COI haplotype <span class="hlt">diversity</span> of four Hungarian populations in the Kiskunság area. We detected substantial morphological differences between the Böddi-szék population and the rest of the sampling sites, however considerable differences were not observable in the COI haplotypes in the populations. The 20 animals investigated for COI haplotypes belonged to the same haplotype network. Tajima's D indicated departures from the neutral Wright - Fisher population model and suggested population expansion. The genetic composition of Arctodiaptomus spinosus populations in the Kiskunság area is rather uniform.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://eric.ed.gov/?q=content+AND+analysis&id=EJ1143006','ERIC'); return false;" href="https://eric.ed.gov/?q=content+AND+analysis&id=EJ1143006"><span>What Are We Teaching in <span class="hlt">Diversity</span> and Social Justice Courses? A Qualitative Content <span class="hlt">Analysis</span> of MSW Syllabi</span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Mehrotra, Gita R.; Hudson, Kimberly D.; Self, Jen M.</p> <p>2017-01-01</p> <p><span class="hlt">Diversity</span> and social justice are central to social work and related curricular content is mandated by accreditation standards. However, research regarding <span class="hlt">diversity</span> and social justice courses remains limited. This study aimed to better understand how these courses are conceptualized through a qualitative content <span class="hlt">analysis</span> of course descriptions and…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25174581','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25174581"><span>Ecosystem engineering effects on species <span class="hlt">diversity</span> across ecosystems: a meta-<span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Romero, Gustavo Q; Gonçalves-Souza, Thiago; Vieira, Camila; Koricheva, Julia</p> <p>2015-08-01</p> <p>Ecosystem engineering is increasingly recognized as a relevant ecological driver of <span class="hlt">diversity</span> and community composition. Although engineering impacts on the biota can vary from negative to positive, and from trivial to enormous, patterns and causes of variation in the magnitude of engineering effects across ecosystems and engineer types remain largely unknown. To elucidate the above patterns, we conducted a meta-<span class="hlt">analysis</span> of 122 studies which explored effects of animal ecosystem engineers on species richness of other organisms in the community. The <span class="hlt">analysis</span> revealed that the overall effect of ecosystem engineers on <span class="hlt">diversity</span> is positive and corresponds to a 25% increase in species richness, indicating that ecosystem engineering is a facilitative process globally. Engineering effects were stronger in the tropics than at higher latitudes, likely because new or modified habitats provided by engineers in the tropics may help minimize competition and predation pressures on resident species. Within aquatic environments, engineering impacts were stronger in marine ecosystems (rocky shores) than in streams. In terrestrial ecosystems, engineers displayed stronger positive effects in arid environments (e.g. deserts). Ecosystem engineers that create new habitats or microhabitats had stronger effects than those that modify habitats or cause bioturbation. Invertebrate engineers and those with lower engineering persistence (<1 year) affected species richness more than vertebrate engineers which persisted for >1 year. Invertebrate species richness was particularly responsive to engineering impacts. This study is the first attempt to build an integrative framework of engineering effects on species <span class="hlt">diversity</span>; it highlights the importance of considering latitude, habitat, engineering functional group, taxon and persistence of their effects in future theoretical and empirical studies. © 2014 The Authors. Biological Reviews © 2014 Cambridge Philosophical Society.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014PhDT........94J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014PhDT........94J"><span>An <span class="hlt">analysis</span> of the effect of STEM initiatives on socially responsible <span class="hlt">diversity</span> management in the US aerospace and defense industry</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Johnson-Oliver, Patrick</p> <p></p> <p>Workforce <span class="hlt">diversity</span> is a growing concern at a global level and enlightened economic self-interest and corporate image compels industries to leverage it as a competitive advantage. The US aerospace and defense industry (US ADI) addresses workforce <span class="hlt">diversity</span> through socially responsible <span class="hlt">diversity</span> management. Prior research into the topic of approaching workforce <span class="hlt">diversity</span> as a business rationale and a moral imperative has been limited. Scharmer and Kaufer's (2013) Theory U guided this longitudinal explanatory quantitative study, leading from the future as it emerged relative to socially responsible <span class="hlt">diversity</span> management to compel industry to remove blind spots and co-create an economy that benefits all by promoting workforce <span class="hlt">diversity</span> as a dual agenda. This study filled a research gap investigating the business case for <span class="hlt">diversity</span> as a dual agenda in aerospace industry science, technology, engineering, and mathematics (STEM) disciplines. The study also investigated the America COMPETES Act as a moderator of the relationship between historically black colleges and universities (HBCUs) and industry. Data was retrieved for secondary data <span class="hlt">analysis</span> from the National Science Foundation (NSF) and other public government services and agency websites. Two hypotheses were tested using quantitative <span class="hlt">analysis</span> including descriptive statistics, linear regression, ANOVA, and two factor <span class="hlt">analysis</span>. The statistical results were analyzed and deductive logic employed to develop conclusions for the study. There was a significant relationship found between both predictors and socially responsible <span class="hlt">diversity</span> management. The results reinforce the necessity for the aerospace defense industry to promote the dual agenda of the business case for <span class="hlt">diversity</span> as complementary; not as competing mandates.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/biblio/7265386-aguirre-environmental-studies-jobos-bay-puerto-rico-volume-final-report','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/7265386-aguirre-environmental-studies-jobos-bay-puerto-rico-volume-final-report"><span></span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Not Available</p> <p></p> <p>The following appendices to volume I are presented: biomass of dominant microzooplankton; biomass of <span class="hlt">zooplankton</span> in surface waters of Jobos Bay; comparison of <span class="hlt">zooplankton</span> caught during day and night; variations in surface temperature and salinity at collection sites; distance, depth, and temperature related to dominant vegetation and sea grass; total biomass of Thalassia testudium; photosynthetic pigment <span class="hlt">diversity</span>; invertebrate species and frequency of occurrence; distribution of macrobenthic organisms; species found on mangrove roots; distribution of fish species; and seasonal occurrence of fish species. (HLW)</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1000359','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1000359"><span>Life histories and abundance of crustacean <span class="hlt">zooplankton</span> in the outlet of Lake Superior, 1971-72</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Selgeby, James H.</p> <p>1975-01-01</p> <p>In sampling throughout a year, at about 3-wk intervals, of the crustacean <span class="hlt">zooplankton</span> discharged from Lake Superior through the St. Marys River, 30 species were collected, including three not previously recorded for the lake: the copepod Cyclops strenuus, and the cladocerans Alona costata and Alonella acutirostris. Five copepods, Cyclops bicuspidatus thomasi, Diaptomus ashlandi, D. sicilis, Limnocalanus macrurus, and Senecella calanoides were present in the plankton throughout the year while three other copepods, Diaptomus minutus, Epischura lacustris, and Mesocyclops edax, along with all cladocerans, were present only during summer and fall. Five species of copepods, Diaptomus sicilis, D. minutus, Limnocalanus macrurus, Senecella calanoides, and Epischura lacustris produced a single generation annually; three other copepods and all cladocerans produced two or more generations. All species breed 1-3 mo later in Lake Superior than in lakes Michigan and Erie.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29106068','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29106068"><span>Global Proteome <span class="hlt">Analysis</span> Links Lysine Acetylation to <span class="hlt">Diverse</span> Functions in Oryza Sativa.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Xue, Chao; Liu, Shuai; Chen, Chen; Zhu, Jun; Yang, Xibin; Zhou, Yong; Guo, Rui; Liu, Xiaoyu; Gong, Zhiyun</p> <p>2018-01-01</p> <p>Lysine acetylation (Kac) is an important protein post-translational modification in both eukaryotes and prokaryotes. Herein, we report the results of a global proteome <span class="hlt">analysis</span> of Kac and its <span class="hlt">diverse</span> functions in rice (Oryza sativa). We identified 1353 Kac sites in 866 proteins in rice seedlings. A total of 11 Kac motifs are conserved, and 45% of the identified proteins are localized to the chloroplast. Among all acetylated proteins, 38 Kac sites are combined in core histones. Bioinformatics <span class="hlt">analysis</span> revealed that Kac occurs on a <span class="hlt">diverse</span> range of proteins involved in a wide variety of biological processes, especially photosynthesis. Protein-protein interaction networks of the identified proteins provided further evidence that Kac contributes to a wide range of regulatory functions. Furthermore, we demonstrated that the acetylation level of histone H3 (lysine 27 and 36) is increased in response to cold stress. In summary, our approach comprehensively profiles the regulatory roles of Kac in the growth and development of rice. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22154276','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22154276"><span>Impacts of an uncontrolled phosphogypsum dumpsite on summer distribution of phytoplankton, copepods and ciliates in relation to abiotic variables along the near-shore of the southwestern Mediterranean coast.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Rekik, Amira; Drira, Zaher; Guermazi, Wassim; Elloumi, Jannet; Maalej, Sami; Aleya, Lotfi; Ayadi, Habib</p> <p>2012-02-01</p> <p>In connection with the Taparura Project, studies of spatial distribution of the crustacean <span class="hlt">zooplankton</span> community, nutrients, phytoplankton and ciliates were conducted in July 2007 at 45 stations spread over fifteen transects along the coast north of Sfax. The results showed that the N/P ratio was lower than the Redfield ratio, suggesting potential N limitation. Phytoplankton was characterised by the proliferation of several diatoms, while ciliates were largely dominated by spirotrichs. Copepods were the most abundant <span class="hlt">zooplankton</span> present during the entire study period, comprising 61% of the total <span class="hlt">zooplankton</span> community. Twelve copepod families were identified at every station, with a high percentage of Oithonidae (77% of copepods) dominated by Oithona nana. The abundance of this species was correlated with that of diatoms, Cocoolithophorideae and ciliated Colpodea, suggesting that O. nana may feed on a wide range of prey. Despite human pressure and industrial activities, the coastal waters north of Sfax showed a wide <span class="hlt">diversity</span> of phytoplankton, ciliates and <span class="hlt">zooplankton</span>. Copyright © 2011 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21563009','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21563009"><span>Molecular <span class="hlt">analysis</span> of microbial <span class="hlt">diversity</span> in corrosion samples from energy transmission towers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Oliveira, Valéria M; Lopes-Oliveira, Patrícia F; Passarini, Michel R Z; Menezes, Claudia B A; Oliveira, Walter R C; Rocha, Adriano J; Sette, Lara D</p> <p>2011-04-01</p> <p>Microbial <span class="hlt">diversity</span> in corrosion samples from energy transmission towers was investigated using molecular methods. Ribosomal DNA fragments were used to assemble gene libraries. Sequence <span class="hlt">analysis</span> indicated 10 bacterial genera within the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes. In the two libraries generated from corroded screw-derived samples, the genus Acinetobacter was the most abundant. Acinetobacter and Clostridium spp. dominated, with similar percentages, in the libraries derived from corrosion scrapings. Fungal clones were affiliated with 14 genera belonging to the phyla Ascomycota and Basidiomycota; of these, Capnobotryella and Fellomyces were the most abundant fungi observed. Several of the microorganisms had not previously been associated with biofilms and corrosion, reinforcing the need to use molecular techniques to achieve a more comprehensive assessment of microbial <span class="hlt">diversity</span> in environmental samples.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26772797','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26772797"><span>Microsatellite <span class="hlt">analysis</span> of Saccharomyces uvarum <span class="hlt">diversity</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Masneuf-Pomarede, Isabelle; Salin, Franck; Börlin, Marine; Coton, Emmanuel; Coton, Monika; Jeune, Christine Le; Legras, Jean-Luc</p> <p>2016-03-01</p> <p>Considered as a sister species of Saccharomyces cerevisiae, S. uvarum is, to a lesser extent, an interesting species for fundamental and applied research studies. Despite its potential interest as a new gene pool for fermenting agents, the intraspecific molecular genetic <span class="hlt">diversity</span> of this species is still poorly investigated. In this study, we report the use of nine microsatellite markers to describe S. uvarum genetic <span class="hlt">diversity</span> and population structure among 108 isolates from various geographical and substrate origins (wine, cider and natural sources). Our combined microsatellite markers set allowed differentiating 89 genotypes. In contrast to S. cerevisiae genetic <span class="hlt">diversity</span>, wild and human origin isolates were intertwined. A total of 75% of strains were proven to be homozygotes and estimated heterozygosity suggests a selfing rate above 0.95 for the different population tested here. From this point of view, the S. uvarum life cycle appears to be more closely related to S. paradoxus or S. cerevisiae of natural resources than S. cerevisiae wine isolates. Population structure could not be correlated to distinct geographic or technological origins, suggesting lower differentiation that may result from a large exchange between human and natural populations mediated by insects or human activities. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28473172','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28473172"><span>Functional <span class="hlt">diversity</span> of <span class="hlt">zooplankton</span> communities in two tropical estuaries (NE Brazil) with different degrees of human-induced disturbance.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Veríssimo, Helena; Patrício, Joana; Gonçalves, Érica; Moura, Gustavo C; Barbosa, José Etham L; Gonçalves, Ana M M</p> <p>2017-08-01</p> <p>This study assessed the functional <span class="hlt">diversity</span> (FD) of copepod communities along the environmental gradient of two tropical estuaries with different intensities of human impact - the environmentally protected "Mamanguape" and the urbanised "Paraiba". Different trait-based approaches were used: functional groups identification and description, and FD indices estimation. The results showed similar functional groups and functional indices between the two estuaries with some variability attributed to seasonality. Copepods in each estuary seemed to perform similar functions. Overall, biomass was more evenly distributed among groups, and mean total biomass and FD indices were slightly higher in the Mamanguape. Nevertheless, both estuaries presented comparable FD, indicating that environmental filters may be the main driver of species coexistence within systems. Results also pointed towards anthropogenic disturbance, despite the protection status of the Mamanguape. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70041505','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70041505"><span>Temporal <span class="hlt">analysis</span> of mtDNA variation reveals decreased genetic <span class="hlt">diversity</span> in least terns</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Draheim, Hope M.; Baird, Patricia; Haig, Susan M.</p> <p>2012-01-01</p> <p>The Least Tern (Sternula antillarum) has undergone large population declines over the last century as a result of direct and indirect anthropogenic factors. The genetic implications of these declines are unknown. We used historical museum specimens (pre-1960) and contemporary (2001–2005) samples to examine range-wide phylogeographic patterns and investigate potential loss in the species' genetic variation. We obtained sequences (522 bp) of the mitochondrial gene for NADH dehydrogenase subunit 6 (ND6) from 268 individuals from across the species' range. Phylogeographic <span class="hlt">analysis</span> revealed no association with geography or traditional subspecies designations. However, we detected potential reductions in genetic <span class="hlt">diversity</span> in contemporary samples from California and the Atlantic coast Least Tern from that in historical samples, suggesting that current genetic <span class="hlt">diversity</span> in Least Tern populations is lower than in their pre-1960 counterparts. Our results offer unique insights into changes in the Least Tern's genetic <span class="hlt">diversity</span> over the past century and highlight the importance and utility of museum specimens in studies of conservation genetics.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19424786','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19424786"><span><span class="hlt">Analysis</span> of genetic <span class="hlt">diversity</span> of Persea bombycina "Som" using RAPD-based molecular markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bhau, Brijmohan Singh; Medhi, Kalyani; Das, Ambrish P; Saikia, Siddhartha P; Neog, Kartik; Choudhury, S N</p> <p>2009-08-01</p> <p>The utility of RAPD markers in assessing genetic <span class="hlt">diversity</span> and phenetic relationships in Persea bombycina, a major tree species for golden silk (muga) production, was investigated using 48 genotypes from northeast India. Thirteen RAPD primer combinations generated 93 bands. On average, seven RAPD fragments were amplified per reaction. In a UPGMA phenetic dendrogram based on Jaccard's coefficient, the P. bombycina accessions showed a high level of genetic variation, as indicated by genetic similarity. The grouping in the phenogram was highly consistent, as indicated by high values of cophenetic correlation and high bootstrap values at the key nodes. The accessions were scattered on a plot derived from principal correspondence <span class="hlt">analysis</span>. The study concluded that the high level of genetic <span class="hlt">diversity</span> in the P. bombycina accessions may be attributed to the species' outcrossing nature. This study may be useful in identifying <span class="hlt">diverse</span> genetic stocks of P. bombycina, which may then be conserved on a priority basis.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29553889','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29553889"><span>Hormone-<span class="hlt">Diversity</span> Fit: Collective Testosterone Moderates the Effect of <span class="hlt">Diversity</span> on Group Performance.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Akinola, Modupe; Page-Gould, Elizabeth; Mehta, Pranjal H; Liu, Zaijia</p> <p>2018-03-01</p> <p>Prior research has found inconsistent effects of <span class="hlt">diversity</span> on group performance. The present research identifies hormonal factors as a critical moderator of the <span class="hlt">diversity</span>-performance connection. Integrating the <span class="hlt">diversity</span>, status, and hormone literatures, we predicted that groups collectively low in testosterone, which orients individuals less toward status competitions and more toward cooperation, would excel with greater group <span class="hlt">diversity</span>. In contrast, groups collectively high in testosterone, which is associated with a heightened status drive, would be derailed by <span class="hlt">diversity</span>. <span class="hlt">Analysis</span> of 74 randomly assigned groups engaged in a group decision-making exercise provided support for these hypotheses. The findings suggest that <span class="hlt">diversity</span> is beneficial for performance, but only if group-level testosterone is low; <span class="hlt">diversity</span> has a negative effect on performance if group-level testosterone is high. Too much collective testosterone maximizes the pains and minimizes the gains from <span class="hlt">diversity</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5748176','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5748176"><span><span class="hlt">Zooplankton</span> can actively adjust their motility to turbulent flow</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Michalec, François-Gaël; Fouxon, Itzhak</p> <p>2017-01-01</p> <p>Calanoid copepods are among the most abundant metazoans in the ocean and constitute a vital trophic link within marine food webs. They possess relatively narrow swimming capabilities, yet are capable of significant self-locomotion under strong hydrodynamic conditions. Here we provide evidence for an active adaptation that allows these small organisms to adjust their motility in response to background flow. We track simultaneously and in three dimensions the motion of flow tracers and planktonic copepods swimming freely at several intensities of quasi-homogeneous, isotropic turbulence. We show that copepods synchronize the frequency of their relocation jumps with the frequency of small-scale turbulence by performing frequent relocation jumps of low amplitude that seem unrelated to localized hydrodynamic signals. We develop a model of plankton motion in turbulence that shows excellent quantitative agreement with our measurements when turbulence is significant. We find that, compared with passive tracers, active motion enhances the diffusion of organisms at low turbulence intensity whereas it dampens diffusion at higher turbulence levels. The existence of frequent jumps in a motion that is otherwise dominated by turbulent transport allows for the possibility of active locomotion and hence to transition from being passively advected to being capable of controlling diffusion. This behavioral response provides <span class="hlt">zooplankton</span> with the capability to retain the benefits of self-locomotion despite turbulence advection and may help these organisms to actively control their distribution in dynamic environments. Our study reveals an active adaptation that carries strong fitness advantages and provides a realistic model of plankton motion in turbulence. PMID:29229858</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA542102','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA542102"><span>Continued <span class="hlt">Analysis</span> of High-Frequency Broadband Acoustic Scattering from Non-Linear Internal Waves during SW06</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2010-09-30</p> <p>1) to understanding and quantifying the contribution to acoustic backscattering from the seasonal pycnocline, 2) to investigate the statistics...echoes from relatively small <span class="hlt">zooplankton</span>, such as pteropods or copepods, potentially in the presence of microstructure or in mixed <span class="hlt">zooplankton</span> assemblages...Lavery et al., 2007) have shown that the predicted scattering from <span class="hlt">zooplankton</span> is dominated by copepods, amphipods, and pteropods , depending on the</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_24 --> <div id="page_25" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li class="active"><span>25</span></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="481"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28727001','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28727001"><span><span class="hlt">Analysis</span> of genetic <span class="hlt">diversity</span> of Chinese dairy goats via microsatellite markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, G Z; Chen, S S; Chao, T L; Ji, Z B; Hou, L; Qin, Z J; Wang, J M</p> <p>2017-05-01</p> <p>In this study, 15 polymorphic microsatellite markers were used to analyze the genetic structure and phylogenetic relationships of 6 dairy goat breeds in China, including 4 native developed breeds and 2 introduced breeds. The results showed that a total of 172 alleles were detected in 347 samples of the dairy goat breeds included in this study. The mean number of effective alleles per locus was 4.92. Except for BMS0812, all of the remaining microsatellite loci were highly polymorphic (polymorphism information content [PIC] > 0.5). The <span class="hlt">analysis</span> of genetic <span class="hlt">diversity</span> parameters, including the number of effective alleles, PIC, and heterozygosity, revealed that the native developed dairy goat breeds in China harbored a rich genetic <span class="hlt">diversity</span>. However, these breeds showed a low breeding degree and a high population intermix degree, with a certain degree of inbreeding and within-subpopulation inbreeding coefficient ( > 0). The <span class="hlt">analysis</span> of population genetic differentiation and phylogenetic tree topologies showed a moderate state of genetic differentiation among subpopulations of native developed breed dairy goats in China (0.05 < gene fixation coefficient [] < 0.15). The native developed breeds shared a common ancestor, namely, the Saanen dairy goat, originating from Europe. The results showed that there was a close genetic relationship between Wendeng and Laoshan dairy goats while the Guanzhong dairy goat and the Xinong Saanen dairy goat were also found to have a close genetic relationship, which were both in agreement with the formation history and geographical distribution of the breeds. This study revealed that adopting genetic management strategies, such as expanding pedigree source and strengthening multi-trait selection, is useful in maintaining the genetic <span class="hlt">diversity</span> of native developed breeds and improving the population uniformity of dairy goats.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4539915','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4539915"><span>MicRhoDE: a curated database for the <span class="hlt">analysis</span> of microbial rhodopsin <span class="hlt">diversity</span> and evolution</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Boeuf, Dominique; Audic, Stéphane; Brillet-Guéguen, Loraine; Caron, Christophe; Jeanthon, Christian</p> <p>2015-01-01</p> <p>Microbial rhodopsins are a <span class="hlt">diverse</span> group of photoactive transmembrane proteins found in all three domains of life and in viruses. Today, microbial rhodopsin research is a flourishing research field in which new understandings of rhodopsin <span class="hlt">diversity</span>, function and evolution are contributing to broader microbiological and molecular knowledge. Here, we describe MicRhoDE, a comprehensive, high-quality and freely accessible database that facilitates <span class="hlt">analysis</span> of the <span class="hlt">diversity</span> and evolution of microbial rhodopsins. Rhodopsin sequences isolated from a vast array of marine and terrestrial environments were manually collected and curated. To each rhodopsin sequence are associated related metadata, including predicted spectral tuning of the protein, putative activity and function, taxonomy for sequences that can be linked to a 16S rRNA gene, sampling date and location, and supporting literature. The database currently covers 7857 aligned sequences from more than 450 environmental samples or organisms. Based on a robust phylogenetic <span class="hlt">analysis</span>, we introduce an operational classification system with multiple phylogenetic levels ranging from superclusters to species-level operational taxonomic units. An integrated pipeline for online sequence alignment and phylogenetic tree construction is also provided. With a user-friendly interface and integrated online bioinformatics tools, this unique resource should be highly valuable for upcoming studies of the biogeography, <span class="hlt">diversity</span>, distribution and evolution of microbial rhodopsins. Database URL: http://micrhode.sb-roscoff.fr. PMID:26286928</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26286928','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26286928"><span>MicRhoDE: a curated database for the <span class="hlt">analysis</span> of microbial rhodopsin <span class="hlt">diversity</span> and evolution.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Boeuf, Dominique; Audic, Stéphane; Brillet-Guéguen, Loraine; Caron, Christophe; Jeanthon, Christian</p> <p>2015-01-01</p> <p>Microbial rhodopsins are a <span class="hlt">diverse</span> group of photoactive transmembrane proteins found in all three domains of life and in viruses. Today, microbial rhodopsin research is a flourishing research field in which new understandings of rhodopsin <span class="hlt">diversity</span>, function and evolution are contributing to broader microbiological and molecular knowledge. Here, we describe MicRhoDE, a comprehensive, high-quality and freely accessible database that facilitates <span class="hlt">analysis</span> of the <span class="hlt">diversity</span> and evolution of microbial rhodopsins. Rhodopsin sequences isolated from a vast array of marine and terrestrial environments were manually collected and curated. To each rhodopsin sequence are associated related metadata, including predicted spectral tuning of the protein, putative activity and function, taxonomy for sequences that can be linked to a 16S rRNA gene, sampling date and location, and supporting literature. The database currently covers 7857 aligned sequences from more than 450 environmental samples or organisms. Based on a robust phylogenetic <span class="hlt">analysis</span>, we introduce an operational classification system with multiple phylogenetic levels ranging from superclusters to species-level operational taxonomic units. An integrated pipeline for online sequence alignment and phylogenetic tree construction is also provided. With a user-friendly interface and integrated online bioinformatics tools, this unique resource should be highly valuable for upcoming studies of the biogeography, <span class="hlt">diversity</span>, distribution and evolution of microbial rhodopsins. Database URL: http://micrhode.sb-roscoff.fr. © The Author(s) 2015. Published by Oxford University Press.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29619504','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29619504"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> of Leuconostoc mesenteroides from Korean vegetables and food products by multilocus sequence typing.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sharma, Anshul; Kaur, Jasmine; Lee, Sulhee; Park, Young-Seo</p> <p>2018-06-01</p> <p>In the present study, 35 Leuconostoc mesenteroides strains isolated from vegetables and food products from South Korea were studied by multilocus sequence typing (MLST) of seven housekeeping genes (atpA, groEL, gyrB, pheS, pyrG, rpoA, and uvrC). The fragment sizes of the seven amplified housekeeping genes ranged in length from 366 to 1414 bp. Sequence <span class="hlt">analysis</span> indicated 27 different sequence types (STs) with 25 of them being represented by a single strain indicating high genetic <span class="hlt">diversity</span>, whereas the remaining 2 were characterized by five strains each. In total, 220 polymorphic nucleotide sites were detected among seven housekeeping genes. The phylogenetic <span class="hlt">analysis</span> based on the STs of the seven loci indicated that the 35 strains belonged to two major groups, A (28 strains) and B (7 strains). Split decomposition <span class="hlt">analysis</span> showed that intraspecies recombination played a role in generating <span class="hlt">diversity</span> among strains. The minimum spanning tree showed that the evolution of the STs was not correlated with food source. This study signifies that the multilocus sequence typing is a valuable tool to access the genetic <span class="hlt">diversity</span> among L. mesenteroides strains from South Korea and can be used further to monitor the evolutionary changes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016NatSR...635039A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016NatSR...635039A"><span>Chytrid parasitism facilitates trophic transfer between bloom-forming cyanobacteria and <span class="hlt">zooplankton</span> (Daphnia)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Agha, Ramsy; Saebelfeld, Manja; Manthey, Christin; Rohrlack, Thomas; Wolinska, Justyna</p> <p>2016-10-01</p> <p>Parasites are rarely included in food web studies, although they can strongly alter trophic interactions. In aquatic ecosystems, poorly grazed cyanobacteria often dominate phytoplankton communities, leading to the decoupling of primary and secondary production. Here, we addressed the interface between predator-prey and host-parasite interactions by conducting a life-table experiment, in which four Daphnia galeata genotypes were maintained on quantitatively comparable diets consisting of healthy cyanobacteria or cyanobacteria infected by a fungal (chytrid) parasite. In four out of five fitness parameters, at least one Daphnia genotype performed better on parasitised cyanobacteria than in the absence of infection. Further treatments consisting of purified chytrid zoospores and heterotrophic bacteria suspensions established the causes of improved fitness. First, Daphnia feed on chytrid zoospores which trophically upgrade cyanobacterial carbon. Second, an increase in heterotrophic bacterial biomass, promoted by cyanobacterial decay, provides an additional food source for Daphnia. In addition, chytrid infection induces fragmentation of cyanobacterial filaments, which could render cyanobacteria more edible. Our results demonstrate that chytrid parasitism can sustain <span class="hlt">zooplankton</span> under cyanobacterial bloom conditions, and exemplify the potential of parasites to alter interactions between trophic levels.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5346705','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5346705"><span>Proteomic <span class="hlt">analysis</span> reveals <span class="hlt">diverse</span> proline hydroxylation-mediated oxygen-sensing cellular pathways in cancer cells</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Liu, Bing; Gao, Yankun; Ruan, Hai-Bin; Chen, Yue</p> <p>2016-01-01</p> <p>Proline hydroxylation is a critical cellular mechanism regulating oxygen-response pathways in tumor initiation and progression. Yet, its substrate <span class="hlt">diversity</span> and functions remain largely unknown. Here, we report a system-wide <span class="hlt">analysis</span> to characterize proline hydroxylation substrates in cancer cells using an immunoaffinity-purification assisted proteomics strategy. We identified 562 sites from 272 proteins in HeLa cells. Bioinformatic <span class="hlt">analysis</span> revealed that proline hydroxylation substrates are significantly enriched with mRNA processing and stress-response cellular pathways with canonical and <span class="hlt">diverse</span> flanking sequence motifs. Structural <span class="hlt">analysis</span> indicates a significant enrichment of proline hydroxylation participating in the secondary structure of substrate proteins. Our study identified and validated Brd4, a key transcription factor, as a novel proline hydroxylation substrate. Functional <span class="hlt">analysis</span> showed that the inhibition of proline hydroxylation pathway significantly reduced the proline hydroxylation abundance on Brd4 and affected Brd4-mediated transcriptional activity as well as cell proliferation in AML leukemia cells. Taken together, our study identified a broad regulatory role of proline hydroxylation in cellular oxygen-sensing pathways and revealed potentially new targets that dynamically respond to hypoxia microenvironment in tumor cells. PMID:27764789</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24289493','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24289493"><span>How <span class="hlt">diverse</span> are <span class="hlt">diversity</span> assessment methods? A comparative <span class="hlt">analysis</span> and benchmarking of molecular descriptor space.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Koutsoukas, Alexios; Paricharak, Shardul; Galloway, Warren R J D; Spring, David R; Ijzerman, Adriaan P; Glen, Robert C; Marcus, David; Bender, Andreas</p> <p>2014-01-27</p> <p>Chemical <span class="hlt">diversity</span> is a widely applied approach to select structurally <span class="hlt">diverse</span> subsets of molecules, often with the objective of maximizing the number of hits in biological screening. While many methods exist in the area, few systematic comparisons using current descriptors in particular with the objective of assessing <span class="hlt">diversity</span> in bioactivity space have been published, and this shortage is what the current study is aiming to address. In this work, 13 widely used molecular descriptors were compared, including fingerprint-based descriptors (ECFP4, FCFP4, MACCS keys), pharmacophore-based descriptors (TAT, TAD, TGT, TGD, GpiDAPH3), shape-based descriptors (rapid overlay of chemical structures (ROCS) and principal moments of inertia (PMI)), a connectivity-matrix-based descriptor (BCUT), physicochemical-property-based descriptors (prop2D), and a more recently introduced molecular descriptor type (namely, "Bayes Affinity Fingerprints"). We assessed both the similar behavior of the descriptors in assessing the <span class="hlt">diversity</span> of chemical libraries, and their ability to select compounds from libraries that are <span class="hlt">diverse</span> in bioactivity space, which is a property of much practical relevance in screening library design. This is particularly evident, given that many future targets to be screened are not known in advance, but that the library should still maximize the likelihood of containing bioactive matter also for future screening campaigns. Overall, our results showed that descriptors based on atom topology (i.e., fingerprint-based descriptors and pharmacophore-based descriptors) correlate well in rank-ordering compounds, both within and between descriptor types. On the other hand, shape-based descriptors such as ROCS and PMI showed weak correlation with the other descriptors utilized in this study, demonstrating significantly different behavior. We then applied eight of the molecular descriptors compared in this study to sample a <span class="hlt">diverse</span> subset of sample compounds (4%) from an</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://eric.ed.gov/?q=congruence&pg=4&id=EJ870223','ERIC'); return false;" href="https://eric.ed.gov/?q=congruence&pg=4&id=EJ870223"><span>Examining the Relationships among Coaching Staff <span class="hlt">Diversity</span>, Perceptions of <span class="hlt">Diversity</span>, Value Congruence, and Life Satisfaction</span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Cunningham, George B.</p> <p>2009-01-01</p> <p>The purpose of this study was to examine relationships among coaching staff <span class="hlt">diversity</span>, perceptions of <span class="hlt">diversity</span>, value congruence, and life satisfaction. Data were collected from 71 coaching staffs (N = 196 coaches). Observed path <span class="hlt">analysis</span> was used to examine the study predictions. Results indicate that actual staff <span class="hlt">diversity</span> was positively…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3231074','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3231074"><span>Performance <span class="hlt">Analysis</span> of Receive <span class="hlt">Diversity</span> in Wireless Sensor Networks over GBSBE Models</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Goel, Shivali; Abawajy, Jemal H.; Kim, Tai-hoon</p> <p>2010-01-01</p> <p>Wireless sensor networks have attracted a lot of attention recently. In this paper, we develop a channel model based on the elliptical model for multipath components involving randomly placed scatterers in the scattering region with sensors deployed on a field. We verify that in a sensor network, the use of receive <span class="hlt">diversity</span> techniques improves the performance of the system. Extensive performance <span class="hlt">analysis</span> of the system is carried out for both single and multiple antennas with the applied receive <span class="hlt">diversity</span> techniques. Performance analyses based on variations in receiver height, maximum multipath delay and transmit power have been performed considering different numbers of antenna elements present in the receiver array, Our results show that increasing the number of antenna elements for a wireless sensor network does indeed improve the BER rates that can be obtained. PMID:22163510</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22191513','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22191513"><span>Application of Biotic Ligand and Toxic Unit modeling approaches to predict improvements in <span class="hlt">zooplankton</span> species richness in smelter-damaged lakes near Sudbury, Ontario.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Khan, Farhan R; Keller, W Bill; Yan, Norman D; Welsh, Paul G; Wood, Chris M; McGeer, James C</p> <p>2012-02-07</p> <p>Using a 30-year record of biological and water chemistry data collected from seven lakes near smelters in Sudbury (Ontario, Canada) we examined the link between reductions of Cu, Ni, and Zn concentrations and <span class="hlt">zooplankton</span> species richness. The toxicity of the metal mixtures was assessed using an additive Toxic Unit (TU) approach. Four TU models were developed based on total metal concentrations (TM-TU); free ion concentrations (FI-TU); acute LC50s calculated from the Biotic Ligand Model (BLM-TU); and chronic LC50s (acute LC50s adjusted by metal-specific acute-to-chronic ratios, cBLM-TU). All models significantly correlated reductions in metal concentrations to increased <span class="hlt">zooplankton</span> species richness over time (p < 0.01) with a rank based on r(2) values of cBLM-TU > BLM-TU = FI-TU > TM-TU. Lake-wise comparisons within each model showed that the BLM-TU and cBLM-TU models provided the best description of recovery across all seven lakes. These two models were used to calculate thresholds for chemical and biological recovery using data from reference lakes in the same region. A threshold value of TU = 1 derived from the cBLM-TU provided the most accurate description of recovery. Overall, BLM-based TU models that integrate site-specific water chemistry-derived estimates of toxicity offer a useful predictor of biological recovery.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25468001','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25468001"><span>Genetic <span class="hlt">diversity</span> <span class="hlt">analysis</span> among collected purslane (Portulaca oleracea L.) accessions using ISSR markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Alam, M Amirul; Juraimi, Abdul Shukor; Rafii, Mohd Yusop; Hamid, Azizah Abdul; Arolu, Ibrahim Wasiu; Abdul Latif, M</p> <p>2015-01-01</p> <p>Genetic <span class="hlt">diversity</span> and relationships among 45 collected purslane accessions were evaluated using ISSR markers. The 28 primers gave a total of 167 bands, among which 163 were polymorphic (97.6%). The genetic <span class="hlt">diversity</span> as estimated by Shannon's information index was 0.513, revealing a quite high level of genetic <span class="hlt">diversity</span> in the germplasm. The average number of observed allele, effective allele, expected heterozygosity, polymorphic information content (PIC) and Nei's index were 5.96, 1.59, 0.43, 0.35 and 0.35, respectively. The UPGMA dendrogram based on Nei's genetic distance grouped the whole germplasm into 7 distinct clusters. The <span class="hlt">analysis</span> of molecular variance (AMOVA) revealed that 89% of total variation occurred within population, while 11% were found among populations. Based on the constructed dendrogram using ISSR markers those accessions that are far from each other by virtue of genetic origin and <span class="hlt">diversity</span> index (like Ac1 and Ac42; Ac19 and Ac45; Ac9 and Ac23; Ac18 and A25; Ac24 and Ac18) are strongly recommended to select as parent for future breeding program to develop high yielding and stress tolerant purslane variety in contribution to global food security. Copyright © 2014 Académie des sciences. Published by Elsevier SAS. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18604492','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18604492"><span>Microeukaryotic <span class="hlt">diversity</span> in marine environments, an <span class="hlt">analysis</span> of surface layer sediments from the East Sea.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Park, Soo-Je; Park, Byoung-Joon; Pham, Vinh Hoa; Yoon, Dae-No; Kim, Si-Kwan; Rhee, Sung-Keun</p> <p>2008-06-01</p> <p>Molecular techniques, based on clone library of 18S rRNA gene, were employed to ascertain the <span class="hlt">diversity</span> of microeukaryotic organisms in sediments from the East Sea. A total of 261 clones were recovered from surface sediments. Most of the clone sequences (90%) were affiliated with protists, dominated by Ciliates (18%) and Dinoflagellates (19%) of Alveolates, phototrophic Stramenopiles (11%), and Cercozoa (20%). Many of the clones were related to uncultivated eukaryotes clones retrieved from anoxic environments with several highly divergent 18S rRNA gene sequences. However, no clones were related to cultivated obligate anaerobic protists. Protistan communities between subsurface layers of 1 and 9 cm shared 23% of total phylotypes which comprised 64% of total clones retrieved. <span class="hlt">Analysis</span> of <span class="hlt">diversity</span> indices and rarefaction curve showed that the protistan community within the 1 cm layer exhibited higher <span class="hlt">diversity</span> than the 9 cm layer. Our results imply that <span class="hlt">diverse</span> protists remain to be uncovered within marine benthic environments.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1990ECSS...31..423C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1990ECSS...31..423C"><span>Abundance and biomass of herbivorous <span class="hlt">zooplankton</span> off Kingston, Jamaica, with estimates of their annual production</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Clarke, Cheryl; Roff, John C.</p> <p>1990-10-01</p> <p>During 1985-1986 weekly collections of <span class="hlt">zooplankton</span> were made off Lime Cay, Jamaica, which is representative of the cays area off southern Jamaica. The dominant (non-copepod) herbivorous taxa, Larvacea, Thaliacea, Cladocera and Pteropoda, were enumerated, and their daily biomasses were estimated by direct weighing or from length-weight regressions. The dominant taxa, in abundance, were the Oikopleuridae and Fritillaridae (49·8% and 35·8%, respectively), but the dominant taxon in terms of biomass was Thalia democratica-on average 75·2% of the total. These herbivorous taxa generally exhibited pronounced variations in abundance which, with the exception of an inverse relationship between Fritillaria spp. and the picoplankton, were not correlated with any size fraction of the phytoplankton. Calculations suggest that, in total, these "other" herbivorous groups may equal the copepods in terms of annual production, and may on occasions exceed them by nearly three-fold.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18955819','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18955819"><span><span class="hlt">Diversity</span> <span class="hlt">analysis</span> of lactic acid bacteria in takju, Korean rice wine.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Jin, Jianbo; Kim, So-Young; Jin, Qing; Eom, Hyun-Ju; Han, Nam Soo</p> <p>2008-10-01</p> <p>To investigate the lactic acid bacterial population in Korean traditional rice wines, biotyping was performed using cell morphology and whole-cell protein pattern <span class="hlt">analysis</span> by SDSPAGE, and then the isolates were identified by 16S rRNA sequencing <span class="hlt">analysis</span>. Based on the morphological characteristics, 103 LAB isolates were detected in wine samples, characterized by whole-cell protein pattern <span class="hlt">analysis</span>, and they were then divided into 18 patterns. By gene sequencing of 16S rRNA, the isolates were identified as Lactobacillus paracasei, Lb. arizonensis, Lb. plantarum, Lb. harbinensis, Lb. parabuchneri, Lb. brevis, and Lb. hilgardii when listed by their frequency of occurrence. It was found that the difference in bacterial <span class="hlt">diversity</span> between rice and grape wines depends on the raw materials, especially the composition of starch and glucose.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29472798','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29472798"><span>Plankton community and the relationship with the environment in saline lakes of Onon-Torey plain, Northeastern Mongolia.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Afonina, Ekaterina Yu; Tashlykova, Natalya A</p> <p>2018-02-01</p> <p>The plankton community of sixteen saline lakes located on Onon-Torey plain (Northeastern Mongolia) during the filling phase and the raising of the water level was investigated in July 2011. Thirty-five taxa of phytoplankton and thirty-one species of <span class="hlt">zooplankton</span> were found. For phytoplankton, blue-green algae ( Merismopedia elegans , Anabaenopsis elenkinii , Arthrospora fusiformis , Spirulina major , Lyngbya sp., Oscillatoria sp.) and green algae ( Monoraphidium minutum , Tetrastrum komarekii , Ankyra ocellata , Oocystis sp.) were dominant. For <span class="hlt">zooplankton</span>, Filinia longiseta, Brachionus plicatilis , B. variabilis , Hexarthra mira (Rotifera), Daphnia magna , Moina brachiata , M. mongolica (Cladocera), Arctodiaptomus bacillifer , Mixodiaptomus incrassatus , Metadiaptomus asiaticus (Copepoda) dominated. Mineralization, active hydrogen ratio, dissolved oxygen and water temperature were the main factors influencing the <span class="hlt">diversity</span>, structure and distribution of plankton organisms in the steppe lakes during low water level. The RDA <span class="hlt">analysis</span> for phytoplankton and <span class="hlt">zooplankton</span> from different lakes was carried out for selected two groups which included lakes and a subset related species. The first group is of oligohaline and mesohaline lakes in which mostly green algae, rotifers and copepods inhabit. The second group is of mesohaline and polyhaline lakes with mainly blue-green algae , some crustaceans and rotifers inhabiting. High abundance and biomass of Spirulina major , Oscillatoria sp. and Brachionus variabilis were observed in lakes with high mineralization, pH and temperature.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA622632','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA622632"><span>Continued <span class="hlt">Analysis</span> of High-Frequency Broadband Acoustic Scattering from Non-Linear Internal Waves during SW06</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2014-06-20</p> <p><span class="hlt">zooplankton</span> models (Lavery et al, 2007) have shown that the predicted scattering from <span class="hlt">zooplankton</span> is dominated by copepods, amphipods, and pteropods ...which there is significant salinity gradient, the predicted scattering from the seasonal pycnocline during SW06 was not able to account for the...has focused on echoes from relatively small <span class="hlt">zooplankton</span>, such as pteropods or copepods, potentially in the presence of microstructure or in mixed</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28540710','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28540710"><span>Genetic <span class="hlt">Diversity</span> <span class="hlt">Analysis</span> of Medicinally Important Horticultural Crop Aegle marmelos by ISSR Markers.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Mujeeb, Farina; Bajpai, Preeti; Pathak, Neelam; Verma, Smita Rastogi</p> <p>2017-01-01</p> <p>Inter simple sequence repeat (ISSR) markers help in identifying and determining the extent of genetic <span class="hlt">diversity</span> in cultivars. Here, we describe their application in determining the genetic <span class="hlt">diversity</span> of bael (Aegle marmelos Corr.). Universal ISSR primers are selected and their marker characteristics such as polymorphism information content, effective multiplex ratio and marker index have been evaluated. ISSR-PCR is then performed using universal ISSR primers to generate polymorphic bands. This information is used to determine the degree of genetic similarity among the bael varieties/accessions by cluster <span class="hlt">analysis</span> using unweighted pair-group method with arithmetic averages (UPGMA). This technology is valuable for biodiversity conservation and for making an efficient choice of parents in breeding programs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27842492','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27842492"><span>Genetic <span class="hlt">diversity</span> and population structure <span class="hlt">analysis</span> to construct a core collection from a large Capsicum germplasm.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lee, Hea-Young; Ro, Na-Young; Jeong, Hee-Jin; Kwon, Jin-Kyung; Jo, Jinkwan; Ha, Yeaseong; Jung, Ayoung; Han, Ji-Woong; Venkatesh, Jelli; Kang, Byoung-Cheorl</p> <p>2016-11-14</p> <p>Conservation of genetic <span class="hlt">diversity</span> is an essential prerequisite for developing new cultivars with desirable agronomic traits. Although a large number of germplasm collections have been established worldwide, many of them face major difficulties due to large size and a lack of adequate information about population structure and genetic <span class="hlt">diversity</span>. Core collection with a minimum number of accessions and maximum genetic <span class="hlt">diversity</span> of pepper species and its wild relatives will facilitate easy access to genetic material as well as the use of hidden genetic <span class="hlt">diversity</span> in Capsicum. To explore genetic <span class="hlt">diversity</span> and population structure, we investigated patterns of molecular <span class="hlt">diversity</span> using a transcriptome-based 48 single nucleotide polymorphisms (SNPs) in a large germplasm collection comprising 3,821 accessions. Among the 11 species examined, Capsicum annuum showed the highest genetic <span class="hlt">diversity</span> (H E  = 0.44, I = 0.69), whereas the wild species C. galapagoense showed the lowest genetic <span class="hlt">diversity</span> (H E  = 0.06, I = 0.07). The Capsicum germplasm collection was divided into 10 clusters (cluster 1 to 10) based on population structure <span class="hlt">analysis</span>, and five groups (group A to E) based on phylogenetic <span class="hlt">analysis</span>. Capsicum accessions from the five distinct groups in an unrooted phylogenetic tree showed taxonomic distinctness and reflected their geographic origins. Most of the accessions from European countries are distributed in the A and B groups, whereas the accessions from Asian countries are mainly distributed in C and D groups. Five different sampling strategies with <span class="hlt">diverse</span> genetic clustering methods were used to select the optimal method for constructing the core collection. Using a number of allelic variations based on 48 SNP markers and 32 different phenotypic/morphological traits, a core collection 'CC240' with a total of 240 accessions (5.2 %) was selected from within the entire Capsicum germplasm. Compared to the other core collections, CC240 displayed higher</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23941002','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23941002"><span>Inheritance of dermatoglyphic asymmetry and <span class="hlt">diversity</span> traits in twins based on factor: variance decomposition <span class="hlt">analysis</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Karmakar, Bibha; Malkin, Ida; Kobyliansky, Eugene</p> <p>2013-06-01</p> <p>Dermatoglyphic asymmetry and <span class="hlt">diversity</span> traits from a large number of twins (MZ and DZ) were analyzed based on principal factors to evaluate genetic effects and common familial environmental influences on twin data by the use of maximum likelihood-based Variance decomposition <span class="hlt">analysis</span>. Sample consists of monozygotic (MZ) twins of two sexes (102 male pairs and 138 female pairs) and 120 pairs of dizygotic (DZ) female twins. All asymmetry (DA and FA) and <span class="hlt">diversity</span> of dermatoglyphic traits were clearly separated into factors. These are perfectly corroborated with the earlier studies in different ethnic populations, which indicate a common biological validity perhaps exists of the underlying component structures of dermatoglyphic characters. Our heritability result in twins clearly showed that DA_F2 is inherited mostly in dominant type (28.0%) and FA_F1 is additive (60.7%), but no significant difference in sexes was observed for these factors. Inheritance is also very prominent in <span class="hlt">diversity</span> Factor 1, which is exactly corroborated with our previous findings. The present results are similar with the earlier results of finger ridge count <span class="hlt">diversity</span> in twin data, which suggested that finger ridge count <span class="hlt">diversity</span> is under genetic control.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4981947','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4981947"><span>Benthic‐pelagic coupling drives non‐seasonal <span class="hlt">zooplankton</span> blooms and restructures energy flows in shallow tropical lakes</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Schagerl, Michael; Yasindi, Andrew; Singer, Gabriel; Kaggwa, Mary Nakabungo; Winder, Monika</p> <p>2016-01-01</p> <p>Abstract <span class="hlt">Zooplankton</span> blooms are a frequent phenomenon in tropical systems. However, drivers of bloom formation and the contribution of emerging resting eggs are largely unexplored. We investigated the dynamics and the triggers of rotifer blooms in African soda‐lakes and assessed their impact on other trophic levels. A meta‐<span class="hlt">analysis</span> of rotifer peak densities including abundances of up to 6 × 105 individuals L−1 demonstrated that rotifer bloom formation was uncoupled from the food environment and the seasonality of climatic conditions. A time series with weekly sampling intervals from Lake Nakuru (Kenya) revealed that intrinsic growth factors (food quality and the physicochemical environment) significantly affected rotifer population fluctuations, but were of minor importance for bloom formation. Instead, rotifer bloom formation was linked to sediment resuspension, a prerequisite for hatching of resting‐eggs. Population growth rates exceed pelagic birth rates and simulations of rotifer dynamics confirmed the quantitative importance of rotifer emergence from the sediment egg‐bank and signifying a decoupling of bloom formation from pelagic reproduction. Rotifer blooms led to a top‐down control of small‐sized algae and facilitated a switch to more grazing‐resistant, filamentous cyanobacteria. This shift in phytoplankton composition cascaded up the food chain and triggered the return of filter‐feeding flamingos. Calculations of consequent changes in the lake's energy budget and export of aquatic primary production to terrestrial ecosystems demonstrated the large potential impact of nonseasonal disturbances on the functioning of shallow tropical lakes. PMID:27587899</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li class="active"><span>25</span></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_25 --> <div class="footer-extlink text-muted" style="margin-bottom:1rem; text-align:center;">Some links on this page may take you to non-federal websites. 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